Towards a complete map of the human long non-coding RNA transcriptome
Uszczynska-Ratajczak, Barbara, Lagarde, Julien, Frankish, Adam, Guigó, Roderic, Johnson, Rory
Published in Nature reviews. Genetics (01.09.2018)
Published in Nature reviews. Genetics (01.09.2018)
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The GEM mapper: fast, accurate and versatile alignment by filtration
Marco-Sola, Santiago, Sammeth, Michael, Guigó, Roderic, Ribeca, Paolo
Published in Nature methods (01.12.2012)
Published in Nature methods (01.12.2012)
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Comparative transcriptomics in human and mouse
Breschi, Alessandra, Gingeras, Thomas R., Guigó, Roderic
Published in Nature reviews. Genetics (01.07.2017)
Published in Nature reviews. Genetics (01.07.2017)
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The GTEx Consortium atlas of genetic regulatory effects across human tissues
Aguet, François, Anand, Shankara, Ardlie, Kristin G., Gabriel, Stacey, Getz, Gad A., Graubert, Aaron, Hadley, Kane, Handsaker, Robert E., Huang, Katherine H., Kashin, Seva, Li, Xiao, MacArthur, Daniel G., Meier, Samuel R., Nedzel, Jared L., Nguyen, Duyen T., Segrè, Ayellet V., Todres, Ellen, Balliu, Brunilda, Barbeira, Alvaro N., Battle, Alexis, Bonazzola, Rodrigo, Brown, Andrew, Brown, Christopher D., Castel, Stephane E., Conrad, Donald F., Cotter, Daniel J., Cox, Nancy, Das, Sayantan, de Goede, Olivia M., Dermitzakis, Emmanouil T., Einson, Jonah, Engelhardt, Barbara E., Eskin, Eleazar, Eulalio, Tiffany Y., Ferraro, Nicole M., Flynn, Elise D., Fresard, Laure, Gamazon, Eric R., Garrido-Martín, Diego, Gay, Nicole R., Gloudemans, Michael J., Guigó, Roderic, Hame, Andrew R., He, Yuan, Hoffman, Paul J., Hormozdiari, Farhad, Hou, Lei, Im, Hae Kyung, Jo, Brian, Kasela, Silva, Kellis, Manolis, Kim-Hellmuth, Sarah, Kwong, Alan, Lappalainen, Tuuli, Li, Xin, Liang, Yanyu, Mangul, Serghei, Mohammadi, Pejman, Montgomery, Stephen B., Muñoz-Aguirre, Manuel, Nachun, Daniel C., Nobel, Andrew B., Oliva, Meritxell, Park, YoSon, Park, Yongjin, Parsana, Princy, Rao, Abhiram S., Reverter, Ferran, Rouhana, John M., Sabatti, Chiara, Saha, Ashis, Stephens, Matthew, Stranger, Barbara E., Strober, Benjamin J., Teran, Nicole A., Viñuela, Ana, Wang, Gao, Wen, Xiaoquan, Wright, Fred, Wucher, Valentin, Zou, Yuxin, Ferreira, Pedro G., Li, Gen, Melé, Marta, Yeger-Lotem, Esti, Barcus, Mary E., Bradbury, Debra, Krubit, Tanya, McLean, Jeffrey A., Qi, Liqun, Robinson, Karna, Roche, Nancy V., Smith, Anna M., Sobin, Leslie, Tabor, David E., Undale, Anita, Bridge, Jason, Brigham, Lori E., Foster, Barbara A., Gillard, Bryan M.
Published in Science (American Association for the Advancement of Science) (11.09.2020)
Published in Science (American Association for the Advancement of Science) (11.09.2020)
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Cytoplasmic long noncoding RNAs are frequently bound to and degraded at ribosomes in human cells
Carlevaro-Fita, Joana, Rahim, Anisa, Guigó, Roderic, Vardy, Leah A, Johnson, Rory
Published in RNA (Cambridge) (01.06.2016)
Published in RNA (Cambridge) (01.06.2016)
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Fast computation and applications of genome mappability
Derrien, Thomas, Estellé, Jordi, Marco Sola, Santiago, Knowles, David G, Raineri, Emanuele, Guigó, Roderic, Ribeca, Paolo
Published in PloS one (19.01.2012)
Published in PloS one (19.01.2012)
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GENCODE reference annotation for the human and mouse genomes
Frankish, Adam, Diekhans, Mark, Ferreira, Anne-Maud, Johnson, Rory, Jungreis, Irwin, Loveland, Jane, Mudge, Jonathan M, Sisu, Cristina, Wright, James, Armstrong, Joel, Barnes, If, Berry, Andrew, Bignell, Alexandra, Carbonell Sala, Silvia, Chrast, Jacqueline, Cunningham, Fiona, Di Domenico, Tomás, Donaldson, Sarah, Fiddes, Ian T, García Girón, Carlos, Gonzalez, Jose Manuel, Grego, Tiago, Hardy, Matthew, Hourlier, Thibaut, Hunt, Toby, Izuogu, Osagie G, Lagarde, Julien, Martin, Fergal J, Martínez, Laura, Mohanan, Shamika, Muir, Paul, Navarro, Fabio C P, Parker, Anne, Pei, Baikang, Pozo, Fernando, Ruffier, Magali, Schmitt, Bianca M, Stapleton, Eloise, Suner, Marie-Marthe, Sycheva, Irina, Uszczynska-Ratajczak, Barbara, Xu, Jinuri, Yates, Andrew, Zerbino, Daniel, Zhang, Yan, Aken, Bronwen, Choudhary, Jyoti S, Gerstein, Mark, Guigó, Roderic, Hubbard, Tim J P, Kellis, Manolis, Paten, Benedict, Reymond, Alexandre, Tress, Michael L, Flicek, Paul
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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The impact of sex on gene expression across human tissues
Oliva, Meritxell, Muñoz-Aguirre, Manuel, Kim-Hellmuth, Sarah, Wucher, Valentin, Gewirtz, Ariel D H, Cotter, Daniel J, Parsana, Princy, Kasela, Silva, Balliu, Brunilda, Viñuela, Ana, Castel, Stephane E, Mohammadi, Pejman, Aguet, François, Zou, Yuxin, Khramtsova, Ekaterina A, Skol, Andrew D, Garrido-Martín, Diego, Reverter, Ferran, Brown, Andrew, Evans, Patrick, Gamazon, Eric R, Payne, Anthony, Bonazzola, Rodrigo, Barbeira, Alvaro N, Hamel, Andrew R, Martinez-Perez, Angel, Soria, José Manuel, Pierce, Brandon L, Stephens, Matthew, Eskin, Eleazar, Dermitzakis, Emmanouil T, Segrè, Ayellet V, Im, Hae Kyung, Engelhardt, Barbara E, Ardlie, Kristin G, Montgomery, Stephen B, Battle, Alexis J, Lappalainen, Tuuli, Guigó, Roderic, Stranger, Barbara E
Published in Science (American Association for the Advancement of Science) (11.09.2020)
Published in Science (American Association for the Advancement of Science) (11.09.2020)
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Genomic and functional conservation of lncRNAs: lessons from flies
Camilleri-Robles, Carlos, Amador, Raziel, Klein, Cecilia C., Guigó, Roderic, Corominas, Montserrat, Ruiz-Romero, Marina
Published in Mammalian genome (01.06.2022)
Published in Mammalian genome (01.06.2022)
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LncATLAS database for subcellular localization of long noncoding RNAs
Mas-Ponte, David, Carlevaro-Fita, Joana, Palumbo, Emilio, Hermoso Pulido, Toni, Guigo, Roderic, Johnson, Rory
Published in RNA (Cambridge) (01.07.2017)
Published in RNA (Cambridge) (01.07.2017)
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The human transcriptome across tissues and individuals
Melé, Marta, Ferreira, Pedro G., Reverter, Ferran, DeLuca, David S., Monlong, Jean, Sammeth, Michael, Young, Taylor R., Goldmann, Jakob M, Pervouchine, Dmitri D., Sullivan, Timothy J., Johnson, Rory, Segrè, Ayellet V., Djebali, Sarah, Niarchou, Anastasia, Wright, Fred A., Lappalainen, Tuuli, Calvo, Miquel, Getz, Gad, Dermitzakis, Emmanouil T., Ardlie, Kristin G., Guigó, Roderic
Published in Science (American Association for the Advancement of Science) (08.05.2015)
Published in Science (American Association for the Advancement of Science) (08.05.2015)
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Systematic evaluation of spliced alignment programs for RNA-seq data
Engström, Pär G, Steijger, Tamara, Sipos, Botond, Grant, Gregory R, Kahles, André, Rätsch, Gunnar, Goldman, Nick, Hubbard, Tim J, Harrow, Jennifer, Guigó, Roderic, Bertone, Paul
Published in Nature methods (01.12.2013)
Published in Nature methods (01.12.2013)
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Integrative transcriptomic analysis suggests new autoregulatory splicing events coupled with nonsense-mediated mRNA decay
Pervouchine, Dmitri, Popov, Yaroslav, Berry, Andy, Borsari, Beatrice, Frankish, Adam, Guigó, Roderic
Published in Nucleic acids research (04.06.2019)
Published in Nucleic acids research (04.06.2019)
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The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
Ardlie, Kristin G., Deluca, David S., Segrè, Ayellet V., Sullivan, Timothy J., Young, Taylor R., Gelfand, Ellen T., Trowbridge, Casandra A., Maller, Julian B., Tukiainen, Taru, Lek, Monkol, Ward, Lucas D., Kheradpour, Pouya, Iriarte, Benjamin, Meng, Yan, Palmer, Cameron D., Esko, Tõnu, Winckler, Wendy, Hirschhorn, Joel N., Kellis, Manolis, MacArthur, Daniel G., Getz, Gad, Shabalin, Andrey A., Li, Gen, Zhou, Yi-Hui, Nobel, Andrew B., Rusyn, Ivan, Wright, Fred A., Lappalainen, Tuuli, Ferreira, Pedro G., Ongen, Halit, Rivas, Manuel A., Battle, Alexis, Mostafavi, Sara, Monlong, Jean, Sammeth, Michael, Mele, Marta, Reverter, Ferran, Goldmann, Jakob M., Koller, Daphne, Guigó, Roderic, McCarthy, Mark I., Dermitzakis, Emmanouil T., Gamazon, Eric R., Im, Hae Kyung, Konkashbaev, Anuar, Nicolae, Dan L., Cox, Nancy J., Flutre, Timothée, Wen, Xiaoquan, Stephens, Matthew, Pritchard, Jonathan K., Tu, Zhidong, Zhang, Bin, Huang, Tao, Long, Quan, Lin, Luan, Yang, Jialiang, Zhu, Jun, Liu, Jun, Brown, Amanda, Mestichelli, Bernadette, Tidwell, Denee, Lo, Edmund, Salvatore, Mike, Shad, Saboor, Thomas, Jeffrey A., Lonsdale, John T., Moser, Michael T., Gillard, Bryan M., Karasik, Ellen, Ramsey, Kimberly, Choi, Christopher, Foster, Barbara A., Syron, John, Fleming, Johnell, Magazine, Harold, Hasz, Rick, Walters, Gary D., Bridge, Jason P., Miklos, Mark, Sullivan, Susan, Barker, Laura K., Traino, Heather M., Mosavel, Maghboeba, Siminoff, Laura A., Valley, Dana R., Rohrer, Daniel C., Jewell, Scott D., Branton, Philip A., Sobin, Leslie H., Barcus, Mary, Qi, Liqun, McLean, Jeffrey, Hariharan, Pushpa, Um, Ki Sung, Wu, Shenpei, Tabor, David, Shive, Charles, Smith, Anna M., Buia, Stephen A.
Published in Science (American Association for the Advancement of Science) (08.05.2015)
Published in Science (American Association for the Advancement of Science) (08.05.2015)
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Day-night and seasonal variation of human gene expression across tissues
Wucher, Valentin, Sodaei, Reza, Amador, Raziel, Irimia, Manuel, Guigó, Roderic
Published in PLoS biology (06.02.2023)
Published in PLoS biology (06.02.2023)
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A general definition and nomenclature for alternative splicing events
Sammeth, Michael, Foissac, Sylvain, Guigó, Roderic
Published in PLoS computational biology (08.08.2008)
Published in PLoS computational biology (08.08.2008)
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