PRMT5 and CDK4/6 inhibition result in distinctive patterns of alternative splicing in melanoma
Chan, Lok Hang, Wang, Peihan, Abuhammad, Shatha, Lim, Lydia Rui Jia, Cursons, Joseph, Sheppard, Karen E, Goode, David L
Published in PloS one (02.11.2023)
Published in PloS one (02.11.2023)
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Spatial analysis with SPIAT and spaSim to characterize and simulate tissue microenvironments
Feng, Yuzhou, Yang, Tianpei, Zhu, John, Li, Mabel, Doyle, Maria, Ozcoban, Volkan, Bass, Greg T, Pizzolla, Angela, Cain, Lachlan, Weng, Sirui, Pasam, Anupama, Kocovski, Nikolce, Huang, Yu-Kuan, Keam, Simon P, Speed, Terence P, Neeson, Paul J, Pearson, Richard B, Sandhu, Shahneen, Goode, David L, Trigos, Anna S
Published in Nature communications (15.05.2023)
Published in Nature communications (15.05.2023)
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Journal Article
MTOR signaling orchestrates stress-induced mutagenesis, facilitating adaptive evolution in cancer
Cipponi, Arcadi, Goode, David L., Bedo, Justin, McCabe, Mark J., Pajic, Marina, Croucher, David R., Rajal, Alvaro Gonzalez, Junankar, Simon R., Saunders, Darren N., Lobachevsky, Pavel, Papenfuss, Anthony T., Nessem, Danielle, Nobis, Max, Warren, Sean C., Timpson, Paul, Cowley, Mark, Vargas, Ana C., Qiu, Min R., Generali, Daniele G., Keerthikumar, Shivakumar, Nguyen, Uyen, Corcoran, Niall M., Long, Georgina V., Blay, Jean-Yves, Thomas, David M.
Published in Science (American Association for the Advancement of Science) (05.06.2020)
Published in Science (American Association for the Advancement of Science) (05.06.2020)
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Disruption of metazoan gene regulatory networks in cancer alters the balance of co-expression between genes of unicellular and multicellular origins
Trigos, Anna S, Bongiovanni, Felicia, Zhang, Yangyi, Zethoven, Maia, Tothill, Richard, Pearson, Richard, Papenfuss, Anthony T, Goode, David L
Published in Genome Biology (29.04.2024)
Published in Genome Biology (29.04.2024)
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The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes
Montgomery, Stephen B, Goode, David L, Kvikstad, Erika, Albers, Cornelis A, Zhang, Zhengdong D, Mu, Xinmeng Jasmine, Ananda, Guruprasad, Howie, Bryan, Karczewski, Konrad J, Smith, Kevin S, Anaya, Vanessa, Richardson, Rhea, Davis, Joe, MacArthur, Daniel G, Sidow, Arend, Duret, Laurent, Gerstein, Mark, Makova, Kateryna D, Marchini, Jonathan, McVean, Gil, Lunter, Gerton
Published in Genome research (01.05.2013)
Published in Genome research (01.05.2013)
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Journal Article
Single-nucleotide evolutionary constraint scores highlight disease-causing mutations
Cooper, Gregory M, Goode, David L, Ng, Sarah B, Sidow, Arend, Bamshad, Michael J, Shendure, Jay, Nickerson, Deborah A
Published in Nature methods (01.04.2010)
Published in Nature methods (01.04.2010)
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Journal Article
High frequency of germline TP53 mutations in a prospective adult-onset sarcoma cohort
Mitchell, Gillian, Ballinger, Mandy L, Wong, Stephen, Hewitt, Chelsee, James, Paul, Young, Mary-Anne, Cipponi, Arcadi, Pang, Tiffany, Goode, David L, Dobrovic, Alex, Thomas, David M
Published in PloS one (22.07.2013)
Published in PloS one (22.07.2013)
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Journal Article
The H3K4-Methyl Epigenome Regulates Leukemia Stem Cell Oncogenic Potential
Wong, Stephen H.K., Goode, David L., Iwasaki, Masayuki, Wei, Michael C., Kuo, Hsu-Ping, Zhu, Li, Schneidawind, Dominik, Duque-Afonso, Jesus, Weng, Ziming, Cleary, Michael L.
Published in Cancer cell (10.08.2015)
Published in Cancer cell (10.08.2015)
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Journal Article
Mast Cell-Derived SAMD14 Is a Novel Regulator of the Human Prostate Tumor Microenvironment
Teng, Linda K H, Pereira, Brooke A, Keerthikumar, Shivakumar, Huang, Cheng, Niranjan, Birunthi, Lee, Sophie N, Richards, Michelle, Schittenhelm, Ralf B, Furic, Luc, Goode, David L, Lawrence, Mitchell G, Taylor, Renea A, Ellem, Stuart J, Risbridger, Gail P, Lister, Natalie L
Published in Cancers (11.03.2021)
Published in Cancers (11.03.2021)
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Journal Article
Copy number analysis by low coverage whole genome sequencing using ultra low-input DNA from formalin-fixed paraffin embedded tumor tissue
Kader, Tanjina, Goode, David L, Wong, Stephen Q, Connaughton, Jacquie, Rowley, Simone M, Devereux, Lisa, Byrne, David, Fox, Stephen B, Mir Arnau, Gisela, Tothill, Richard W, Campbell, Ian G, Gorringe, Kylie L
Published in Genome medicine (15.11.2016)
Published in Genome medicine (15.11.2016)
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Journal Article
Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes
Goode, David L, Cooper, Gregory M, Schmutz, Jeremy, Dickson, Mark, Gonzales, Eidelyn, Tsai, Ming, Karra, Kalpana, Davydov, Eugene, Batzoglou, Serafim, Myers, Richard M, Sidow, Arend
Published in Genome research (01.03.2010)
Published in Genome research (01.03.2010)
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Journal Article
Bioinformatics pipelines for targeted resequencing and whole-exome sequencing of human and mouse genomes: a virtual appliance approach for instant deployment
Li, Jason, Doyle, Maria A, Saeed, Isaam, Wong, Stephen Q, Mar, Victoria, Goode, David L, Caramia, Franco, Doig, Ken, Ryland, Georgina L, Thompson, Ella R, Hunter, Sally M, Halgamuge, Saman K, Ellul, Jason, Dobrovic, Alexander, Campbell, Ian G, Papenfuss, Anthony T, McArthur, Grant A, Tothill, Richard W
Published in PloS one (01.04.2014)
Published in PloS one (01.04.2014)
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Journal Article
Salmonella phage ST64B encodes a member of the SseK/NleB effector family
Brown, Nat F, Coombes, Brian K, Bishop, Jenna L, Wickham, Mark E, Lowden, Michael J, Gal-Mor, Ohad, Goode, David L, Boyle, Erin C, Sanderson, Kristy L, Finlay, B Brett
Published in PloS one (18.03.2011)
Published in PloS one (18.03.2011)
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Journal Article
Altered interactions between unicellular and multicellular genes drive hallmarks of transformation in a diverse range of solid tumors
Trigos, Anna S., Pearson, Richard B., Papenfuss, Anthony T., Goode, David L.
Published in Proceedings of the National Academy of Sciences - PNAS (13.06.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (13.06.2017)
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Journal Article
Reconstructing an ancestral mammalian immune supercomplex from a marsupial major histocompatibility complex
Belov, Katherine, Deakin, Janine E, Papenfuss, Anthony T, Baker, Michelle L, Melman, Sandra D, Siddle, Hannah V, Gouin, Nicolas, Goode, David L, Sargeant, Tobias J, Robinson, Mark D, Wakefield, Matthew J, Mahony, Shaun, Cross, Joseph G R, Benos, Panayiotis V, Samollow, Paul B, Speed, Terence P, Graves, Jennifer A Marshall, Miller, Robert D
Published in PLoS biology (01.03.2006)
Published in PLoS biology (01.03.2006)
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Journal Article
How the evolution of multicellularity set the stage for cancer
Trigos, Anna S, Pearson, Richard B, Papenfuss, Anthony T, Goode, David L
Published in British journal of cancer (01.01.2018)
Published in British journal of cancer (01.01.2018)
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Journal Article
Androgen receptor enhancer amplification in matched patient‐derived xenografts of primary and castrate‐resistant prostate cancer
Porter, Laura H, Bakshi, Andrew, Pook, David, Clark, Ashlee, Clouston, David, Kourambas, John, Goode, David L, Risbridger, Gail P, Taylor, Renea A, Lawrence, Mitchell G
Published in The Journal of pathology (01.06.2021)
Published in The Journal of pathology (01.06.2021)
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