Integrated intra‐ and intercellular signaling knowledge for multicellular omics analysis
Türei, Dénes, Valdeolivas, Alberto, Gul, Lejla, Palacio‐Escat, Nicolàs, Klein, Michal, Ivanova, Olga, Ölbei, Márton, Gábor, Attila, Theis, Fabian, Módos, Dezső, Korcsmáros, Tamás, Saez‐Rodriguez, Julio
Published in Molecular systems biology (01.03.2021)
Published in Molecular systems biology (01.03.2021)
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Journal Article
SARS-CoV-2 Causes a Different Cytokine Response Compared to Other Cytokine Storm-Causing Respiratory Viruses in Severely Ill Patients
Olbei, Marton, Hautefort, Isabelle, Modos, Dezso, Treveil, Agatha, Poletti, Martina, Gul, Lejla, Shannon-Lowe, Claire D, Korcsmaros, Tamas
Published in Frontiers in immunology (01.03.2021)
Published in Frontiers in immunology (01.03.2021)
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Journal Article
Extracellular vesicles produced by the human commensal gut bacterium Bacteroides thetaiotaomicron affect host immune pathways in a cell‐type specific manner that are altered in inflammatory bowel disease
Gul, Lejla, Modos, Dezso, Fonseca, Sonia, Madgwick, Matthew, Thomas, John P., Sudhakar, Padhmanand, Booth, Catherine, Stentz, Régis, Carding, Simon R., Korcsmaros, Tamas
Published in Journal of extracellular vesicles (01.01.2022)
Published in Journal of extracellular vesicles (01.01.2022)
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Journal Article
ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways
Treveil, Agatha, Bohar, Balazs, Sudhakar, Padhmanand, Gul, Lejla, Csabai, Luca, Olbei, Marton, Poletti, Martina, Madgwick, Matthew, Andrighetti, Tahila, Hautefort, Isabelle, Modos, Dezso, Korcsmaros, Tamas
Published in PLoS computational biology (01.02.2021)
Published in PLoS computational biology (01.02.2021)
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Journal Article
Computational prediction and experimental validation of Salmonella Typhimurium SopE-mediated fine-tuning of autophagy in intestinal epithelial cells
Demeter, Amanda, Jacomin, Anne-Claire, Gul, Lejla, Lister, Ashleigh, Lipscombe, James, Invernizzi, Rachele, Branchu, Priscilla, Macaulay, Iain, Nezis, Ioannis P., Kingsley, Robert A., Korcsmaros, Tamas, Hautefort, Isabelle
Published in Frontiers in cellular and infection microbiology (17.08.2022)
Published in Frontiers in cellular and infection microbiology (17.08.2022)
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Journal Article
Integrative analysis of Paneth cell proteomic and transcriptomic data from intestinal organoids reveals functional processes dependent on autophagy
Jones, Emily J, Matthews, Zoe J, Gul, Lejla, Sudhakar, Padhmanand, Treveil, Agatha, Divekar, Devina, Buck, Jasmine, Wrzesinski, Tomasz, Jefferson, Matthew, Armstrong, Stuart D, Hall, Lindsay J, Watson, Alastair J M, Carding, Simon R, Haerty, Wilfried, Di Palma, Federica, Mayer, Ulrike, Powell, Penny P, Hautefort, Isabelle, Wileman, Tom, Korcsmaros, Tamas
Published in Disease models & mechanisms (01.03.2019)
Published in Disease models & mechanisms (01.03.2019)
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Journal Article
CytokineLink: A Cytokine Communication Map to Analyse Immune Responses-Case Studies in Inflammatory Bowel Disease and COVID-19
Olbei, Marton, Thomas, John P, Hautefort, Isabelle, Treveil, Agatha, Bohar, Balazs, Madgwick, Matthew, Gul, Lejla, Csabai, Luca, Modos, Dezso, Korcsmaros, Tamas
Published in Cells (Basel, Switzerland) (29.08.2021)
Published in Cells (Basel, Switzerland) (29.08.2021)
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Journal Article
What We Learned From Big Data for Autophagy Research
Jacomin, Anne-Claire, Gul, Lejla, Sudhakar, Padhmanand, Korcsmaros, Tamas, Nezis, Ioannis P
Published in Frontiers in cell and developmental biology (17.08.2018)
Published in Frontiers in cell and developmental biology (17.08.2018)
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Journal Article
340 BEYOND ATG16L1: MULTIPLE NON-CODING SNPS PERTURB AUTOPHAGY AND STRATIFY IBD PATIENTS INTO DISTINCT SUBGROUPS
Csabai, Luca, Modos, Dezso, Bohar, Balazs, Olbei, Marton, Gul, Lejla, Thomas, John, Verstockt, Bram, Korcsmaros, Tamas
Published in Gastroenterology (New York, N.Y. 1943) (18.05.2024)
Published in Gastroenterology (New York, N.Y. 1943) (18.05.2024)
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Journal Article
First person – Emily Jones, Zoe Matthews and Lejla Gul
Published in Disease models & mechanisms
(01.03.2019)
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Journal Article
Integrating multi-omics to unravel host-microbiome interactions in inflammatory bowel disease
Zhang, Yiran, Thomas, John P., Korcsmaros, Tamas, Gul, Lejla
Published in Cell reports. Medicine (17.09.2024)
Published in Cell reports. Medicine (17.09.2024)
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Journal Article
SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks
Csabai, Luca, Fazekas, Dávid, Kadlecsik, Tamás, Szalay-Bekő, Máté, Bohár, Balázs, Madgwick, Matthew, Módos, Dezső, Ölbei, Márton, Gul, Lejla, Sudhakar, Padhmanand, Kubisch, János, Oyeyemi, Oyebode James, Liska, Orsolya, Ari, Eszter, Hotzi, Bernadette, Billes, Viktor A, Molnár, Eszter, Földvári-Nagy, László, Csályi, Kitti, Demeter, Amanda, Pápai, Nóra, Koltai, Mihály, Varga, Máté, Lenti, Katalin, Farkas, Illés J, Türei, Dénes, Csermely, Péter, Vellai, Tibor, Korcsmáros, Tamás
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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Journal Article
AutophagyNet: high-resolution data source for the analysis of autophagy and its regulation
Csabai, Luca, Bohár, Balázs, Türei, Dénes, Prabhu, Sowmya, Földvári-Nagy, László, Madgwick, Matthew, Fazekas, Dávid, Módos, Dezső, Ölbei, Márton, Halka, Themis, Poletti, Martina, Kornilova, Polina, Kadlecsik, Tamás, Demeter, Amanda, Szalay-Bekő, Máté, Kapuy, Orsolya, Lenti, Katalin, Vellai, Tibor, Gul, Lejla, Korcsmáros, Tamás
Published in Autophagy (02.01.2024)
Published in Autophagy (02.01.2024)
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Journal Article
795: AN INTERLEUKIN 22/CHEMOKINE AXIS DRIVES COLONIC NEUTROPHIL RECRUITMENT AND TREATMENT RESISTANCE IN ULCERATIVE COLITIS
Pavlidis, Polychronis, Tsakmaki, Anastasia, Pantazi, Eirini, Li, Katherine, Cozzetto, Domenico, Yang, Feifei, Lo, Jonathan W., Alberts, Ellie, Sa, Ana Caroline Costa, Niazi, Umar, Friedman, Joshua, Long, Anna, Ding, Yuchun, Carey, Christopher, Lamb, Christopher A., Saqi, Mansoor, Madgwick, Matthew, Gul, Lejla, Treveil, Agatha, Korcsmaros, Tamas, Macdonald, Thomas T., Lord, Graham, Bewick, Gavin, Powell, Nick
Published in Gastroenterology (New York, N.Y. 1943) (01.05.2022)
Published in Gastroenterology (New York, N.Y. 1943) (01.05.2022)
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Journal Article
Sa1108 – Analysing Intestinal Organoids in a Multi-Omics, Systems Biology Framework to Investigate Functional Processes Affected by Autophagy in Crohn's Disease
Treveil, Agatha, Gul, Lejla, Matthews, Zoe, Sudhakar, Padhmanand, Wrzesinski, Tomasz, Buck, Jasmine, Hautefort, Isabelle, Divekar, Devina, Hall, Lindsay, Armstrong, Stuart, Watson, Alastair, Carding, Simon, Mayer, Ulrike, Powell, Penny, Di-Palma, Federica, Haerty, Wilfried, Wileman, Tom, Korcsmaros, Tamas
Published in Gastroenterology (New York, N.Y. 1943) (01.05.2019)
Published in Gastroenterology (New York, N.Y. 1943) (01.05.2019)
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Journal Article
Extracellular vesicles produced by the human commensal gut bacterium Bacteroides thetaiotaomicron affect host immune pathways in a cell-type specific manner that are altered in inflammatory bowel disease
Gul, Lejla, Modos, Dezso, Fonseca, Sonia, Madgwick, Matthew, Thomas, John P, Padhmanand Sudhakar, Stentz, Régis, Carding, Simon R, Korcsmaros, Tamas
Published in bioRxiv (21.03.2021)
Published in bioRxiv (21.03.2021)
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Paper
CytokineLink: a cytokine communication map to analyse immune responses in inflammatory and infectious diseases
Olbei, Marton L, Thomas, John, Hautefort, Isabelle, Treveil, Agatha, Bohar, Balazs, Madgwick, Matthew, Potari-Gul, Lejla, Csabai, Luca, Modos, Dezso, Korcsmaros, Tamas
Published in bioRxiv (11.08.2021)
Published in bioRxiv (11.08.2021)
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