Pyteomics 4.0: Five Years of Development of a Python Proteomics Framework
Levitsky, Lev I, Klein, Joshua A, Ivanov, Mark V, Gorshkov, Mikhail V
Published in Journal of proteome research (01.02.2019)
Published in Journal of proteome research (01.02.2019)
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Journal Article
Potential of Negative-Ion-Mode Proteomics: An MS1-Only Approach
Penanes, Pelayo A., Gorshkov, Vladimir, Ivanov, Mark V., Gorshkov, Mikhail V., Kjeldsen, Frank
Published in Journal of proteome research (04.08.2023)
Published in Journal of proteome research (04.08.2023)
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Journal Article
IQMMA: Efficient MS1 Intensity Extraction Pipeline Using Multiple Feature Detection Algorithms for DDA Proteomics
Postoenko, Valeriy I., Garibova, Leyla A., Levitsky, Lev I., Bubis, Julia A., Gorshkov, Mikhail V., Ivanov, Mark V.
Published in Journal of proteome research (01.09.2023)
Published in Journal of proteome research (01.09.2023)
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Journal Article
Identification of Alternative Splicing in Proteomes of Human Melanoma Cell Lines without RNA Sequencing Data
Lobas, Anna A, Solovyeva, Elizaveta M, Levitsky, Lev I, Goncharov, Anton O, Lyssuk, Elena Y, Larin, Sergey S, Moshkovskii, Sergei A, Gorshkov, Mikhail V
Published in International journal of molecular sciences (27.01.2023)
Published in International journal of molecular sciences (27.01.2023)
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Journal Article
Predictive chromatography of peptides and proteins as a complementary tool for proteomics
Tarasova, Irina A, Masselon, Christophe D, Gorshkov, Alexander V, Gorshkov, Mikhail V
Published in Analyst (London) (01.01.2016)
Published in Analyst (London) (01.01.2016)
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Journal Article
Multiomic Profiling Identified EGF Receptor Signaling as a Potential Inhibitor of Type I Interferon Response in Models of Oncolytic Therapy by Vesicular Stomatitis Virus
Nikitina, Anastasia S, Lipatova, Anastasia V, Goncharov, Anton O, Kliuchnikova, Anna A, Pyatnitskiy, Mikhail A, Kuznetsova, Ksenia G, Hamad, Azzam, Vorobyev, Pavel O, Alekseeva, Olga N, Mahmoud, Marah, Shakiba, Yasmin, Anufrieva, Ksenia S, Arapidi, Georgy P, Ivanov, Mark V, Tarasova, Irina A, Gorshkov, Mikhail V, Chumakov, Peter M, Moshkovskii, Sergei A
Published in International journal of molecular sciences (08.05.2022)
Published in International journal of molecular sciences (08.05.2022)
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Journal Article
Proteogenomics of Malignant Melanoma Cell Lines: The Effect of Stringency of Exome Data Filtering on Variant Peptide Identification in Shotgun Proteomics
Lobas, Anna A, Pyatnitskiy, Mikhail A, Chernobrovkin, Alexey L, Ilina, Irina Y, Karpov, Dmitry S, Solovyeva, Elizaveta M, Kuznetsova, Ksenia G, Ivanov, Mark V, Lyssuk, Elena Y, Kliuchnikova, Anna A, Voronko, Olga E, Larin, Sergey S, Zubarev, Roman A, Gorshkov, Mikhail V, Moshkovskii, Sergei A
Published in Journal of proteome research (04.05.2018)
Published in Journal of proteome research (04.05.2018)
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Journal Article
Liquid Chromatography at Critical Conditions: Comprehensive Approach to Sequence-Dependent Retention Time Prediction
Gorshkov, Alexander V, Tarasova, Irina A, Evreinov, Victor V, Savitski, Mikhail M, Nielsen, Michael L, Zubarev, Roman A, Gorshkov, Mikhail V
Published in Analytical chemistry (Washington) (15.11.2006)
Published in Analytical chemistry (Washington) (15.11.2006)
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Journal Article
Retention time prediction using the model of liquid chromatography of biomacromolecules at critical conditions in LC-MS phosphopeptide analysis
Perlova, Tatiana Yu, Goloborodko, Anton A, Margolin, Yelena, Pridatchenko, Marina L, Tarasova, Irina A, Gorshkov, Alexander V, Moskovets, Eugene, Ivanov, Alexander R, Gorshkov, Mikhail V
Published in Proteomics (Weinheim) (01.10.2010)
Published in Proteomics (Weinheim) (01.10.2010)
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Journal Article
Reanalysis of DIA Data Demonstrates the Capabilities of MS/MS-Free Proteomics to Reveal New Biological Insights in Disease-Related Samples
Ivanov, Mark V., Kopeykina, Anna S., Gorshkov, Mikhail V.
Published in Journal of the American Society for Mass Spectrometry (07.08.2024)
Published in Journal of the American Society for Mass Spectrometry (07.08.2024)
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Journal Article
Influence of the Number of Axial Bexarotene Ligands on the Cytotoxicity of Pt(IV) Analogs of Oxaliplatin
Milaeva, E. R., Galanski, Markus, Keppler, Bernhard K., Nazarov, Alexey A., Gorshkov, Mikhail V., Lobas, Anna A., Lesovaya, Ekaterina A., Kirsanov, Kirill I., Zhidkova, Ekaterina M., Maximova, Varvara P., Zenin, Ilia V., Nosova, Yulia N., Kovaleva, Olga N.
Published in Bioinorganic Chemistry and Applications (01.01.2017)
Published in Bioinorganic Chemistry and Applications (01.01.2017)
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Journal Article
Biosaur: An open-source Python software for liquid chromatography-mass spectrometry peptide feature detection with ion mobility support
Abdrakhimov, Daniil A, Bubis, Julia A, Gorshkov, Vladimir, Kjeldsen, Frank, Gorshkov, Mikhail V, Ivanov, Mark V
Published in Rapid communications in mass spectrometry (28.01.2021)
Published in Rapid communications in mass spectrometry (28.01.2021)
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Journal Article
Unbiased False Discovery Rate Estimation for Shotgun Proteomics Based on the Target-Decoy Approach
Levitsky, Lev I, Ivanov, Mark V, Lobas, Anna A, Gorshkov, Mikhail V
Published in Journal of proteome research (03.02.2017)
Published in Journal of proteome research (03.02.2017)
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Journal Article
Boosting MS1-only Proteomics with Machine Learning Allows 2000 Protein Identifications in Single-Shot Human Proteome Analysis Using 5 min HPLC Gradient
Ivanov, Mark V, Bubis, Julia A, Gorshkov, Vladimir, Abdrakhimov, Daniil A, Kjeldsen, Frank, Gorshkov, Mikhail V
Published in Journal of proteome research (02.04.2021)
Published in Journal of proteome research (02.04.2021)
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Journal Article
Ultrafast Proteomics
Fedorov, Ivan I., Protasov, Sergey A., Tarasova, Irina A., Gorshkov, Mikhail V.
Published in Biochemistry (Moscow) (01.08.2024)
Published in Biochemistry (Moscow) (01.08.2024)
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Journal Article
Observation of ion coalescence in Orbitrap Fourier transform mass spectrometry
Gorshkov, Mikhail V., Fornelli, Luca, Tsybin, Yury O.
Published in Rapid communications in mass spectrometry (15.08.2012)
Published in Rapid communications in mass spectrometry (15.08.2012)
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Journal Article
Protein corona formed on silver nanoparticles in blood plasma is highly selective and resistant to physicochemical changes of the solution
Gorshkov, Vladimir, Bubis, Julia A, Solovyeva, Elizaveta M, Gorshkov, Mikhail V, Kjeldsen, Frank
Published in Environmental science. Nano (01.04.2019)
Published in Environmental science. Nano (01.04.2019)
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