Impact of transposable elements on genome structure and evolution in bread wheat
Wicker, Thomas, Gundlach, Heidrun, Spannagl, Manuel, Uauy, Cristobal, Borrill, Philippa, Ramírez-González, Ricardo H, De Oliveira, Romain, Mayer, Klaus F X, Paux, Etienne, Choulet, Frédéric
Published in Genome Biology (17.08.2018)
Published in Genome Biology (17.08.2018)
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Journal Article
Field pathogenomics reveals the emergence of a diverse wheat yellow rust population
Hubbard, Amelia, Lewis, Clare M, Yoshida, Kentaro, Ramirez-Gonzalez, Ricardo H, de Vallavieille-Pope, Claude, Thomas, Jane, Kamoun, Sophien, Bayles, Rosemary, Uauy, Cristobal, Saunders, Diane G O
Published in Genome Biology (25.02.2015)
Published in Genome Biology (25.02.2015)
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Journal Article
RNA‐Seq bulked segregant analysis enables the identification of high‐resolution genetic markers for breeding in hexaploid wheat
Ramirez‐Gonzalez, Ricardo H., Segovia, Vanesa, Bird, Nicholas, Fenwick, Paul, Holdgate, Sarah, Berry, Simon, Jack, Peter, Caccamo, Mario, Uauy, Cristobal
Published in Plant biotechnology journal (01.06.2015)
Published in Plant biotechnology journal (01.06.2015)
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Journal Article
Optimizing Rhizobium-legume symbioses by simultaneous measurement of rhizobial competitiveness and N₂ fixation in nodules
Mendoza-Suárez, Marcela A., Geddes, Barney A., Sánchez-Cañizares, Carmen, Ramírez-González, Ricardo H., Kirchhelle, Charlotte, Jorrin, Beatriz, Poole, Philip S.
Published in Proceedings of the National Academy of Sciences - PNAS (05.05.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (05.05.2020)
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Journal Article
A complex receptor locus confers responsiveness to necrosis and ethylene‐inducing like peptides in Brassica napus
Yalcin, Hicret Asli, Jacott, Catherine N., Ramirez‐Gonzalez, Ricardo Humberto, Steuernagel, Burkhard, Sidhu, Gurpinder Singh, Kirby, Rachel, Verbeek, Emma, Schoonbeek, Henk‐jan, Ridout, Christopher J., Wells, Rachel
Published in The Plant journal : for cell and molecular biology (01.07.2024)
Published in The Plant journal : for cell and molecular biology (01.07.2024)
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Journal Article
Uncovering hidden variation in polyploid wheat
Krasileva, Ksenia V., Vasquez-Gross, Hans A., Howell, Tyson, Bailey, Paul, Paraiso, Francine, Clissold, Leah, Simmonds, James, Ramirez-Gonzalez, Ricardo H., Wang, Xiaodong, Borrill, Philippa, Fosker, Christine, Ayling, Sarah, Phillips, Andrew L., Uauy, Cristobal, Dubcovsky, Jorge
Published in Proceedings of the National Academy of Sciences - PNAS (07.02.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (07.02.2017)
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Journal Article
Speed breeding in growth chambers and glasshouses for crop breeding and model plant research
Ghosh, Sreya, Watson, Amy, Gonzalez-Navarro, Oscar E, Ramirez-Gonzalez, Ricardo H, Yanes, Luis, Mendoza-Suárez, Marcela, Simmonds, James, Wells, Rachel, Rayner, Tracey, Green, Phon, Hafeez, Amber, Hayta, Sadiye, Melton, Rachel E, Steed, Andrew, Sarkar, Abhimanyu, Carter, Jeremy, Perkins, Lionel, Lord, John, Tester, Mark, Osbourn, Anne, Moscou, Matthew J, Nicholson, Paul, Harwood, Wendy, Martin, Cathie, Domoney, Claire, Uauy, Cristobal, Hazard, Brittany, Wulff, Brande B H, Hickey, Lee T
Published in Nature protocols (01.12.2018)
Published in Nature protocols (01.12.2018)
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Journal Article
The NLR-Annotator Tool Enables Annotation of the Intracellular Immune Receptor Repertoire
Steuernagel, Burkhard, Witek, Kamil, Krattinger, Simon G, Ramirez-Gonzalez, Ricardo H, Schoonbeek, Henk-Jan, Yu, Guotai, Baggs, Erin, Witek, Agnieszka I, Yadav, Inderjit, Krasileva, Ksenia V, Jones, Jonathan D G, Uauy, Cristobal, Keller, Beat, Ridout, Christopher J, Wulff, Brande B H
Published in Plant physiology (Bethesda) (01.06.2020)
Published in Plant physiology (Bethesda) (01.06.2020)
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Journal Article
Genome-Wide Transcription During Early Wheat Meiosis Is Independent of Synapsis, Ploidy Level, and the Ph1 Locus
Martín, Azahara Carmen, Borrill, Philippa, Higgins, Janet, Alabdullah, Abdulkader, Ramírez-González, Ricardo H, Swarbreck, David, Uauy, Cristobal, Shaw, Peter, Moore, Graham
Published in Frontiers in plant science (04.12.2018)
Published in Frontiers in plant science (04.12.2018)
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Journal Article
Hotspots in the genomic architecture of field drought responses in wheat as breeding targets
Gálvez, Sergio, Mérida-García, Rosa, Camino, Carlos, Borrill, Philippa, Abrouk, Michael, Ramírez-González, Ricardo H., Biyiklioglu, Sezgi, Amil-Ruiz, Francisco, Dorado, Gabriel, Budak, Hikmet, Gonzalez-Dugo, Victoria, Zarco-Tejada, Pablo J., Appels, Rudi, Uauy, Cristobal, Hernandez, Pilar
Published in Functional & integrative genomics (01.03.2019)
Published in Functional & integrative genomics (01.03.2019)
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Journal Article
Pathogen-induced biosynthetic pathways encode defense-related molecules in bread wheat
Polturak, Guy, Dippe, Martin, Stephenson, Michael J, Chandra Misra, Rajesh, Owen, Charlotte, Ramirez-Gonzalez, Ricardo H, Haidoulis, John F, Schoonbeek, Henk-Jan, Chartrain, Laetitia, Borrill, Philippa, Nelson, David R, Brown, James K M, Nicholson, Paul, Uauy, Cristobal, Osbourn, Anne
Published in Proceedings of the National Academy of Sciences - PNAS (19.04.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (19.04.2022)
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Journal Article
Host Subtraction, Filtering and Assembly Validations for Novel Viral Discovery Using Next Generation Sequencing Data
Daly, Gordon M, Leggett, Richard M, Rowe, William, Stubbs, Samuel, Wilkinson, Maxim, Ramirez-Gonzalez, Ricardo H, Caccamo, Mario, Bernal, William, Heeney, Jonathan L
Published in PloS one (22.06.2015)
Published in PloS one (22.06.2015)
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Journal Article
Evolution of an Eurasian avian-like influenza virus in naïve and vaccinated pigs
Murcia, Pablo R, Hughes, Joseph, Battista, Patrizia, Lloyd, Lucy, Baillie, Gregory J, Ramirez-Gonzalez, Ricardo H, Ormond, Doug, Oliver, Karen, Elton, Debra, Mumford, Jennifer A, Caccamo, Mario, Kellam, Paul, Grenfell, Bryan T, Holmes, Edward C, Wood, James L N
Published in PLoS pathogens (01.05.2012)
Published in PLoS pathogens (01.05.2012)
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Journal Article
expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform
Borrill, Philippa, Ramirez-Gonzalez, Ricardo, Uauy, Cristobal
Published in Plant physiology (Bethesda) (01.04.2016)
Published in Plant physiology (Bethesda) (01.04.2016)
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Journal Article
An online database for einkorn wheat to aid in gene discovery and functional genomics studies
Sharma, Parva Kumar, Ahmed, Hanin Ibrahim, Heuberger, Matthias, Koo, Dal-Hoe, Quiroz-Chavez, Jesus, Adhikari, Laxman, Raupp, John, Cauet, Stéphane, Rodde, Nathalie, Cravero, Charlotte, Callot, Caroline, Yadav, Inderjit Singh, Kathiresan, Nagarajan, Athiyannan, Naveenkumar, Ramirez-Gonzalez, Ricardo H, Uauy, Cristobal, Wicker, Thomas, Abrouk, Michael, Gu, Yong Q, Poland, Jesse, Krattinger, Simon G, Lazo, Gerard R, Tiwari, Vijay K
Published in Database : the journal of biological databases and curation (16.11.2023)
Published in Database : the journal of biological databases and curation (16.11.2023)
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Journal Article
A haplotype-led approach to increase the precision of wheat breeding
Brinton, Jemima, Ramirez-Gonzalez, Ricardo H, Simmonds, James, Wingen, Luzie, Orford, Simon, Griffiths, Simon, Haberer, Georg, Spannagl, Manuel, Walkowiak, Sean, Pozniak, Curtis, Uauy, Cristobal
Published in Communications biology (25.11.2020)
Published in Communications biology (25.11.2020)
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Journal Article
PolyMarker: A fast polyploid primer design pipeline
Ramirez-Gonzalez, Ricardo H, Uauy, Cristobal, Caccamo, Mario
Published in Bioinformatics (Oxford, England) (15.06.2015)
Published in Bioinformatics (Oxford, England) (15.06.2015)
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Journal Article
Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de bruijn graphs
Leggett, Richard M, Ramirez-Gonzalez, Ricardo H, Verweij, Walter, Kawashima, Cintia G, Iqbal, Zamin, Jones, Jonathan D G, Caccamo, Mario, Maclean, Daniel
Published in PloS one (25.03.2013)
Published in PloS one (25.03.2013)
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Journal Article