DNA methylation and gene expression regulation associated with vascularization in Sorghum bicolor
Turco, Gina M., Kajala, Kaisa, Kunde‐Ramamoorthy, Govindarajan, Ngan, Chew‐Yee, Olson, Andrew, Deshphande, Shweta, Tolkunov, Denis, Waring, Barbara, Stelpflug, Scott, Klein, Patricia, Schmutz, Jeremy, Kaeppler, Shawn, Ware, Doreen, Wei, Chia‐Lin, Etchells, J. Peter, Brady, Siobhan M.
Published in The New phytologist (01.05.2017)
Published in The New phytologist (01.05.2017)
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Extensive Genetic Diversity is Present within North American Switchgrass Germplasm
Evans, Joseph, Sanciangco, Millicent D., Lau, Kin H., Crisovan, Emily, Barry, Kerrie, Daum, Chris, Hundley, Hope, Jenkins, Jerry, Kennedy, Megan, Kunde‐Ramamoorthy, Govindarajan, Vaillancourt, Brieanne, Acharya, Ananta, Schmutz, Jeremy, Saha, Malay, Kaeppler, Shawn M., Brummer, E. Charles, Casler, Michael D., Buell, C. Robin
Published in The plant genome (01.03.2018)
Published in The plant genome (01.03.2018)
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Mouse Phenome Database: an integrative database and analysis suite for curated empirical phenotype data from laboratory mice
Bogue, Molly A, Grubb, Stephen C, Walton, David O, Philip, Vivek M, Kolishovski, Georgi, Stearns, Tim, Dunn, Matthew H, Skelly, Daniel A, Kadakkuzha, Beena, TeHennepe, Gregg, Kunde-Ramamoorthy, Govindarajan, Chesler, Elissa J
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing
Kunde-Ramamoorthy, Govindarajan, Coarfa, Cristian, Laritsky, Eleonora, Kessler, Noah J, Harris, R Alan, Xu, Mingchu, Chen, Rui, Shen, Lanlan, Milosavljevic, Aleksandar, Waterland, Robert A
Published in Nucleic acids research (01.04.2014)
Published in Nucleic acids research (01.04.2014)
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Diversity and population structure of northern switchgrass as revealed through exome capture sequencing
Evans, Joseph, Crisovan, Emily, Barry, Kerrie, Daum, Chris, Jenkins, Jerry, Kunde‐Ramamoorthy, Govindarajan, Nandety, Aruna, Ngan, Chew Yee, Vaillancourt, Brieanne, Wei, Chia‐Lin, Schmutz, Jeremy, Kaeppler, Shawn M., Casler, Michael D., Buell, Carol Robin
Published in The Plant journal : for cell and molecular biology (01.11.2015)
Published in The Plant journal : for cell and molecular biology (01.11.2015)
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T3SEdb: data warehousing of virulence effectors secreted by the bacterial Type III Secretion System
Tay, Daniel Ming Ming, Govindarajan, Kunde Ramamoorthy, Khan, Asif M, Ong, Terenze Yao Rui, Samad, Hanif M, Soh, Wei Wei, Tong, Minyan, Zhang, Fan, Tan, Tin Wee
Published in BMC bioinformatics (15.10.2010)
Published in BMC bioinformatics (15.10.2010)
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Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation
Guo, Jian, Wilken, Susanne, Jimenez, Valeria, Choi, Chang Jae, Ansong, Charles, Dannebaum, Richard, Sudek, Lisa, Milner, David S, Bachy, Charles, Reistetter, Emily Nahas, Elrod, Virginia A, Klimov, Denis, Purvine, Samuel O, Wei, Chia-Lin, Kunde-Ramamoorthy, Govindarajan, Richards, Thomas A, Goodenough, Ursula, Smith, Richard D, Callister, Stephen J, Worden, Alexandra Z
Published in Nature microbiology (01.07.2018)
Published in Nature microbiology (01.07.2018)
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Major epigenetic development distinguishing neuronal and non-neuronal cells occurs postnatally in the murine hypothalamus
Li, Ge, Zhang, Wenjuan, Baker, Maria S., Laritsky, Eleonora, Mattan-Hung, Natalia, Yu, Dahai, Kunde-Ramamoorthy, Govindarajan, Simerly, Richard B., Chen, Rui, Shen, Lanlan, Waterland, Robert A.
Published in Human molecular genetics (15.03.2014)
Published in Human molecular genetics (15.03.2014)
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Developmentally Programmed 3′ CpG Island Methylation Confers Tissue- and Cell-Type-Specific Transcriptional Activation
Yu, Da-Hai, Ware, Carol, Waterland, Robert A., Zhang, Jiexin, Chen, Miao-Hsueh, Gadkari, Manasi, Kunde-Ramamoorthy, Govindarajan, Nosavanh, Lagina M., Shen, Lanlan
Published in Molecular and Cellular Biology (01.05.2013)
Published in Molecular and Cellular Biology (01.05.2013)
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Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing
Zuo, Chunman, Blow, Matthew, Sreedasyam, Avinash, Kuo, Rita C, Ramamoorthy, Govindarajan Kunde, Torres-Jerez, Ivone, Li, Guifen, Wang, Mei, Dilworth, David, Barry, Kerrie, Udvardi, Michael, Schmutz, Jeremy, Tang, Yuhong, Xu, Ying
Published in Biotechnology for biofuels (20.06.2018)
Published in Biotechnology for biofuels (20.06.2018)
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Genomewide expression analysis in zebrafish mind bomb alleles with pancreas defects of different severity identifies putative Notch responsive genes
Hegde, Ashok, Qiu, Nick Chuanxin, Qiu, Xuehui, Ho, Steven Hao-Kee, Tay, Kenny Qi-Ye, George, Joshy, Ng, Felicia Soo Lee, Govindarajan, Kunde Ramamoorthy, Gong, Zhiyuan, Mathavan, Sinnakaruppan, Jiang, Yun-Jin
Published in PloS one (23.01.2008)
Published in PloS one (23.01.2008)
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MVAR: A Mouse Variation Registry
El Kassaby, Bahá, Castellanos, Francisco, Gerring, Matthew, Kunde-Ramamoorthy, Govindarajan, Bult, Carol J.
Published in Journal of molecular biology (01.09.2024)
Published in Journal of molecular biology (01.09.2024)
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Widespread adenine N6-methylation of active genes in fungi
Mondo, Stephen J, Dannebaum, Richard O, Kuo, Rita C, Louie, Katherine B, Bewick, Adam J, LaButti, Kurt, Haridas, Sajeet, Kuo, Alan, Salamov, Asaf, Ahrendt, Steven R, Lau, Rebecca, Bowen, Benjamin P, Lipzen, Anna, Sullivan, William, Andreopoulos, Bill B, Clum, Alicia, Lindquist, Erika, Daum, Christopher, Northen, Trent R, Kunde-Ramamoorthy, Govindarajan, Schmitz, Robert J, Gryganskyi, Andrii, Culley, David, Magnuson, Jon, James, Timothy Y, O'Malley, Michelle A, Stajich, Jason E, Spatafora, Joseph W, Visel, Axel, Grigoriev, Igor V
Published in Nature genetics (01.06.2017)
Published in Nature genetics (01.06.2017)
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Mouse Phenome Database: a data repository and analysis suite for curated primary mouse phenotype data
Bogue, Molly A, Philip, Vivek M, Walton, David O, Grubb, Stephen C, Dunn, Matthew H, Kolishovski, Georgi, Emerson, Jake, Mukherjee, Gaurab, Stearns, Timothy, He, Hao, Sinha, Vinita, Kadakkuzha, Beena, Kunde-Ramamoorthy, Govindarajan, Chesler, Elissa J
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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Journal Article
Mouse Phenome Database: towards a more FAIR-compliant and TRUST-worthy data repository and tool suite for phenotypes and genotypes
Bogue, Molly A, Ball, Robyn L, Philip, Vivek M, Walton, David O, Dunn, Matthew H, Kolishovski, Georgi, Lamoureux, Anna, Gerring, Matthew, Liang, Hongping, Emerson, Jake, Stearns, Tim, He, Hao, Mukherjee, Gaurab, Bluis, John, Desai, Sejal, Sundberg, Beth, Kadakkuzha, Beena, Kunde-Ramamoorthy, Govindarajan, Chesler, Elissa J
Published in Nucleic acids research (06.01.2023)
Published in Nucleic acids research (06.01.2023)
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Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
Chen, Xi, Xu, Han, Yuan, Ping, Fang, Fang, Huss, Mikael, Vega, Vinsensius B., Wong, Eleanor, Orlov, Yuriy L., Zhang, Weiwei, Jiang, Jianming, Loh, Yuin-Han, Yeo, Hock Chuan, Yeo, Zhen Xuan, Narang, Vipin, Govindarajan, Kunde Ramamoorthy, Leong, Bernard, Shahab, Atif, Ruan, Yijun, Bourque, Guillaume, Sung, Wing-Kin, Clarke, Neil D., Wei, Chia-Lin, Ng, Huck-Hui
Published in Cell (13.06.2008)
Published in Cell (13.06.2008)
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Oral Pathobiont Activates Anti-Apoptotic Pathway, Promoting both Immune Suppression and Oncogenic Cell Proliferation
Arjunan, Pachiappan, Meghil, Mohamed M, Pi, Wenhu, Xu, Jinxian, Lang, Liwei, El-Awady, Ahmed, Sullivan, William, Rajendran, Mythilypriya, Rabelo, Mariana Sousa, Wang, Tong, Tawfik, Omnia K, Kunde-Ramamoorthy, Govindarajan, Singh, Nagendra, Muthusamy, Thangaraju, Susin, Cristiano, Teng, Yong, Arce, Roger M, Cutler, Christopher W
Published in Scientific reports (09.11.2018)
Published in Scientific reports (09.11.2018)
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The JAX Synteny Browser for mouse-human comparative genomics
Kolishovski, Georgi, Lamoureux, Anna, Hale, Paul, Richardson, Joel E., Recla, Jill M., Adesanya, Omoluyi, Simons, Al, Kunde-Ramamoorthy, Govindarajan, Bult, Carol J.
Published in Mammalian genome (01.12.2019)
Published in Mammalian genome (01.12.2019)
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GenomeMUSter mouse genetic variation service enables multitrait, multipopulation data integration and analysis
Ball, Robyn L, Bogue, Molly A, Liang, Hongping, Srivastava, Anuj, Ashbrook, David G, Lamoureux, Anna, Gerring, Matthew W, Hatoum, Alexander S, Kim, Matthew J, He, Hao, Emerson, Jake, Berger, Alexander K, Walton, David O, Sheppard, Keith, El Kassaby, Baha, Castellanos, Francisco, Kunde-Ramamoorthy, Govindarajan, Lu, Lu, Bluis, John, Desai, Sejal, Sundberg, Beth A, Peltz, Gary, Fang, Zhuoqing, Churchill, Gary A, Williams, Robert W, Agrawal, Arpana, Bult, Carol J, Philip, Vivek M, Chesler, Elissa J
Published in Genome research (01.01.2024)
Published in Genome research (01.01.2024)
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