Detecting natural selection in genomic data
Vitti, Joseph J, Grossman, Sharon R, Sabeti, Pardis C
Published in Annual review of genetics (01.01.2013)
Published in Annual review of genetics (01.01.2013)
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RNA-RNA Interactions Enable Specific Targeting of Noncoding RNAs to Nascent Pre-mRNAs and Chromatin Sites
Engreitz, Jesse M., Sirokman, Klara, McDonel, Patrick, Shishkin, Alexander A., Surka, Christine, Russell, Pamela, Grossman, Sharon R., Chow, Amy Y., Guttman, Mitchell, Lander, Eric S.
Published in Cell (25.09.2014)
Published in Cell (25.09.2014)
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Journal Article
Activity-by-contact model of enhancer–promoter regulation from thousands of CRISPR perturbations
Fulco, Charles P., Nasser, Joseph, Jones, Thouis R., Munson, Glen, Bergman, Drew T., Subramanian, Vidya, Grossman, Sharon R., Anyoha, Rockwell, Doughty, Benjamin R., Patwardhan, Tejal A., Nguyen, Tung H., Kane, Michael, Perez, Elizabeth M., Durand, Neva C., Lareau, Caleb A., Stamenova, Elena K., Aiden, Erez Lieberman, Lander, Eric S., Engreitz, Jesse M.
Published in Nature genetics (01.12.2019)
Published in Nature genetics (01.12.2019)
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Journal Article
Detecting Novel Associations in Large Data Sets
Reshef, David N., Reshef, Yakir A., Finucane, Hilary K., Grossman, Sharon R., McVean, Gilean, Turnbaugh, Peter J., Lander, Eric S., Mitzenmacher, Michael, Sabeti, Pardis C.
Published in Science (American Association for the Advancement of Science) (16.12.2011)
Published in Science (American Association for the Advancement of Science) (16.12.2011)
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Journal Article
Systematic dissection of genomic features determining transcription factor binding and enhancer function
Grossman, Sharon R., Zhang, Xiaolan, Wang, Li, Engreitz, Jesse, Melnikov, Alexandre, Rogov, Peter, Tewhey, Ryan, Isakova, Alina, Deplancke, Bart, Bernstein, Bradley E., Mikkelsen, Tarjei S., Lander, Eric S.
Published in Proceedings of the National Academy of Sciences - PNAS (14.02.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (14.02.2017)
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Journal Article
Identifying Recent Adaptations in Large-Scale Genomic Data
Grossman, Sharon R., Andersen, Kristian G., Shlyakhter, Ilya, Tabrizi, Shervin, Winnicki, Sarah, Yen, Angela, Park, Daniel J., Griesemer, Dustin, Karlsson, Elinor K., Wong, Sunny H., Cabili, Moran, Adegbola, Richard A., Bamezai, Rameshwar N.K., Hill, Adrian V.S., Vannberg, Fredrik O., Rinn, John L., Lander, Eric S., Schaffner, Stephen F., Sabeti, Pardis C.
Published in Cell (14.02.2013)
Published in Cell (14.02.2013)
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Journal Article
Composite of Multiple Signals Distinguishes Causal Variants in Regions of Positive Selection
Grossman, Sharon R, Shylakhter, Ilya, Karlsson, Elinor K, Byrne, Elizabeth H, Morales, Shannon, Frieden, Gabriel, Hostetter, Elizabeth, Angelino, Elaine, Garber, Manuel, Zuk, Or, Lander, Eric S, Schaffner, Stephen F, Sabeti, Pardis C
Published in Science (American Association for the Advancement of Science) (12.02.2010)
Published in Science (American Association for the Advancement of Science) (12.02.2010)
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Detecting genome-wide directional effects of transcription factor binding on polygenic disease risk
Reshef, Yakir A., Finucane, Hilary K., Kelley, David R., Gusev, Alexander, Kotliar, Dylan, Ulirsch, Jacob C., Hormozdiari, Farhad, Nasser, Joseph, O’Connor, Luke, van de Geijn, Bryce, Loh, Po-Ru, Grossman, Sharon R., Bhatia, Gaurav, Gazal, Steven, Palamara, Pier Francesco, Pinello, Luca, Patterson, Nick, Adams, Ryan P., Price, Alkes L
Published in Nature genetics (01.10.2018)
Published in Nature genetics (01.10.2018)
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Genome-wide scans provide evidence for positive selection of genes implicated in Lassa fever
Andersen, Kristian G., Shylakhter, Ilya, Tabrizi, Shervin, Grossman, Sharon R., Happi, Christian T., Sabeti, Pardis C.
Published in Philosophical transactions of the Royal Society of London. Series B. Biological sciences (19.03.2012)
Published in Philosophical transactions of the Royal Society of London. Series B. Biological sciences (19.03.2012)
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Journal Article
Systematic mapping of functional enhancer-promoter connections with CRISPR interference
Fulco, Charles P., Munschauer, Mathias, Anyoha, Rockwell, Munson, Glen, Grossman, Sharon R., Perez, Elizabeth M., Kane, Michael, Cleary, Brian, Lander, Eric S., Engreitz, Jesse M.
Published in Science (American Association for the Advancement of Science) (11.11.2016)
Published in Science (American Association for the Advancement of Science) (11.11.2016)
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Journal Article
Compatibility rules of human enhancer and promoter sequences
Bergman, Drew T., Jones, Thouis R., Liu, Vincent, Ray, Judhajeet, Jagoda, Evelyn, Siraj, Layla, Kang, Helen Y., Nasser, Joseph, Kane, Michael, Rios, Antonio, Nguyen, Tung H., Grossman, Sharon R., Fulco, Charles P., Lander, Eric S., Engreitz, Jesse M.
Published in Nature (London) (07.07.2022)
Published in Nature (London) (07.07.2022)
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Journal Article
Ancient and recent adaptive evolution of primate non-homologous end joining genes
Demogines, Ann, East, Alysia M, Lee, Ji-Hoon, Grossman, Sharon R, Sabeti, Pardis C, Paull, Tanya T, Sawyer, Sara L
Published in PLoS genetics (21.10.2010)
Published in PLoS genetics (21.10.2010)
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Journal Article
Identification and functional validation of the novel antimalarial resistance locus PF10_0355 in Plasmodium falciparum
Van Tyne, Daria, Park, Daniel J, Schaffner, Stephen F, Neafsey, Daniel E, Angelino, Elaine, Cortese, Joseph F, Barnes, Kayla G, Rosen, David M, Lukens, Amanda K, Daniels, Rachel F, Milner, Jr, Danny A, Johnson, Charles A, Shlyakhter, Ilya, Grossman, Sharon R, Becker, Justin S, Yamins, Daniel, Karlsson, Elinor K, Ndiaye, Daouda, Sarr, Ousmane, Mboup, Souleymane, Happi, Christian, Furlotte, Nicholas A, Eskin, Eleazar, Kang, Hyun Min, Hartl, Daniel L, Birren, Bruce W, Wiegand, Roger C, Lander, Eric S, Wirth, Dyann F, Volkman, Sarah K, Sabeti, Pardis C
Published in PLoS genetics (01.04.2011)
Published in PLoS genetics (01.04.2011)
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Journal Article
Integrating common and rare genetic variation in diverse human populations
Altshuler, David M, Gibbs, Richard A, Peltonen, Leena, Dermitzakis, Emmanouil, Schaffner, Stephen F, Yu, Fuli, Bonnen, Penelope E, de Bakker, Paul I W, Deloukas, Panos, Gabriel, Stacey B, Gwilliam, Rhian, Hunt, Sarah, Inouye, Michael, Jia, Xiaoming, Palotie, Aarno, Parkin, Melissa, Whittaker, Pamela, Chang, Kyle, Hawes, Alicia, Lewis, Lora R, Ren, Yanru, Wheeler, David, Muzny, Donna Marie, Barnes, Chris, Darvishi, Katayoon, Hurles, Matthew, Korn, Joshua M, Kristiansson, Kati, Lee, Charles, McCarrol, Steven A, Nemesh, James, Keinan, Alon, Montgomery, Stephen B, Pollack, Samuela, Price, Alkes L, Soranzo, Nicole, Gonzaga-Jauregui, Claudia, Anttila, Verneri, Brodeur, Wendy, Daly, Mark J, Leslie, Stephen, McVean, Gil, Moutsianas, Loukas, Nguyen, Huy, Zhang, Qingrun, Ghori, Mohammed J R, McGinnis, Ralph, McLaren, William, Takeuchi, Fumihiko, Grossman, Sharon R, Shlyakhter, Ilya, Hostetter, Elizabeth B, Sabeti, Pardis C, Adebamowo, Clement A, Foster, Morris W, Gordon, Deborah R, Licinio, Julio, Manca, Maria Cristina, Marshall, Patricia A, Matsuda, Ichiro, Ngare, Duncan, Wang, Vivian Ota, Reddy, Deepa, Rotimi, Charles N, Royal, Charmaine D, Sharp, Richard R, Zeng, Changqing, Brooks, Lisa D, McEwen, Jean E
Published in Nature (London) (02.09.2010)
Published in Nature (London) (02.09.2010)
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Journal Article
Detecting Novel Associations in Large Datasets
Reshef, David N., Reshef, Yakir A., Finucane, Hilary K., Grossman, Sharon R., McVean, Gilean, Turnbaugh, Peter J., Lander, Eric S., Mitzenmacher, Michael, Sabeti, Pardis C.
Published in Science (American Association for the Advancement of Science) (16.12.2011)
Published in Science (American Association for the Advancement of Science) (16.12.2011)
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Journal Article
Ancient and Recent Adaptive Evolution of Primate Non-Homologous End Joining Genes: e1001169
Demogines, Ann, East, Alysia M, Lee, Ji-Hoon, Grossman, Sharon R, Sabeti, Pardis C, Paull, Tanya T, Sawyer, Sara L
Published in PLoS genetics (01.10.2010)
Published in PLoS genetics (01.10.2010)
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Journal Article
Identification and Functional Validation of the Novel Antimalarial Resistance Locus PF10_0355 in Plasmodium falciparum: e1001383
Tyne, Daria Van, Park, Daniel J, Schaffner, Stephen F, Neafsey, Daniel E, Angelino, Elaine, Cortese, Joseph F, Barnes, Kayla G, Rosen, David M, Lukens, Amanda K, Daniels, Rachel F, Jr, Danny AMilner, Johnson, Charles A, Shlyakhter, Ilya, Grossman, Sharon R, Becker, Justin S, Yamins, Daniel, Karlsson, Elinor K, Ndiaye, Daouda, Sarr, Ousmane, Mboup, Souleymane, Happi, Christian, Furlotte, Nicholas A, Eskin, Eleazar, Kang, Hyun Min, Hartl, Daniel L, Birren, Bruce W, Wiegand, Roger C, Lander, Eric S, Wirth, Dyann F, Volkman, Sarah K, Sabeti, Pardis C
Published in PLoS genetics (01.04.2011)
Published in PLoS genetics (01.04.2011)
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Journal Article
Activity-by-Contact model of enhancer specificity from thousands of CRISPR perturbations
Fulco, Charles P, Nasser, Joseph, Jones, Thouis R, Munson, Glen, Bergman, Drew T, Subramanian, Vidya, Grossman, Sharon R, Rockwell Anyoha, Patwardhan, Tejal A, Nguyen, Tung H, Kane, Michael, Doughty, Benjamin, Perez, Elizabeth M, Durand, Neva C, Stamenova, Elena K, Erez Lieberman Aiden, Lander, Eric S, Engreitz, Jesse M
Published in bioRxiv (26.01.2019)
Published in bioRxiv (26.01.2019)
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