Global-level population genomics reveals differential effects of geography and phylogeny on horizontal gene transfer in soil bacteria
Greenlon, Alex, Chang, Peter L., Damtew, Zehara Mohammed, Muleta, Atsede, Carrasquilla-Garcia, Noelia, Kim, Donghyun, Nguyen, Hien P., Suryawanshi, Vasantika, Krieg, Christopher P., Yadav, Sudheer Kumar, Patel, Jai Singh, Mukherjee, Arpan, Udupa, Sripada, Benjelloun, Imane, Thami-Alami, Imane, Yasin, Mohammad, Patil, Bhuvaneshwara, Singh, Sarvjeet, Sarma, Birinchi Kumar, von Wettberg, Eric J. B., Kahraman, Abdullah, Bukun, Bekir, Assefa, Fassil, Tesfaye, Kassahun, Fikre, Asnake, Cook, Douglas R.
Published in Proceedings of the National Academy of Sciences - PNAS (23.07.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (23.07.2019)
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Journal Article
The Functional Significance of Bacterial Predators
Hungate, Bruce A, Marks, Jane C, Power, Mary E, Schwartz, Egbert, van Groenigen, Kees Jan, Blazewicz, Steven J, Chuckran, Peter, Dijkstra, Paul, Finley, Brianna K, Firestone, Mary K, Foley, Megan, Greenlon, Alex, Hayer, Michaela, Hofmockel, Kirsten S, Koch, Benjamin J, Mack, Michelle C, Mau, Rebecca L, Miller, Samantha N, Morrissey, Ember M, Propster, Jeffrey R, Purcell, Alicia M, Sieradzki, Ella, Starr, Evan P, Stone, Bram W G, Terrer, César, Pett-Ridge, Jennifer
Published in mBio (27.04.2021)
Published in mBio (27.04.2021)
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Journal Article
Quantitative Stable-Isotope Probing (qSIP) with Metagenomics Links Microbial Physiology and Activity to Soil Moisture in Mediterranean-Climate Grassland Ecosystems
Greenlon, Alex, Sieradzki, Ella, Zablocki, Olivier, Koch, Benjamin J, Foley, Megan M, Kimbrel, Jeffrey A, Hungate, Bruce A, Blazewicz, Steven J, Nuccio, Erin E, Sun, Christine L, Chew, Aaron, Mancilla, Cynthia-Jeanette, Sullivan, Matthew B, Firestone, Mary, Pett-Ridge, Jennifer, Banfield, Jillian F
Published in mSystems (20.12.2022)
Published in mSystems (20.12.2022)
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Journal Article
Viruses of Nitrogen-Fixing Mesorhizobium Bacteria in Globally Distributed Chickpea Root Nodules
Matsumoto, Brandon L., Sieradzki, Ella T., Greenlon, Alex, Perilla-Henao, Laura M., Ter Horst, Anneliek M., Geonczy, Sara E., Cook, Douglas R., Emerson, Joanne B.
Published in Phytobiomes journal (01.05.2024)
Published in Phytobiomes journal (01.05.2024)
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Journal Article
Measurement Error and Resolution in Quantitative Stable Isotope Probing: Implications for Experimental Design
Sieradzki, Ella T, Koch, Benjamin J, Greenlon, Alex, Sachdeva, Rohan, Malmstrom, Rex R, Mau, Rebecca L, Blazewicz, Steven J, Firestone, Mary K, Hofmockel, Kirsten S, Schwartz, Egbert, Hungate, Bruce A, Pett-Ridge, Jennifer
Published in mSystems (21.07.2020)
Published in mSystems (21.07.2020)
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Journal Article
Life and death in the soil microbiome: how ecological processes influence biogeochemistry
Sokol, Noah W, Slessarev, Eric, Marschmann, Gianna L, Nicolas, Alexa, Blazewicz, Steven J, Brodie, Eoin L, Firestone, Mary K, Foley, Megan M, Hestrin, Rachel, Hungate, Bruce A, Koch, Benjamin J, Stone, Bram W, Sullivan, Matthew B, Zablocki, Olivier, Pett-Ridge, Jennifer
Published in Nature reviews. Microbiology (01.07.2022)
Published in Nature reviews. Microbiology (01.07.2022)
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Journal Article
Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation
von Wettberg, Eric J B, Chang, Peter L, Başdemir, Fatma, Carrasquila-Garcia, Noelia, Korbu, Lijalem Balcha, Moenga, Susan M, Bedada, Gashaw, Greenlon, Alex, Moriuchi, Ken S, Singh, Vasantika, Cordeiro, Matilde A, Noujdina, Nina V, Dinegde, Kassaye Negash, Shah Sani, Syed Gul Abbas, Getahun, Tsegaye, Vance, Lisa, Bergmann, Emily, Lindsay, Donna, Mamo, Bullo Erena, Warschefsky, Emily J, Dacosta-Calheiros, Emmanuel, Marques, Edward, Yilmaz, Mustafa Abdullah, Cakmak, Ahmet, Rose, Janna, Migneault, Andrew, Krieg, Christopher P, Saylak, Sevgi, Temel, Hamdi, Friesen, Maren L, Siler, Eleanor, Akhmetov, Zhaslan, Ozcelik, Huseyin, Kholova, Jana, Can, Canan, Gaur, Pooran, Yildirim, Mehmet, Sharma, Hari, Vadez, Vincent, Tesfaye, Kassahun, Woldemedhin, Asnake Fikre, Tar'an, Bunyamin, Aydogan, Abdulkadir, Bukun, Bekir, Penmetsa, R Varma, Berger, Jens, Kahraman, Abdullah, Nuzhdin, Sergey V, Cook, Douglas R
Published in Nature communications (13.02.2018)
Published in Nature communications (13.02.2018)
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Journal Article
Active populations and growth of soil microorganisms are framed by mean annual precipitation in three California annual grasslands
Foley, Megan M., Blazewicz, Steven J., McFarlane, Karis J., Greenlon, Alex, Hayer, Michaela, Kimbrel, Jeffrey A., Koch, Benjamin J., Monsaint-Queeney, Victoria L., Morrison, Keith, Morrissey, Ember, Hungate, Bruce A., Pett-Ridge, Jennifer
Published in Soil biology & biochemistry (01.02.2023)
Published in Soil biology & biochemistry (01.02.2023)
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Journal Article
The path from root input to mineral-associated soil carbon is dictated by habitat-specific microbial traits and soil moisture
Sokol, Noah W., Foley, Megan M., Blazewicz, Steven J., Bhattacharyya, Amrita, DiDonato, Nicole, Estera-Molina, Katerina, Firestone, Mary, Greenlon, Alex, Hungate, Bruce A., Kimbrel, Jeffrey, Liquet, Jose, Lafler, Marissa, Marple, Maxwell, Nico, Peter S., Paša-Tolić, Ljiljana, Slessarev, Eric, Pett-Ridge, Jennifer
Published in Soil biology & biochemistry (01.06.2024)
Published in Soil biology & biochemistry (01.06.2024)
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Journal Article
Genomic diversity and distribution of Mesorhizobium nodulating chickpea (Cicer arietinum L.) from low pH soils of Ethiopia
Muleta, Atsede, Tesfaye, Kassahun, Assefa, Fassil, Greenlon, Alex, Riely, Brendan K., Carrasquilla-Garcia, Noelia, Gai, Yunpeng, Haileslassie, Teklehaimanot, Cook, Douglas R.
Published in Systematic and applied microbiology (01.01.2022)
Published in Systematic and applied microbiology (01.01.2022)
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Journal Article
Modified tomato plants with extended shelf life
BAYER Travis, GONZALES Shaneece, SAMSON Jennifer, COLICCHIO Jack, GREENLON Alex, DAVIDSON Eric
Year of Publication 01.02.2024
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Year of Publication 01.02.2024
Patent
MODIFIED TOMATO PLANTS WITH EXTENDED SHELF LIFE
Greenlon, Alex, Samson, Jennifer, Bayer, Travis, Davidson, Eric, Gonzales, Shaneece Flores, Colicchio, Jack
Year of Publication 23.02.2023
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Year of Publication 23.02.2023
Patent
MODIFIED TOMATO PLANTS WITH EXTENDED SHELF LIFE
DAVIDSON, ERIC, BAYER, TRAVIS, SAMSON, JENNIFER, COLICCHIO, JACK, GREENLON, ALEX, GONZALES, SHANEECE
Year of Publication 05.01.2023
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Year of Publication 05.01.2023
Patent
MODIFIED TOMATO PLANTS WITH EXTENDED SHELF LIFE
DAVIDSON, Eric, SAMSON, Jennifer, COLICCHIO, Jack, GONZALES, Shaneece, GREENLON, Alex, BAYER, Travis
Year of Publication 05.01.2023
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Year of Publication 05.01.2023
Patent
MODIFIED TOMATO PLANTS WITH EXTENDED SHELF LIFE
BAYER Travis, GONZALES Shaneece, SAMSON Jennifer, COLICCHIO Jack, GREENLON Alex, DAVIDSON Eric
Year of Publication 09.04.2024
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Year of Publication 09.04.2024
Patent
Active communities and growth of soil microorganisms are framed by mean annual precipitation in three California annual grasslands
Foley, Megan M, Blazewicz, Steven J, Mcfarlane, Karis J, Greenlon, Alex, Hayer, Michaela, Kimbrel, Jeffrey A, Koch, Benjamin J, Morrison, Keith, Morrissey, Ember M, Hungate, Bruce A, Pett-Ridge, Jennifer
Published in bioRxiv (07.12.2021)
Published in bioRxiv (07.12.2021)
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Paper
Measurement error and resolution in quantitative stable isotope probing: implications for experimental design
Sieradzki, Ella T, Koch, Benjamin J, Greenlon, Alex, Sachdeva, Rohan, Malmstrom, Rex R, Mau, Rebecca L, Blazewicz, Steven J, Firestone, Mary K, Hofmockel, Kirsten, Schwartz, Egbert, Hungate, Bruce A, Pett-Ridge, Jennifer
Published in bioRxiv (26.02.2020)
Published in bioRxiv (26.02.2020)
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Paper
The Functional Significance of Bacterial Predators
Hungate, Bruce A, Marks, Jane C, Power, Mary E, Schwartz, Egbert, Van Groenigen, Kees Jan, Blazewicz, Steven J, Chuckran, Peter, Dijkstra, Paul, Finley, Brianna K, Firestone, Mary K, Foley, Megan, Greenlon, Alex, Hayer, Michaela, Hofmockel, Kirsten S, Koch, Benjamin J, Mack, Michelle C, Mau, Rebecca L, Miller, Samantha N, Morrissey, Ember M, Propster, Jeff R, Purcell, Alicia M, Sieradzki, Ella, Starr, Evan P, Stone, Bram W G, Terrer, César, Pett-Ridge, Jennifer
Published in bioRxiv (25.02.2021)
Published in bioRxiv (25.02.2021)
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Paper