Impact of Genetic Polymorphisms on Human Immune Cell Gene Expression
Schmiedel, Benjamin J., Singh, Divya, Madrigal, Ariel, Valdovino-Gonzalez, Alan G., White, Brandie M., Zapardiel-Gonzalo, Jose, Ha, Brendan, Altay, Gokmen, Greenbaum, Jason A., McVicker, Graham, Seumois, Grégory, Rao, Anjana, Kronenberg, Mitchell, Peters, Bjoern, Vijayanand, Pandurangan
Published in Cell (29.11.2018)
Published in Cell (29.11.2018)
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Journal Article
Properties of MHC class I presented peptides that enhance immunogenicity
Calis, Jorg J A, Maybeno, Matt, Greenbaum, Jason A, Weiskopf, Daniela, De Silva, Aruna D, Sette, Alessandro, Keşmir, Can, Peters, Bjoern
Published in PLoS computational biology (01.10.2013)
Published in PLoS computational biology (01.10.2013)
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Journal Article
Efficacy and safety of eculizumab in atypical hemolytic uremic syndrome from 2-year extensions of phase 2 studies
Licht, Christoph, Greenbaum, Larry A., Muus, Petra, Babu, Sunil, Bedrosian, Camille L., Cohen, David J., Delmas, Yahsou, Douglas, Kenneth, Furman, Richard R., Gaber, Osama A., Goodship, Timothy, Herthelius, Maria, Hourmant, Maryvonne, Legendre, Christophe M., Remuzzi, Giuseppe, Sheerin, Neil, Trivelli, Antonella, Loirat, Chantal
Published in Kidney international (01.05.2015)
Published in Kidney international (01.05.2015)
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Journal Article
An automated benchmarking platform for MHC class II binding prediction methods
Andreatta, Massimo, Trolle, Thomas, Yan, Zhen, Greenbaum, Jason A, Peters, Bjoern, Nielsen, Morten
Published in Bioinformatics (01.05.2018)
Published in Bioinformatics (01.05.2018)
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Journal Article
Predictors of Rapid Progression of Glomerular and Nonglomerular Kidney Disease in Children and Adolescents: The Chronic Kidney Disease in Children (CKiD) Cohort
Warady, Bradley A., MD, Abraham, Alison G., PhD, Schwartz, George J., MD, Wong, Craig S., MD, Muñoz, Alvaro, PhD, Betoko, Aisha, PhD, Mitsnefes, Mark, MD, MS, Kaskel, Frederick, MD, PhD, Greenbaum, Larry A., MD, PhD, Mak, Robert H., MD, PhD, Flynn, Joseph, MD, Moxey-Mims, Marva M., MD, Furth, Susan, MD, PhD
Published in American journal of kidney diseases (01.06.2015)
Published in American journal of kidney diseases (01.06.2015)
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Journal Article
Unique phenotypes and clonal expansions of human CD4 effector memory T cells re-expressing CD45RA
Tian, Yuan, Babor, Mariana, Lane, Jerome, Schulten, Veronique, Patil, Veena S, Seumois, Grégory, Rosales, Sandy L, Fu, Zheng, Picarda, Gaelle, Burel, Julie, Zapardiel-Gonzalo, Jose, Tennekoon, Rashika N, De Silva, Aruna D, Premawansa, Sunil, Premawansa, Gayani, Wijewickrama, Ananda, Greenbaum, Jason A, Vijayanand, Pandurangan, Weiskopf, Daniela, Sette, Alessandro, Peters, Bjoern
Published in Nature communications (13.11.2017)
Published in Nature communications (13.11.2017)
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Journal Article
Towards the prediction of non-peptidic epitopes
Zierep, Paul F, Vita, Randi, Blazeska, Nina, Moumbock, Aurélien F A, Greenbaum, Jason A, Peters, Bjoern, Günther, Stefan
Published in PLoS computational biology (01.02.2022)
Published in PLoS computational biology (01.02.2022)
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Journal Article
Retrieving scattering clouds and disequilibrium chemistry in the atmosphere of HR 8799e
Mollière, P., Stolker, T., Lacour, S., Otten, G. P. P. L., Shangguan, J., Charnay, B., Molyarova, T., Nowak, M., Henning, Th, Marleau, G.-D., Semenov, D. A., van Dishoeck, E., Eisenhauer, F., Garcia, P., Garcia Lopez, R., Girard, J. H., Greenbaum, A. Z., Hinkley, S., Kervella, P., Kreidberg, L., Maire, A.-L., Nasedkin, E., Pueyo, L., Snellen, I. A. G., Vigan, A., Wang, J., de Zeeuw, P. T., Zurlo, A.
Published in Astronomy and astrophysics (Berlin) (01.08.2020)
Published in Astronomy and astrophysics (Berlin) (01.08.2020)
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Comprehensive analysis of dengue virus-specific responses supports an HLA-linked protective role for CD8⁺ T cells
Weiskopf, Daniela, Angelo, Michael A, de Azeredo, Elzinandes L, Sidney, John, Greenbaum, Jason A, Fernando, Anira N, Broadwater, Anne, Kolla, Ravi V, De Silva, Aruna D, de Silva, Aravinda M, Mattia, Kimberly A, Doranz, Benjamin J, Grey, Howard M, Shresta, Sujan, Peters, Bjoern, Sette, Alessandro
Published in Proceedings of the National Academy of Sciences - PNAS (28.05.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (28.05.2013)
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Journal Article
Automated benchmarking of peptide-MHC class I binding predictions
Trolle, Thomas, Metushi, Imir G, Greenbaum, Jason A, Kim, Yohan, Sidney, John, Lund, Ole, Sette, Alessandro, Peters, Bjoern, Nielsen, Morten
Published in Bioinformatics (01.07.2015)
Published in Bioinformatics (01.07.2015)
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Journal Article
TCRMatch: Predicting T-Cell Receptor Specificity Based on Sequence Similarity to Previously Characterized Receptors
Chronister, William D, Crinklaw, Austin, Mahajan, Swapnil, Vita, Randi, Koşaloğlu-Yalçın, Zeynep, Yan, Zhen, Greenbaum, Jason A, Jessen, Leon E, Nielsen, Morten, Christley, Scott, Cowell, Lindsay G, Sette, Alessandro, Peters, Bjoern
Published in Frontiers in immunology (11.03.2021)
Published in Frontiers in immunology (11.03.2021)
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Journal Article
Pre-Existing Immunity against Swine-Origin H1N1 Influenza Viruses in the General Human Population
Greenbaum, Jason A., Kotturi, Maya F., Kim, Yohan, Oseroff, Carla, Vaughan, Kerrie, Salimi, Nima, Vita, Randi, Ponomarenko, Julia, Scheuermann, Richard H., Sette, Alessandro, Peters, Bjoern
Published in Proceedings of the National Academy of Sciences - PNAS (01.12.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (01.12.2009)
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Journal Article
PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins
Marrama, Daniel, Chronister, William D, Westernberg, Luise, Vita, Randi, Koşaloğlu-Yalçın, Zeynep, Sette, Alessandro, Nielsen, Morten, Greenbaum, Jason A, Peters, Bjoern
Published in BMC bioinformatics (18.12.2023)
Published in BMC bioinformatics (18.12.2023)
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Journal Article
Linked CD4+/CD8+ T cell neoantigen vaccination overcomes immune checkpoint blockade resistance and enables tumor regression
Dolina, Joseph S., Lee, Joey, Brightman, Spencer E., McArdle, Sara, Hall, Samantha M., Thota, Rukman R., Zavala, Karla S., Lanka, Manasa, Ramamoorthy Premlal, Ashmitaa Logandha, Greenbaum, Jason A., Cohen, Ezra E. W., Peters, Bjoern, Schoenberger, Stephen P.
Published in The Journal of clinical investigation (01.09.2023)
Published in The Journal of clinical investigation (01.09.2023)
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Journal Article
Memory T cells in latent Mycobacterium tuberculosis infection are directed against three antigenic islands and largely contained in a CXCR3+CCR6+ Th1 subset
Lindestam Arlehamn, Cecilia S, Gerasimova, Anna, Mele, Federico, Henderson, Ryan, Swann, Justine, Greenbaum, Jason A, Kim, Yohan, Sidney, John, James, Eddie A, Taplitz, Randy, McKinney, Denise M, Kwok, William W, Grey, Howard, Sallusto, Federica, Peters, Bjoern, Sette, Alessandro
Published in PLoS pathogens (01.01.2013)
Published in PLoS pathogens (01.01.2013)
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Late-rising CD4 T cells resolve mouse cytomegalovirus persistent replication in the salivary gland
Brunel, Simon, Picarda, Gaelle, Gupta, Ankan, Ghosh, Raima, McDonald, Bryan, El Morabiti, Rachid, Jiang, Wenjin, Greenbaum, Jason A, Adler, Barbara, Seumois, Gregory, Croft, Michael, Vijayanand, Pandurangan, Benedict, Chris A
Published in PLoS pathogens (18.01.2024)
Published in PLoS pathogens (18.01.2024)
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Journal Article
Outcomes in patients with atypical hemolytic uremic syndrome treated with eculizumab in a long-term observational study
Menne, Jan, Delmas, Yahsou, Fakhouri, Fadi, Licht, Christoph, Lommelé, Åsa, Minetti, Enrico E, Provôt, François, Rondeau, Eric, Sheerin, Neil S, Wang, Jimmy, Weekers, Laurent E, Greenbaum, Larry A
Published in BMC nephrology (10.04.2019)
Published in BMC nephrology (10.04.2019)
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Selective inhibition of CD4⁺ T-cell cytokine production and autoimmunity by BET protein and c-Myc inhibitors
Bandukwala, Hozefa S, Gagnon, John, Togher, Susan, Greenbaum, Jason A, Lamperti, Edward D, Parr, Nigel J, Molesworth, Amy M. H, Smithers, Nicholas, Lee, Kevin, Witherington, Jason, Tough, David F, Prinjha, Rab K, Peters, Bjoern, Rao, Anjana
Published in Proceedings of the National Academy of Sciences - PNAS (04.09.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (04.09.2012)
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