Detecting adaptive introgression in human evolution using convolutional neural networks
Gower, Graham, Picazo, Pablo Iáñez, Fumagalli, Matteo, Racimo, Fernando
Published in eLife (25.05.2021)
Published in eLife (25.05.2021)
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Journal Article
A community-maintained standard library of population genetic models
Adrion, Jeffrey R, Cole, Christopher B, Dukler, Noah, Galloway, Jared G, Gladstein, Ariella L, Gower, Graham, Kyriazis, Christopher C, Ragsdale, Aaron P, Tsambos, Georgia, Baumdicker, Franz, Carlson, Jedidiah, Cartwright, Reed A, Durvasula, Arun, Gronau, Ilan, Kim, Bernard Y, McKenzie, Patrick, Messer, Philipp W, Noskova, Ekaterina, Ortega-Del Vecchyo, Diego, Racimo, Fernando, Struck, Travis J, Gravel, Simon, Gutenkunst, Ryan N, Lohmueller, Kirk E, Ralph, Peter L, Schrider, Daniel R, Siepel, Adam, Kelleher, Jerome, Kern, Andrew D
Published in eLife (23.06.2020)
Published in eLife (23.06.2020)
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Journal Article
Efficient ancestry and mutation simulation with msprime 1.0
Baumdicker, Franz, Bisschop, Gertjan, Goldstein, Daniel, Gower, Graham, Ragsdale, Aaron P, Tsambos, Georgia, Zhu, Sha, Eldon, Bjarki, Ellerman, E Castedo, Galloway, Jared G, Gladstein, Ariella L, Gorjanc, Gregor, Guo, Bing, Jeffery, Ben, Kretzschumar, Warren W, Lohse, Konrad, Matschiner, Michael, Nelson, Dominic, Pope, Nathaniel S, Quinto-Cortés, Consuelo D, Rodrigues, Murillo F, Saunack, Kumar, Sellinger, Thibaut, Thornton, Kevin, van Kemenade, Hugo, Wohns, Anthony W, Wong, Yan, Gravel, Simon, Kern, Andrew D, Koskela, Jere, Ralph, Peter L, Kelleher, Jerome
Published in Genetics (Austin) (03.03.2022)
Published in Genetics (Austin) (03.03.2022)
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Journal Article
Demes: a standard format for demographic models
Gower, Graham, Ragsdale, Aaron P, Bisschop, Gertjan, Gutenkunst, Ryan N, Hartfield, Matthew, Noskova, Ekaterina, Schiffels, Stephan, Struck, Travis J, Kelleher, Jerome, Thornton, Kevin R
Published in Genetics (Austin) (01.11.2022)
Published in Genetics (Austin) (01.11.2022)
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Journal Article
Widespread male sex bias in mammal fossil and museum collections
Gower, Graham, Fenderson, Lindsey E., Salis, Alexander T., Helgen, Kristofer M., van Loenen, Ayla L., Heiniger, Holly, Hofman-Kamińska, Emilia, Kowalczyk, Rafał, Mitchell, Kieren J., Llamas, Bastien, Cooper, Alan
Published in Proceedings of the National Academy of Sciences - PNAS (17.09.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (17.09.2019)
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Journal Article
Dire wolves were the last of an ancient New World canid lineage
Perri, Angela R, Mitchell, Kieren J, Mouton, Alice, Álvarez-Carretero, Sandra, Hulme-Beaman, Ardern, Haile, James, Jamieson, Alexandra, Meachen, Julie, Lin, Audrey T, Schubert, Blaine W, Ameen, Carly, Antipina, Ekaterina E, Bover, Pere, Brace, Selina, Carmagnini, Alberto, Carøe, Christian, Samaniego Castruita, Jose A, Chatters, James C, Dobney, Keith, Dos Reis, Mario, Evin, Allowen, Gaubert, Philippe, Gopalakrishnan, Shyam, Gower, Graham, Heiniger, Holly, Helgen, Kristofer M, Kapp, Josh, Kosintsev, Pavel A, Linderholm, Anna, Ozga, Andrew T, Presslee, Samantha, Salis, Alexander T, Saremi, Nedda F, Shew, Colin, Skerry, Katherine, Taranenko, Dmitry E, Thompson, Mary, Sablin, Mikhail V, Kuzmin, Yaroslav V, Collins, Matthew J, Sinding, Mikkel-Holger S, Gilbert, M Thomas P, Stone, Anne C, Shapiro, Beth, Van Valkenburgh, Blaire, Wayne, Robert K, Larson, Greger, Cooper, Alan, Frantz, Laurent A F
Published in Nature (London) (04.03.2021)
Published in Nature (London) (04.03.2021)
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Web Resource
Early cave art and ancient DNA record the origin of European bison
Soubrier, Julien, Gower, Graham, Chen, Kefei, Richards, Stephen M, Llamas, Bastien, Mitchell, Kieren J, Ho, Simon Y W, Kosintsev, Pavel, Lee, Michael S Y, Baryshnikov, Gennady, Bollongino, Ruth, Bover, Pere, Burger, Joachim, Chivall, David, Crégut-Bonnoure, Evelyne, Decker, Jared E, Doronichev, Vladimir B, Douka, Katerina, Fordham, Damien A, Fontana, Federica, Fritz, Carole, Glimmerveen, Jan, Golovanova, Liubov V, Groves, Colin, Guerreschi, Antonio, Haak, Wolfgang, Higham, Tom, Hofman-Kamińska, Emilia, Immel, Alexander, Julien, Marie-Anne, Krause, Johannes, Krotova, Oleksandra, Langbein, Frauke, Larson, Greger, Rohrlach, Adam, Scheu, Amelie, Schnabel, Robert D, Taylor, Jeremy F, Tokarska, Małgorzata, Tosello, Gilles, van der Plicht, Johannes, van Loenen, Ayla, Vigne, Jean-Denis, Wooley, Oliver, Orlando, Ludovic, Kowalczyk, Rafał, Shapiro, Beth, Cooper, Alan
Published in Nature communications (18.10.2016)
Published in Nature communications (18.10.2016)
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Journal Article
Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations
Lauterbur, M Elise, Cavassim, Maria Izabel A, Gladstein, Ariella L, Gower, Graham, Pope, Nathaniel S, Tsambos, Georgia, Adrion, Jeffrey, Belsare, Saurabh, Biddanda, Arjun, Caudill, Victoria, Cury, Jean, Echevarria, Ignacio, Haller, Benjamin C, Hasan, Ahmed R, Huang, Xin, Iasi, Leonardo Nicola Martin, Noskova, Ekaterina, Obsteter, Jana, Pavinato, Vitor Antonio Correa, Pearson, Alice, Peede, David, Perez, Manolo F, Rodrigues, Murillo F, Smith, Chris C R, Spence, Jeffrey P, Teterina, Anastasia, Tittes, Silas, Unneberg, Per, Vazquez, Juan Manuel, Waples, Ryan K, Wohns, Anthony Wilder, Wong, Yan, Baumdicker, Franz, Cartwright, Reed A, Gorjanc, Gregor, Gutenkunst, Ryan N, Kelleher, Jerome, Kern, Andrew D, Ragsdale, Aaron P, Ralph, Peter L, Schrider, Daniel R, Gronau, Ilan
Published in eLife (21.06.2023)
Published in eLife (21.06.2023)
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Journal Article
Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations
Lauterbur, M Elise, Cavassim, Maria Izabel A, Gladstein, Ariella L, Gower, Graham, Pope, Nathaniel S, Tsambos, Georgia, Adrion, Jeffrey, Belsare, Saurabh, Biddanda, Arjun, Caudill, Victoria, Cury, Jean, Echevarria, Ignacio, Haller, Benjamin C, Hasan, Ahmed R, Huang, Xin, Iasi, Leonardo Nicola Martin, Noskova, Ekaterina, Obsteter, Jana, Pavinato, Vitor Antonio Correa, Pearson, Alice, Peede, David, Perez, Manolo F, Rodrigues, Murillo F, Smith, Chris CR, Spence, Jeffrey P, Teterina, Anastasia, Tittes, Silas, Unneberg, Per, Vazquez, Juan Manuel, Waples, Ryan K, Wohns, Anthony Wilder, Wong, Yan, Baumdicker, Franz, Cartwright, Reed A, Gorjanc, Gregor, Gutenkunst, Ryan N, Kelleher, Jerome, Kern, Andrew D, Ragsdale, Aaron P, Ralph, Peter L, Schrider, Daniel R, Gronau, Ilan
Published in eLife (21.06.2023)
Published in eLife (21.06.2023)
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Journal Article
Admixture has obscured signals of historical hard sweeps in humans
Souilmi, Yassine, Tobler, Raymond, Johar, Angad, Williams, Matthew, Grey, Shane T, Schmidt, Joshua, Teixeira, João C, Rohrlach, Adam, Tuke, Jonathan, Johnson, Olivia, Gower, Graham, Turney, Chris, Cox, Murray, Cooper, Alan, Huber, Christian D
Published in Nature ecology & evolution (01.12.2022)
Published in Nature ecology & evolution (01.12.2022)
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Journal Article
Genome of the Tasmanian tiger provides insights into the evolution and demography of an extinct marsupial carnivore
Feigin, Charles Y, Newton, Axel H, Doronina, Liliya, Schmitz, Jürgen, Hipsley, Christy A, Mitchell, Kieren J, Gower, Graham, Llamas, Bastien, Soubrier, Julien, Heider, Thomas N, Menzies, Brandon R, Cooper, Alan, O'Neill, Rachel J, Pask, Andrew J
Published in Nature ecology & evolution (01.01.2018)
Published in Nature ecology & evolution (01.01.2018)
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Journal Article
Population genomics of the island thrush elucidates one of earth's great archipelagic radiations
Reeve, Andrew Hart, Gower, Graham, Pujolar, José Martín, Smith, Brian Tilston, Petersen, Bent, Olsson, Urban, Haryoko, Tri, Koane, Bonny, Maiah, Gibson, Blom, Mozes P K, Ericson, Per G P, Irestedt, Martin, Racimo, Fernando, Jønsson, Knud Andreas
Published in Evolution letters (01.02.2023)
Published in Evolution letters (01.02.2023)
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Journal Article
A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives [version 2; peer review: 2 approved]
Westbury, Michael V, Barnett, Ross, Sandoval-Velasco, Marcela, Gowe, Graham, Vieira, Filipe Garrett, de Manuel, Marc, Hansen, Anders J, Yamaguch, Nobuyuki, Werdelin, Lars, Marques-Bonet, Tomas, Gilbert, M Thomas P, Lorenzen, Eline D
Published in Open research Europe (21.06.2021)
Published in Open research Europe (21.06.2021)
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Journal Article
A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives
Westbury, Michael V, Barnett, Ross, Sandoval-Velasco, Marcela, Gower, Graham, Vieira, Filipe Garrett, de Manuel, Marc, Hansen, Anders J, Yamaguchi, Nobuyuki, Werdelin, Lars, Marques-Bonet, Tomas, Gilbert, M Thomas P, Lorenzen, Eline D
Published in Open research Europe (2021)
Published in Open research Europe (2021)
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Journal Article
Population genomics of the island thrush elucidates one of earth's great archipelagic radiations
Andrew Hart Reeve, Gower, Graham, Pujolar, José Martĺn, Brian Tilston Smith, Petersen, Bent, Olsson, Urban, Haryoko, Tri, Koane, Bonny, Gibson Maiah, Blom, Mozes P K, Ericson, Per G P, Irestedt, Martin, Racimo, Fernando, Jønsson, Knud Andreas
Published in bioRxiv (22.04.2022)
Published in bioRxiv (22.04.2022)
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Paper
Ancient genomes reveal hybridisation between extinct short-faced bears and the extant spectacled bear (Tremarctos ornatus)
Salis, Alexander T, Gower, Graham, Schubert, Blaine W, Soibelzon, Leopoldo H, Heiniger, Holly, Prieto, Alfredo, Prevosti, Francisco J, Meachen, Julie, Cooper, Alan, Mitchell, Kieren J
Published in bioRxiv (10.03.2021)
Published in bioRxiv (10.03.2021)
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Paper
Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations
Lauterbur, M Elise, Mariz Izabel A Cavassim, Gladstein, Ariella L, Gower, Graham, Pope, Nathaniel S, Tsambos, Georgia, Adrion, Jeffrey, Belsare, Saurabh, Biddanda, Arjun, Caudill, Victoria, Cury, Jean, Echevarria, Ignacio, Haller, Benjamin C, Hasan, Ahmed R, Huang, Xin, Leonardo Nicola Martin Iasi, Noskova, Ekaterina, Obšteter, Jana, Vitor Antonio Corrêa Pavinato, Pearson, Alice, Peede, David, Perez, Manolo F, Rodrigues, Murillo F, Smith, Chris C R, Spence, Jeffrey P, Teterina, Anastasia, Tittes, Silas, Unneberg, Per, Vazquez, Juan Manuel, Waples, Ryan K, Anthony Wilder Wohns, Wong, Yan, Baumdicker, Franz, Cartwright, Reed A, Gorjanc, Gregor, Gutenkunst, Ryan N, Kelleher, Jerome, Kern, Andrew D, Ragsdale, Aaron P, Ralph, Peter L, Schrider, Daniel R, Gronau, Ilan
Published in bioRxiv (31.10.2022)
Published in bioRxiv (31.10.2022)
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