complete genome sequence of fibrobacter succinogenes S85 reveals a cellulolytic and metabolic specialist
Suen, Garret, Weimer, Paul J, Stevenson, David M, Aylward, Frank O, Boyum, Julie, Deneke, Jan, Drinkwater, Colleen, Ivanova, Natalia N, Mikhailova, Natalia, Chertkov, Olga, Goodwin, Lynne A, Currie, Cameron R, Mead, David, Brumm, Phillip J
Published in PloS one (19.04.2011)
Published in PloS one (19.04.2011)
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An insect herbivore microbiome with high plant biomass-degrading capacity
Suen, Garret, Scott, Jarrod J, Aylward, Frank O, Adams, Sandra M, Tringe, Susannah G, Pinto-Tomás, Adrián A, Foster, Clifton E, Pauly, Markus, Weimer, Paul J, Barry, Kerrie W, Goodwin, Lynne A, Bouffard, Pascal, Li, Lewyn, Osterberger, Jolene, Harkins, Timothy T, Slater, Steven C, Donohue, Timothy J, Currie, Cameron R
Published in PLoS genetics (01.09.2010)
Published in PLoS genetics (01.09.2010)
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The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation
Mavromatis, Konstantinos, Land, Miriam L, Brettin, Thomas S, Quest, Daniel J, Copeland, Alex, Clum, Alicia, Goodwin, Lynne, Woyke, Tanja, Lapidus, Alla, Klenk, Hans Peter, Cottingham, Robert W, Kyrpides, Nikos C
Published in PloS one (12.12.2012)
Published in PloS one (12.12.2012)
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Comparison of 26 Sphingomonad Genomes Reveals Diverse Environmental Adaptations and Biodegradative Capabilities
AYLWARD, Frank O, MCDONALD, Bradon R, ADAMS, Sandra M, VALENZUELA, Alejandra, SCHMIDT, Rebeccah A, GOODWIN, Lynne A, WOYKE, Tanja, CURRIE, Cameron R, SUEN, Garret, POULSEN, Michael
Published in Applied and Environmental Microbiology (01.06.2013)
Published in Applied and Environmental Microbiology (01.06.2013)
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Cellulose-degrading bacteria associated with the invasive woodwasp Sirex noctilio
Adams, Aaron S, Jordan, Michelle S, Adams, Sandye M, Suen, Garret, Goodwin, Lynne A, Davenport, Karen W, Currie, Cameron R, Raffa, Kenneth F
Published in The ISME Journal (01.08.2011)
Published in The ISME Journal (01.08.2011)
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Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics
Emerson, David, Field, Erin K, Chertkov, Olga, Davenport, Karen W, Goodwin, Lynne, Munk, Christine, Nolan, Matt, Woyke, Tanja
Published in Frontiers in microbiology (2013)
Published in Frontiers in microbiology (2013)
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Leucoagaricus gongylophorus Produces Diverse Enzymes for the Degradation of Recalcitrant Plant Polymers in Leaf-Cutter Ant Fungus Gardens
AYLWARD, Frank O, BURNUM-JOHNSON, Kristin E, MALFATTI, Stephanie A, MONROE, Matthew E, PURVINE, Samuel O, GOODWIN, Lynne A, SMITH, Richard D, WEINSTOCK, George M, GERARDO, Nicole M, SUEN, Garret, LIPTON, Mary S, CURRIE, Cameron R, TRINGE, Susannah G, TEILING, Clotilde, TREMMEL, Daniel M, MOELLER, Joseph A, SCOTT, Jarrod J, BARRY, Kerrie W, PIEHOWSKI, Paul D, NICORA, Carrie D
Published in Applied and Environmental Microbiology (01.06.2013)
Published in Applied and Environmental Microbiology (01.06.2013)
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genome of Syntrophorhabdus aromaticivorans strain UI provides new insights for syntrophic aromatic compound metabolism and electron flow
Nobu, Masaru K, Narihiro, Takashi, Hideyuki, Tamaki, Qiu, Yan‐Ling, Sekiguchi, Yuji, Woyke, Tanja, Goodwin, Lynne, Davenport, Karen W, Kamagata, Yoichi, Liu, Wen‐Tso
Published in Environmental microbiology (01.12.2015)
Published in Environmental microbiology (01.12.2015)
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Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti
Galardini, Marco, Mengoni, Alessio, Brilli, Matteo, Pini, Francesco, Fioravanti, Antonella, Lucas, Susan, Lapidus, Alla, Cheng, Jan-Fang, Goodwin, Lynne, Pitluck, Samuel, Land, Miriam, Hauser, Loren, Woyke, Tanja, Mikhailova, Natalia, Ivanova, Natalia, Daligault, Hajnalka, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Cliff, Teshima, Hazuki, Mocali, Stefano, Bazzicalupo, Marco, Biondi, Emanuele G
Published in BMC genomics (12.05.2011)
Published in BMC genomics (12.05.2011)
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Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens
Aylward, Frank O, Burnum, Kristin E, Scott, Jarrod J, Suen, Garret, Tringe, Susannah G, Adams, Sandra M, Barry, Kerrie W, Nicora, Carrie D, Piehowski, Paul D, Purvine, Samuel O, Starrett, Gabriel J, Goodwin, Lynne A, Smith, Richard D, Lipton, Mary S, Currie, Cameron R
Published in The ISME Journal (01.09.2012)
Published in The ISME Journal (01.09.2012)
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The expanded diversity of methylophilaceae from Lake Washington through cultivation and genomic sequencing of novel ecotypes
Beck, David A C, McTaggart, Tami L, Setboonsarng, Usanisa, Vorobev, Alexey, Kalyuzhnaya, Marina G, Ivanova, Natalia, Goodwin, Lynne, Woyke, Tanja, Lidstrom, Mary E, Chistoserdova, Ludmila
Published in PloS one (24.07.2014)
Published in PloS one (24.07.2014)
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Complete Genome Sequence of the Metabolically Versatile Plant Growth-Promoting Endophyte Variovorax paradoxus S110
HAN, Jong-In, CHOI, Hong-Kyu, HUR, Cheol-Goo, SPAIN, Jim C, OVCHINNIKOVA, Galina, GOODWIN, Lynne, HAN, Cliff, LEE, Seung-Won, ORWIN, Paul M, KIM, Jina, LAROE, Sarah L, KIM, Tae-Gyu, O'NEIL, Jennifer, LEADBETTER, Jared R, SANG YUP LEE
Published in Journal of Bacteriology (01.03.2011)
Published in Journal of Bacteriology (01.03.2011)
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Complete Genome of the Cellulolytic Ruminal Bacterium Ruminococcus albus 7
SUEN, Garret, STEVENSON, David M, HAUSER, Loren J, IVANOVA, Natalia N, KYRPIDES, Nikos C, LAND, Miriam L, LAPIDUS, Alla, LUCAS, Susan, OVCHINNIKOVA, Galina, PITLUCK, Sam, TAPIA, Roxanne, WOYKE, Tanja, BRUCE, David C, BOYUM, Julie, MEAD, David, WEIMER, Paul J, CHERTKOV, Olga, COPELAND, Alex, CHENG, Jan-Feng, DETTER, Chris, DETTER, John C, GOODWIN, Lynne A, HAN, Cliff S
Published in Journal of Bacteriology (01.10.2011)
Published in Journal of Bacteriology (01.10.2011)
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Complete Genome Sequence of the Cellulolytic Thermophile Clostridium thermocellum DSM1313
FEINBERG, Lawrence, FODEN, Justine, CHENG, Jan-Fang, PITLUCK, Samuel, WOYKE, Tanja, IVANOVA, Natalia, MIKHAILOVA, Natalia, LAND, Miriam, HAUSER, Loren, AARON ARGYROS, D, GOODWIN, Lynne, HOGSETT, David, BARRETT, Trisha, CAIAZZA, Nicky, WALSTON DAVENPORT, Karen, BRUCE, David, DETTER, Chris, TAPIA, Roxanne, HAN, Cliff, LAPIDUS, Alia, LUCAS, Susan
Published in Journal of Bacteriology (01.06.2011)
Published in Journal of Bacteriology (01.06.2011)
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Genome Sequence of the Arctic Methanotroph Methylobacter tundripaludum SV96
Svenning, Mette M, Hestnes, Anne Grethe, Wartiainen, Ingvild, Stein, Lisa Y, Klotz, Martin G, Kalyuzhnaya, Marina G, Spang, Anja, Bringel, Françoise, Vuilleumier, Stéphane, Lajus, Aurélie, Médigue, Claudine, Bruce, David C, Cheng, Jan-Fang, Goodwin, Lynne, Ivanova, Natalia, Han, James, Han, Cliff S, Hauser, Loren, Held, Brittany, Land, Miriam L, Lapidus, Alla, Lucas, Susan, Nolan, Matt, Pitluck, Sam, Woyke, Tanja
Published in Journal of Bacteriology (01.11.2011)
Published in Journal of Bacteriology (01.11.2011)
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A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T
Siddaramappa, Shivakumara, Challacombe, Jean F, Decastro, Rosana E, Pfeiffer, Friedhelm, Sastre, Diego E, Giménez, María I, Paggi, Roberto A, Detter, John C, Davenport, Karen W, Goodwin, Lynne A, Kyrpides, Nikos, Tapia, Roxanne, Pitluck, Samuel, Lucas, Susan, Woyke, Tanja, Maupin-Furlow, Julie A
Published in BMC genomics (04.05.2012)
Published in BMC genomics (04.05.2012)
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Genome Sequence of the 1,4-Dioxane-Degrading Pseudonocardia dioxanivorans Strain CB1190
SALES, Christopher M, MAHENDRA, Shaily, SCZYRBA, Alexander, ALVAREZ-COHEN, Lisa, GROSTERN, Ariel, PARALES, Rebecca E, GOODWIN, Lynne A, WOYKE, Tanja, NOLAN, Matt, LAPIDUS, Alla, CHERTKOV, Olga, OVCHINNIKOVA, Galina
Published in Journal of bacteriology (01.09.2011)
Published in Journal of bacteriology (01.09.2011)
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Complete genome sequence of Pseudomonas stutzeri strain RCH2 isolated from a Hexavalent Chromium [Cr(VI)] contaminated site
Chakraborty, Romy, Woo, Hannah, Dehal, Paramvir, Walker, Robert, Zemla, Marcin, Auer, Manfred, Goodwin, Lynne A, Kazakov, Alexey, Novichkov, Pavel, Arkin, Adam P, Hazen, Terry C
Published in Environmental microbiome (08.02.2017)
Published in Environmental microbiome (08.02.2017)
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Multiphyletic origins of methylotrophy in Alphaproteobacteria, exemplified by comparative genomics of Lake Washington isolates
Beck, David A. C., McTaggart, Tami L., Setboonsarng, Usanisa, Vorobev, Alexey, Goodwin, Lynne, Shapiro, Nicole, Woyke, Tanja, Kalyuzhnaya, Marina G., Lidstrom, Mary E., Chistoserdova, Ludmila
Published in Environmental microbiology (01.03.2015)
Published in Environmental microbiology (01.03.2015)
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Trichodesmium genome maintains abundant, widespread noncoding DNA in situ, despite oligotrophic lifestyle
Walworth, Nathan, Pfreundt, Ulrike, Nelson, William C, Mincer, Tracy, Heidelberg, John F, Fu, Feixue, Waterbury, John B, Glavina del Rio, Tijana, Goodwin, Lynne, Kyrpides, Nikos C, Land, Miriam L, Woyke, Tanja, Hutchins, David A, Hess, Wolfgang R, Webb, Eric A
Published in Proceedings of the National Academy of Sciences - PNAS (07.04.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (07.04.2015)
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