Eleven candidate susceptibility genes for common familial colorectal cancer
Gylfe, Alexandra E, Katainen, Riku, Kondelin, Johanna, Tanskanen, Tomas, Cajuso, Tatiana, Hänninen, Ulrika, Taipale, Jussi, Taipale, Minna, Renkonen-Sinisalo, Laura, Järvinen, Heikki, Mecklin, Jukka-Pekka, Kilpivaara, Outi, Pitkänen, Esa, Vahteristo, Pia, Tuupanen, Sari, Karhu, Auli, Aaltonen, Lauri A
Published in PLoS genetics (01.10.2013)
Published in PLoS genetics (01.10.2013)
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Exome sequencing reveals frequent inactivating mutations in ARID1A, ARID1B, ARID2 and ARID4A in microsatellite unstable colorectal cancer
Cajuso, Tatiana, Hänninen, Ulrika A., Kondelin, Johanna, Gylfe, Alexandra E., Tanskanen, Tomas, Katainen, Riku, Pitkänen, Esa, Ristolainen, Heikki, Kaasinen, Eevi, Taipale, Minna, Taipale, Jussi, Böhm, Jan, Renkonen‐Sinisalo, Laura, Mecklin, Jukka‐Pekka, Järvinen, Heikki, Tuupanen, Sari, Kilpivaara, Outi, Vahteristo, Pia
Published in International journal of cancer (01.08.2014)
Published in International journal of cancer (01.08.2014)
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Journal Article
CTCF/cohesin-binding sites are frequently mutated in cancer
Katainen, Riku, Dave, Kashyap, Pitkänen, Esa, Palin, Kimmo, Kivioja, Teemu, Välimäki, Niko, Gylfe, Alexandra E, Ristolainen, Heikki, Hänninen, Ulrika A, Cajuso, Tatiana, Kondelin, Johanna, Tanskanen, Tomas, Mecklin, Jukka-Pekka, Järvinen, Heikki, Renkonen-Sinisalo, Laura, Lepistö, Anna, Kaasinen, Eevi, Kilpivaara, Outi, Tuupanen, Sari, Enge, Martin, Taipale, Jussi, Aaltonen, Lauri A
Published in Nature genetics (01.07.2015)
Published in Nature genetics (01.07.2015)
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Identification of Candidate Oncogenes in Human Colorectal Cancers With Microsatellite Instability
Gylfe, Alexandra E, Kondelin, Johanna, Turunen, Mikko, Ristolainen, Heikki, Katainen, Riku, Pitkänen, Esa, Kaasinen, Eevi, Rantanen, Ville, Tanskanen, Tomas, Varjosalo, Markku, Lehtonen, Heli, Palin, Kimmo, Taipale, Minna, Taipale, Jussi, Renkonen–Sinisalo, Laura, Järvinen, Heikki, Böhm, Jan, Mecklin, Jukka–Pekka, Ristimäki, Ari, Kilpivaara, Outi, Tuupanen, Sari, Karhu, Auli, Vahteristo, Pia, Aaltonen, Lauri A
Published in Gastroenterology (New York, N.Y. 1943) (01.09.2013)
Published in Gastroenterology (New York, N.Y. 1943) (01.09.2013)
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Somatic mutations and germline sequence variants in patients with familial colorectal cancer
Gylfe, Alexandra E., Sirkiä, Johanna, Ahlsten, Manuel, Järvinen, Heikki, Mecklin, Jukka‐Pekka, Karhu, Auli, Aaltonen, Lauri A.
Published in International journal of cancer (15.12.2010)
Published in International journal of cancer (15.12.2010)
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Journal Article
Exome sequencing in diagnostic evaluation of colorectal cancer predisposition in young patients
Tanskanen, Tomas, Gylfe, Alexandra E, Katainen, Riku, Taipale, Minna, Renkonen-Sinisalo, Laura, Mecklin, Jukka-Pekka, Järvinen, Heikki, Tuupanen, Sari, Kilpivaara, Outi, Vahteristo, Pia, Aaltonen, Lauri A
Published in Scandinavian journal of gastroenterology (01.06.2013)
Published in Scandinavian journal of gastroenterology (01.06.2013)
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Systematic search for rare variants in Finnish early-onset colorectal cancer patients
Tanskanen, Tomas, Gylfe, Alexandra E, Katainen, Riku, Taipale, Minna, Renkonen-Sinisalo, Laura, Järvinen, Heikki, Mecklin, Jukka-Pekka, Böhm, Jan, Kilpivaara, Outi, Pitkänen, Esa, Palin, Kimmo, Vahteristo, Pia, Tuupanen, Sari, Aaltonen, Lauri A
Published in Cancer genetics (2015)
Published in Cancer genetics (2015)
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3′-UTR poly(T/U) repeat of EWSR1 is altered in microsatellite unstable colorectal cancer with nearly perfect sensitivity
Kondelin, Johanna, Tuupanen, Sari, Gylfe, Alexandra E., Aavikko, Mervi, Renkonen-Sinisalo, Laura, Järvinen, Heikki, Böhm, Jan, Mecklin, Jukka-Pekka, Andersen, Claus L., Vahteristo, Pia, Pitkänen, Esa, Aaltonen, Lauri A.
Published in Familial cancer (01.09.2015)
Published in Familial cancer (01.09.2015)
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Abstract 3420: Integrative tumor profiling beyond panel sequencing
Lau, Corine K., Harley, Alena S., Choppa, Paul, Cooc, Janine, Kyshtoobayeva, Ainura, Jun, Natalia, Dayrit, Mark, Delport, Wayne, Saldivar, Mark, Jun, Yop, Trivedi, Raaj, Gylfe, Alexandra E., Lacey, Travis R., Cohen, Ezra, Bloom, Kenneth, Shinbrot, Eve
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Comprehensive analysis of tumor NGS data to demonstrate pathways pointing to therapeutic targeting options
Krishnan, Subha, Perlina, Ally, Thomas, Alex, Kakaradov, Boyko, Delport, Wayne, Nehring, Ramlah B, Shinbrot, Eve, Natarajan, Thanemozhi G, Lau, Corine K, Gylfe, Alexandra E, Sainger, Rachana, Pelak, Kimberly, Smith, Heather L, Biggs, William, Perkins, Brad, Cohen, Ezra E.W., Bloom, Kenneth Joel
Published in Journal of clinical oncology (20.05.2017)
Published in Journal of clinical oncology (20.05.2017)
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Journal Article
Comprehensive Evaluation of Protein Coding Mononucleotide Microsatellites in Microsatellite-Unstable Colorectal Cancer
Kondelin, Johanna, Gylfe, Alexandra E, Lundgren, Sofie, Tanskanen, Tomas, Hamberg, Jiri, Aavikko, Mervi, Palin, Kimmo, Ristolainen, Heikki, Katainen, Riku, Kaasinen, Eevi, Taipale, Minna, Taipale, Jussi, Renkonen-Sinisalo, Laura, Järvinen, Heikki, Böhm, Jan, Mecklin, Jukka-Pekka, Vahteristo, Pia, Tuupanen, Sari, Aaltonen, Lauri A, Pitkänen, Esa
Published in Cancer research (Chicago, Ill.) (01.08.2017)
Published in Cancer research (Chicago, Ill.) (01.08.2017)
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Journal Article
Tumor profiling from whole-genome and whole transcriptome sequencing to uncover gene fusions and structural variations in clinically relevant cancer genes
Gylfe, Alexandra E, Shinbrot, Eve, Kakaradov, Boyko, Delport, Wayne, Lau, Corine K, Krishnan, Subha, Perlina, Ally, Natarajan, Thanemozhi G, Sainger, Rachana, Pelak, Kimberly, Choppa, Paul, Cooc, Janine, Biggs, William, Smith, Heather L, Perkins, Brad, Jones, Daniel G, Nehring, Ramlah B, Cohen, Ezra E.W., Bloom, Kenneth Joel
Published in Journal of clinical oncology (20.05.2017)
Published in Journal of clinical oncology (20.05.2017)
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Journal Article
Comprehensive evaluation of coding region point mutations in microsatellite‐unstable colorectal cancer
Kondelin, Johanna, Salokas, Kari, Saarinen, Lilli, Ovaska, Kristian, Rauanheimo, Heli, Plaketti, Roosa‐Maria, Hamberg, Jiri, Liu, Xiaonan, Yadav, Leena, Gylfe, Alexandra E, Cajuso, Tatiana, Hänninen, Ulrika A, Palin, Kimmo, Ristolainen, Heikki, Katainen, Riku, Kaasinen, Eevi, Tanskanen, Tomas, Aavikko, Mervi, Taipale, Minna, Taipale, Jussi, Renkonen‐Sinisalo, Laura, Lepistö, Anna, Koskensalo, Selja, Böhm, Jan, Mecklin, Jukka‐Pekka, Ongen, Halit, Dermitzakis, Emmanouil T, Kilpivaara, Outi, Vahteristo, Pia, Turunen, Mikko, Hautaniemi, Sampsa, Tuupanen, Sari, Karhu, Auli, Välimäki, Niko, Varjosalo, Markku, Pitkänen, Esa, Aaltonen, Lauri A
Published in EMBO molecular medicine (01.09.2018)
Published in EMBO molecular medicine (01.09.2018)
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Journal Article
Abstract 5193: Novel candidate oncogenes with mutation hot spots in microsatellite unstable colorectal cancer
Gylfe, Alexandra E., Tuupanen, Sari, Hänninen, Ulrika, Kondelin, Johanna, Ristolainen, Heikki, Katainen, Riku, Pitkänen, Esa, Taipale, Minna, Taipale, Jussi, Andersen, Claus Lindbjerg, Renkonen-Sinisalo, Laura, Järvinen, Heikki, Böhm, Jan, Mecklin, Jukka-Pekka, Vahteristo, Pia, Aaltonen, Lauri A.
Published in Cancer research (Chicago, Ill.) (01.10.2014)
Published in Cancer research (Chicago, Ill.) (01.10.2014)
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Journal Article
Abstract 2401: Identification of new target genes in microsatellite unstable colorectal cancer by exome sequencing
Kondelin, Johanna, Pitkänen, Esa, Gylfe, Alexandra E., Palin, Kimmo, Ristolainen, Heikki, Katainen, Riku, Kaasinen, Eevi, Taipale, Minna, Taipale, Jussi, Renkonen-Sinisalo, Laura, Järvinen, Heikki, Böhm, Jan, Mecklin, Jukka-Pekka, Vahteristo, Pia, Tuupanen, Sari, Aaltonen, Lauri A.
Published in Cancer research (Chicago, Ill.) (01.10.2014)
Published in Cancer research (Chicago, Ill.) (01.10.2014)
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Journal Article
Exome sequencing reveals frequent inactivating mutations in ARID1A, ARID1B, ARID2 and ARID4A in microsatellite unstable colorectal cancer: ARID mutations in MSI CRC
Cajuso, Tatiana, Hänninen, Ulrika A., Kondelin, Johanna, Gylfe, Alexandra E., Tanskanen, Tomas, Katainen, Riku, Pitkänen, Esa, Ristolainen, Heikki, Kaasinen, Eevi, Taipale, Minna, Taipale, Jussi, Böhm, Jan, Renkonen-Sinisalo, Laura, Mecklin, Jukka-Pekka, Järvinen, Heikki, Tuupanen, Sari, Kilpivaara, Outi, Vahteristo, Pia
Published in International journal of cancer (01.08.2014)
Published in International journal of cancer (01.08.2014)
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Journal Article
Eleven Candidate Susceptibility Genes for Common Familial Colorectal Cancer: e1003876
Gylfe, Alexandra E, Katainen, Riku, Kondelin, Johanna, Tanskanen, Tomas, Cajuso, Tatiana, Hänninen, Ulrika, Taipale, Jussi, Taipale, Minna, Renkonen-Sinisalo, Laura, Järvinen, Heikki, Mecklin, Jukka-Pekka, Kilpivaara, Outi, Pitkänen, Esa, Vahteristo, Pia, Tuupanen, Sari, Karhu, Auli, Aaltonen, Lauri A
Published in PLoS genetics (01.10.2013)
Published in PLoS genetics (01.10.2013)
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Journal Article
Abstract 3156: New candidate oncogenes discovered in microsatellite unstable colorectal cancer
Gylfe, Alexandra E., Kondelin, Johanna, Turunen, Mikko, Ristolainen, Heikki, Katainen, Riku, Pitkänen, Esa, Kaasinen, Eevi, Rantanen, Ville, Tanskanen, Tomas, Lehtonen, Heli J., Palin, Kimmo, Taipale, Minna, Taipale, Jussi, Renkonen-Sinisalo, Laura, Järvinen, Heikki, Böhm, Jan, Mecklin, Jukka-Pekka, Ristimäki, Ari, Tuupanen, Sari, Karhu, Auli, Kilpivaara, Outi, Vahteristo, Pia, Aaltonen, Lauri A.
Published in Cancer research (Chicago, Ill.) (15.04.2013)
Published in Cancer research (Chicago, Ill.) (15.04.2013)
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Journal Article
Characterization of the colorectal cancer–associated enhancer MYC-335 at 8q24: the role of rs67491583
Tuupanen, Sari, Yan, Jian, Turunen, Mikko, Gylfe, Alexandra E, Kaasinen, Eevi, Li, Li, Eng, Charis, Culver, Daniel A, Kalady, Matthew F, Pennison, Michael J, Pasche, Boris, Manne, Upender, de la Chapelle, Albert, Hampel, Heather, Henderson, Brian E, Le Marchand, Loic, Hautaniemi, Sampsa, Askhtorab, Hassan, Smoot, Duane, Sandler, Robert S, Keku, Temitope, Kupfer, Sonia S, Ellis, Nathan A, Haiman, Christopher A, Taipale, Jussi, Aaltonen, Lauri A
Published in Cancer genetics (01.01.2012)
Published in Cancer genetics (01.01.2012)
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