Identification of Transcripts with Shared Roles in the Pathogenesis of Postmenopausal Osteoporosis and Cardiovascular Disease
Reppe, Sjur, Gundersen, Sveinung, Sandve, Geir K, Wang, Yunpeng, Andreassen, Ole A, Medina-Gomez, Carolina, Rivadeneira, Fernando, Utheim, Tor P, Hovig, Eivind, Gautvik, Kaare M
Published in International journal of molecular sciences (20.05.2024)
Published in International journal of molecular sciences (20.05.2024)
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Recommendations for the FAIRification of genomic track metadata [version 1; peer review: 2 approved]
Gundersen, Sveinung, Boddu, Sanjay, Capella-Gutierrez, Salvador, Drabløs, Finn, Fernández, José M, Kompova, Radmila, Taylor, Kieron, Titov, Dmytro, Zerbino, Daniel, Hovig, Eivind
Published in F1000 research (2021)
Published in F1000 research (2021)
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The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires
Pavlović, Milena, Scheffer, Lonneke, Motwani, Keshav, Kanduri, Chakravarthi, Kompova, Radmila, Vazov, Nikolay, Waagan, Knut, Bernal, Fabian L M, Costa, Alexandre Almeida, Corrie, Brian, Akbar, Rahmad, Al Hajj, Ghadi S, Balaban, Gabriel, Brusko, Todd M, Chernigovskaya, Maria, Christley, Scott, Cowell, Lindsay G, Frank, Robert, Grytten, Ivar, Gundersen, Sveinung, Haff, Ingrid Hobæk, Hovig, Eivind, Hsieh, Ping-Han, Klambauer, Günter, Kuijjer, Marieke L, Lund-Andersen, Christin, Martini, Antonio, Minotto, Thomas, Pensar, Johan, Rand, Knut, Riccardi, Enrico, Robert, Philippe A, Rocha, Artur, Slabodkin, Andrei, Snapkov, Igor, Sollid, Ludvig M, Titov, Dmytro, Weber, Cédric R, Widrich, Michael, Yaari, Gur, Greiff, Victor, Sandve, Geir Kjetil
Published in Nature machine intelligence (01.11.2021)
Published in Nature machine intelligence (01.11.2021)
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Journal Article
Identifying elemental genomic track types and representing them uniformly
Gundersen, Sveinung, Kalaš, Matúš, Abul, Osman, Frigessi, Arnoldo, Hovig, Eivind, Sandve, Geir Kjetil
Published in BMC bioinformatics (30.12.2011)
Published in BMC bioinformatics (30.12.2011)
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Norwegian e-Infrastructure for Life Sciences (NeLS) [version 1; peer review: 2 approved]
Tekle, Kidane M, Gundersen, Sveinung, Klepper, Kjetil, Bongo, Lars Ailo, Raknes, Inge Alexander, Li, Xiaxi, Zhang, Wei, Andreetta, Christian, Mulugeta, Teshome Dagne, Kalaš, Matúš, Rye, Morten B, Hjerde, Erik, Antony Samy, Jeevan Karloss, Fornous, Ghislain, Azab, Abdulrahman, Våge, Dag Inge, Hovig, Eivind, Willassen, Nils Peder, Drabløs, Finn, Nygård, Ståle, Petersen, Kjell, Jonassen, Inge
Published in F1000 research (2018)
Published in F1000 research (2018)
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Journal Article
c-Myb Binding Sites in Haematopoietic Chromatin Landscapes
Bengtsen, Mads, Klepper, Kjetil, Gundersen, Sveinung, Cuervo, Ignacio, Drabløs, Finn, Hovig, Eivind, Sandve, Geir Kjetil, Gabrielsen, Odd Stokke, Eskeland, Ragnhild
Published in PloS one (24.07.2015)
Published in PloS one (24.07.2015)
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Journal Article
The differential disease regulome
Sandve, Geir K, Gundersen, Sveinung, Rydbeck, Halfdan, Glad, Ingrid K, Holden, Lars, Holden, Marit, Liestøl, Knut, Clancy, Trevor, Drabløs, Finn, Ferkingstad, Egil, Johansen, Morten, Nygaard, Vegard, Tøstesen, Eivind, Frigessi, Arnoldo, Hovig, Eivind
Published in BMC genomics (07.07.2011)
Published in BMC genomics (07.07.2011)
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JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles
Rauluseviciute, Ieva, Riudavets-Puig, Rafael, Blanc-Mathieu, Romain, Castro-Mondragon, Jaime A, Ferenc, Katalin, Kumar, Vipin, Lemma, Roza Berhanu, Lucas, Jérémy, Chèneby, Jeanne, Baranasic, Damir, Khan, Aziz, Fornes, Oriol, Gundersen, Sveinung, Johansen, Morten, Hovig, Eivind, Lenhard, Boris, Sandelin, Albin, Wasserman, Wyeth W, Parcy, François, Mathelier, Anthony
Published in Nucleic acids research (05.01.2024)
Published in Nucleic acids research (05.01.2024)
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Journal Article
hGSuite HyperBrowser: A web-based toolkit for hierarchical metadata-informed analysis of genomic tracks
Kalyanasundaram, Sumana, Lefol, Yohan, Gundersen, Sveinung, Rognes, Torbjørn, Alsøe, Lene, Nilsen, Hilde Loge, Hovig, Eivind, Sandve, Geir Kjetil, Domanska, Diana
Published in PloS one (19.07.2023)
Published in PloS one (19.07.2023)
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Journal Article
Abstract 2090: Comprehensive interrogation of gene lists from genome-scale cancer screens with oncoEnrichR
Nakken, Sigve, Gundersen, Sveinung, Bernal, Fabian L., Polychronopoulos, Dimitris, Hovig, Eivind, Wesche, Jørgen
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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Journal Article
HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization
Paulsen, Jonas, Sandve, Geir Kjetil, Gundersen, Sveinung, Lien, Tonje G, Trengereid, Kai, Hovig, Eivind
Published in Bioinformatics (01.06.2014)
Published in Bioinformatics (01.06.2014)
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Journal Article
The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update
Abueg, Linelle Ann L, Afgan, Enis, Allart, Olivier, Bacon, Wendi A, Baker, Dannon, Bassetti, Madeline, Bernt, Matthias, Blankenberg, Daniel, Bombarely, Aureliano, Bromhead, Catherine J, Burke, Melissa L, Čech, Martin, Chavero-Díez, María, Chilton, John M, Collins, Tyler J, Coraor, Nate, Cumbo, Fabio, Davis, John, De Geest, Paul F, Demko, Martin, Begines, José Manuel Domínguez, Doyle, Maria A, Droesbeke, Bert, Erxleben-Eggenhofer, Anika, Föll, Melanie C, Formenti, Giulio, Fouilloux, Anne, Gangazhe, Rendani, Genthon, Tanguy, Goecks, Jeremy, Beltran, Alejandra N Gonzalez, Goonasekera, Nuwan A, Grüning, Björn A, Guerler, Aysam, Gundersen, Sveinung, Gustafsson, Ove Johan Ragnar, Hall, Christina, Harrop, Thomas W, Hecht, Helge, Heidari, Alireza, Heyl, Florian, Hotz, Hans-Rudolf, Jagtap, Pratik D, Johnson, James E, Jossé, Marie, Jum’ah, Khaled, Kalaš, Matúš, Kamieniecka, Katarzyna, Kayikcioglu, Tunc, Konkol, Markus, Kostrykin, Leonid, Kucher, Natalie, Kumar, Anup, Kuntz, Mira, Lariviere, Delphine, Lazarus, Ross, Bras, Yvan Le, Corguillé, Gildas Le, Lee, Justin, Liborio, Leandro, Libouban, Romane, Tabernero, David López, Lopez-Delisle, Lucille, Los, Laila S, Mahmoud, Alexandru, Makunin, Igor, Marin, Pierre, Mok, Winnie, Moreno, Pablo A, Morier-Genoud, François, Mosher, Stephen, Müller, Teresa, Nelson, Tiffanie M, Oba, Asime J, Ostrovsky, Alexander, Polunina, Polina V, Price, Elliott J, Price, Gareth R, Rasche, Helena, Raubenolt, Bryan, Sargent, Luke, Savage, Michelle T, Savchenko, Volodymyr, Savchenko, Denys, Seguineau, Pauline, Serrano-Solano, Beatriz, Soranzo, Nicola, Syme, Anna E, Tangaro, Marco Antonio, Tekman, Mehmet, Cheng (Mike) Thang, Wai, Thanki, Anil S, Uhl, Michael, Vessio, Jenn, Videm, Pavankumar, Watson, Gregory R, Wolstencroft, Martin, Zambelli, Federico, Zierep, Paul, Zoabi, Rand
Published in Nucleic acids research (05.07.2024)
Published in Nucleic acids research (05.07.2024)
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Journal Article
Coloc-stats: a unified web interface to perform colocalization analysis of genomic features
Simovski, Boris, Kanduri, Chakravarthi, Gundersen, Sveinung, Titov, Dmytro, Domanska, Diana, Bock, Christoph, Bossini-Castillo, Lara, Chikina, Maria, Favorov, Alexander, Layer, Ryan M, Mironov, Andrey A, Quinlan, Aaron R, Sheffield, Nathan C, Trynka, Gosia, Sandve, Geir K
Published in Nucleic acids research (02.07.2018)
Published in Nucleic acids research (02.07.2018)
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Journal Article
The Genomic HyperBrowser: inferential genomics at the sequence level
Sandve, Geir K, Gundersen, Sveinung, Rydbeck, Halfdan, Glad, Ingrid K, Holden, Lars, Holden, Marit, Liestøl, Knut, Clancy, Trevor, Ferkingstad, Egil, Johansen, Morten, Nygaard, Vegard, Tøstesen, Eivind, Frigessi, Arnoldo, Hovig, Eivind
Published in Genome Biology (01.01.2010)
Published in Genome Biology (01.01.2010)
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Journal Article
The Genomic HyperBrowser: an analysis web server for genome-scale data
Sandve, Geir K, Gundersen, Sveinung, Johansen, Morten, Glad, Ingrid K, Gunathasan, Krishanthi, Holden, Lars, Holden, Marit, Liestøl, Knut, Nygård, Ståle, Nygaard, Vegard, Paulsen, Jonas, Rydbeck, Halfdan, Trengereid, Kai, Clancy, Trevor, Drabløs, Finn, Ferkingstad, Egil, Kalas, Matús, Lien, Tonje, Rye, Morten B, Frigessi, Arnoldo, Hovig, Eivind
Published in Nucleic acids research (01.07.2013)
Published in Nucleic acids research (01.07.2013)
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Journal Article
GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome
Simovski, Boris, Vodák, Daniel, Gundersen, Sveinung, Domanska, Diana, Azab, Abdulrahman, Holden, Lars, Holden, Marit, Grytten, Ivar, Rand, Knut, Drabløs, Finn, Johansen, Morten, Mora, Antonio, Lund-Andersen, Christin, Fromm, Bastian, Eskeland, Ragnhild, Gabrielsen, Odd Stokke, Ferkingstad, Egil, Nakken, Sigve, Bengtsen, Mads, Nederbragt, Alexander Johan, Thorarensen, Hildur Sif, Akse, Johannes Andreas, Glad, Ingrid, Hovig, Eivind, Sandve, Geir Kjetil
Published in Gigascience (01.07.2017)
Published in Gigascience (01.07.2017)
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Journal Article
Norwegian e-Infrastructure for Life Sciences (NeLS)
Tekle, Kidane M, Gundersen, Sveinung, Klepper, Kjetil, Bongo, Lars Ailo, Raknes, Inge Alexander, Li, Xiaxi, Zhang, Wei, Andreetta, Christian, Mulugeta, Teshome Dagne, Kalaš, Matúš, Rye, Morten B, Hjerde, Erik, Antony Samy, Jeevan Karloss, Fornous, Ghislain, Azab, Abdulrahman, Våge, Dag Inge, Hovig, Eivind, Willassen, Nils Peder, Drabløs, Finn, Nygård, Ståle, Petersen, Kjell, Jonassen, Inge
Published in F1000 research (2018)
Published in F1000 research (2018)
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Journal Article
The Genomic HyperBrowser: an analysis web server for genome-scale data
Sandve, Geir Kjetil, Gundersen, Sveinung, Johansen, Morten, Glad, Ingrid Kristine, Gunathasan, Krishanthi, Holden, Lars, Holden, Marit, Liestøl, Knut, Nygård, Ståle, Nygaard, Vegard, Paulsen, Jonas, Rydbeck, Halfdan, Trengereid, Kai, Clancy, Trevor, Drabløs, Finn, Ferkingstad, Egil, Kalaš, Matúš, Lien, Tonje Gulbrandsen, Rye, Morten Beck, Frigessi, Arnoldo, Hovig, Johannes Eivind
Published in Nucleic acids research (2013)
Published in Nucleic acids research (2013)
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