Microbiome-derived inosine modulates response to checkpoint inhibitor immunotherapy
Mager, Lukas F, Burkhard, Regula, Pett, Nicola, Cooke, Noah C A, Brown, Kirsty, Ramay, Hena, Paik, Seungil, Stagg, John, Groves, Ryan A, Gallo, Marco, Lewis, Ian A, Geuking, Markus B, McCoy, Kathy D
Published in Science (American Association for the Advancement of Science) (18.09.2020)
Published in Science (American Association for the Advancement of Science) (18.09.2020)
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Journal Article
Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep-sea sediments
Dong, Xiyang, Greening, Chris, Rattray, Jayne E., Chakraborty, Anirban, Chuvochina, Maria, Mayumi, Daisuke, Dolfing, Jan, Li, Carmen, Brooks, James M., Bernard, Bernie B., Groves, Ryan A., Lewis, Ian A., Hubert, Casey R. J.
Published in Nature communications (18.04.2019)
Published in Nature communications (18.04.2019)
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Journal Article
Staphylococcus aureus induces an itaconate-dominated immunometabolic response that drives biofilm formation
Tomlinson, Kira L., Lung, Tania Wong Fok, Dach, Felix, Annavajhala, Medini K., Gabryszewski, Stanislaw J., Groves, Ryan A., Drikic, Marija, Francoeur, Nancy J., Sridhar, Shwetha H., Smith, Melissa L., Khanal, Sara, Britto, Clemente J., Sebra, Robert, Lewis, Ian, Uhlemann, Anne-Catrin, Kahl, Barbara C., Prince, Alice S., Riquelme, Sebastián A.
Published in Nature communications (03.03.2021)
Published in Nature communications (03.03.2021)
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Journal Article
Thermogenic hydrocarbon biodegradation by diverse depth-stratified microbial populations at a Scotian Basin cold seep
Dong, Xiyang, Rattray, Jayne E., Campbell, D. Calvin, Webb, Jamie, Chakraborty, Anirban, Adebayo, Oyeboade, Matthews, Stuart, Li, Carmen, Fowler, Martin, Morrison, Natasha M., MacDonald, Adam, Groves, Ryan A., Lewis, Ian A., Wang, Scott H., Mayumi, Daisuke, Greening, Chris, Hubert, Casey R. J.
Published in Nature communications (17.11.2020)
Published in Nature communications (17.11.2020)
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Journal Article
Metabolic preference assay for rapid diagnosis of bloodstream infections
Rydzak, Thomas, Groves, Ryan A., Zhang, Ruichuan, Aburashed, Raied, Pushpker, Rajnigandha, Mapar, Maryam, Lewis, Ian A.
Published in Nature communications (28.04.2022)
Published in Nature communications (28.04.2022)
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Journal Article
Biomarker enrichment medium: A defined medium for metabolomic analysis of microbial pathogens
Mapar, Maryam, Rydzak, Thomas, Groves, Ryan A., Lewis, Ian A.
Published in Frontiers in microbiology (22.07.2022)
Published in Frontiers in microbiology (22.07.2022)
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Journal Article
An N-methyltransferase from Ephedra sinica catalyzing the formation of ephedrine and pseudoephedrine enables microbial phenylalkylamine production
Morris, Jeremy S., Groves, Ryan A., Hagel, Jillian M., Facchini, Peter J.
Published in The Journal of biological chemistry (31.08.2018)
Published in The Journal of biological chemistry (31.08.2018)
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Journal Article
Untargeted Metabolomics Investigation on Selenite Reduction to Elemental Selenium by Bacillus mycoides SeITE01
Baggio, Greta, Groves, Ryan A, Chignola, Roberto, Piacenza, Elena, Presentato, Alessandro, Lewis, Ian A, Lampis, Silvia, Vallini, Giovanni, Turner, Raymond J
Published in Frontiers in microbiology (16.09.2021)
Published in Frontiers in microbiology (16.09.2021)
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Journal Article
Microbial containment device: A platform for comprehensive analysis of microbial metabolism without sample preparation
Mohammadi, Mehdi, Bishop, Stephanie L., Aburashed, Raied, Luqman, Saad, Groves, Ryan A., Bihan, Dominique G., Rydzak, Thomas, Lewis, Ian A.
Published in Frontiers in microbiology (13.09.2022)
Published in Frontiers in microbiology (13.09.2022)
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Journal Article
Transcriptome profiling of khat (Catha edulis) and Ephedra sinica reveals gene candidates potentially involved in amphetamine-type alkaloid biosynthesis
Groves, Ryan A, Hagel, Jillian M, Zhang, Ye, Kilpatrick, Korey, Levy, Asaf, Marsolais, Frédéric, Lewinsohn, Efraim, Sensen, Christoph W, Facchini, Peter J
Published in PloS one (25.03.2015)
Published in PloS one (25.03.2015)
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Journal Article
Rapid LC–MS assay for targeted metabolite quantification by serial injection into isocratic gradients
Groves, Ryan A., Chan, Carly C. Y., Wildman, Spencer D., Gregson, Daniel B., Rydzak, Thomas, Lewis, Ian A.
Published in Analytical and bioanalytical chemistry (01.01.2023)
Published in Analytical and bioanalytical chemistry (01.01.2023)
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Journal Article
Methods for Quantifying the Metabolic Boundary Fluxes of Cell Cultures in Large Cohorts by High-Resolution Hydrophilic Liquid Chromatography Mass Spectrometry
Groves, Ryan A., Mapar, Maryam, Aburashed, Raied, Ponce, Luis F., Bishop, Stephanie L., Rydzak, Thomas, Drikic, Marija, Bihan, Dominique G., Benediktsson, Hallgrimur, Clement, Fiona, Gregson, Daniel B., Lewis, Ian A.
Published in Analytical chemistry (Washington) (28.06.2022)
Published in Analytical chemistry (Washington) (28.06.2022)
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Journal Article
Bacterial cyclic diguanylate signaling networks sense temperature
Almblad, Henrik, Randall, Trevor E., Liu, Fanny, Leblanc, Katherine, Groves, Ryan A., Kittichotirat, Weerayuth, Winsor, Geoffrey L., Fournier, Nicolas, Au, Emily, Groizeleau, Julie, Rich, Jacquelyn D., Lou, Yuefei, Granton, Elise, Jennings, Laura K., Singletary, Larissa A., Winstone, Tara M. L., Good, Nathan M., Bumgarner, Roger E., Hynes, Michael F., Singh, Manu, Stietz, Maria Silvina, Brinkman, Fiona S. L., Kumar, Ayush, Brassinga, Ann Karen Cornelia, Parsek, Matthew R., Tseng, Boo Shan, Lewis, Ian A., Yipp, Bryan G., MacCallum, Justin L., Harrison, Joe Jonathan
Published in Nature communications (31.03.2021)
Published in Nature communications (31.03.2021)
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Journal Article
Iron Sequestration in Microbiota Biofilms As A Novel Strategy for Treating Inflammatory Bowel Disease
Motta, Jean-Paul, Allain, Thibault, Green-Harrison, Luke E, Groves, Ryan A, Feener, Troy, Ramay, Hena, Beck, Paul L, Lewis, Ian A, Wallace, John L, Buret, Andre G
Published in Inflammatory bowel diseases (08.06.2018)
Published in Inflammatory bowel diseases (08.06.2018)
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Journal Article
PelX is a UDP-N-acetylglucosamine C4-epimerase involved in Pel polysaccharide–dependent biofilm formation
Marmont, Lindsey S., Whitfield, Gregory B., Pfoh, Roland, Williams, Rohan J., Randall, Trevor E., Ostaszewski, Alexandra, Razvi, Erum, Groves, Ryan A., Robinson, Howard, Nitz, Mark, Parsek, Matthew R., Lewis, Ian A., Whitney, John C., Harrison, Joe J., Howell, P. Lynne
Published in The Journal of biological chemistry (21.08.2020)
Published in The Journal of biological chemistry (21.08.2020)
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Journal Article
Stirred suspension bioreactors maintain naïve pluripotency of human pluripotent stem cells
Rohani, Leili, Borys, Breanna S., Razian, Golsa, Naghsh, Pooyan, Liu, Shiying, Johnson, Adiv A., Machiraju, Pranav, Holland, Heidrun, Lewis, Ian A., Groves, Ryan A., Toms, Derek, Gordon, Paul M. K., Li, Joyce W., So, Tania, Dang, Tiffany, Kallos, Michael S., Rancourt, Derrick E.
Published in Communications biology (07.09.2020)
Published in Communications biology (07.09.2020)
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Journal Article
SCALiR: a web application for automating absolute quantification of mass spectrometry-based metabolomics data
Bishop, Stephanie L, Ponce-Alvarez, Luis F, Wacker, Soren, Groves, Ryan A, Lewis, Ian A
Published in bioRxiv (16.08.2023)
Published in bioRxiv (16.08.2023)
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Journal Article
Mo1931 – Urine Metabolomic Signatures Differentiate Pregnancy from the Non-Pregnant State and Differ in Pregnant Patients with Crohn’s Disease Compared with Ulcerative Colitis
Seow, Cynthia H., Jijon, Humberto, Groves, Ryan A., Sharifi, Nastaran, Bindra, Gurmeet K., Panaccione, Remo, Swain, Mark G., Beck, Paul L., Lewis, Ian, McCoy, Kathy
Published in Gastroenterology (New York, N.Y. 1943) (01.05.2019)
Published in Gastroenterology (New York, N.Y. 1943) (01.05.2019)
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Journal Article
PelX is a UDP-N-acetylglucosamine C4-epimerase involved in Pel polysaccharide-dependent biofilm formation
Marmont, Lindsey S, Whitfield, Gregory B, Pfoh, Roland, Williams, Rohan J, Randall, Trevor E, Ostaszewski, Alexandra, Razvi, Erum, Groves, Ryan A, Robinson, Howard, Nitz, Mark, Parsek, Matthew R, Lewis, Ian A, Whitney, John C, Harrison, Joe J, Howell, P Lynne
Published in The Journal of biological chemistry (21.08.2020)
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Published in The Journal of biological chemistry (21.08.2020)
Journal Article