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Key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria: a systematic analysis
Gorrie, Claire L, Da Silva, Anders Gonçalves, Ingle, Danielle J, Higgs, Charlie, Seemann, Torsten, Stinear, Timothy P, Williamson, Deborah A, Kwong, Jason C, Grayson, M Lindsay, Sherry, Norelle L, Howden, Benjamin P
Published in The Lancet. Microbe (01.11.2021)
Published in The Lancet. Microbe (01.11.2021)
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Convergent Evolution Driven by Rifampin Exacerbates the Global Burden of Drug-Resistant Staphylococcus aureus
Guérillot, Romain, Gonçalves da Silva, Anders, Monk, Ian, Giulieri, Stefano, Tomita, Takehiro, Alison, Eloise, Porter, Jessica, Pidot, Sacha, Gao, Wei, Peleg, Anton Y., Seemann, Torsten, Stinear, Timothy P., Howden, Benjamin P.
Published in mSphere (01.01.2018)
Published in mSphere (01.01.2018)
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Tracking the COVID-19 pandemic in Australia using genomics
Seemann, Torsten, Lane, Courtney R., Sherry, Norelle L., Duchene, Sebastian, Gonçalves da Silva, Anders, Caly, Leon, Sait, Michelle, Ballard, Susan A., Horan, Kristy, Schultz, Mark B., Hoang, Tuyet, Easton, Marion, Dougall, Sally, Stinear, Timothy P., Druce, Julian, Catton, Mike, Sutton, Brett, van Diemen, Annaliese, Alpren, Charles, Williamson, Deborah A., Howden, Benjamin P.
Published in Nature communications (01.09.2020)
Published in Nature communications (01.09.2020)
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Evolutionary dynamics of multidrug resistant Salmonella enterica serovar 4,[5],12:i:- in Australia
Ingle, Danielle J., Ambrose, Rebecca L., Baines, Sarah L., Duchene, Sebastian, Gonçalves da Silva, Anders, Lee, Darren Y. J., Jones, Miriam, Valcanis, Mary, Taiaroa, George, Ballard, Susan A., Kirk, Martyn D., Howden, Benjamin P., Pearson, Jaclyn S., Williamson, Deborah A.
Published in Nature communications (09.08.2021)
Published in Nature communications (09.08.2021)
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Genetic evidence for high propagule pressure and long-distance dispersal in monk parakeet (Myiopsitta monachus) invasive populations
Da Silva, Anders Goncalves, Eberhard, Jessica R, Wright, Timothy F, Avery, Michael L, Russello, Michael A
Published in Molecular ecology (01.08.2010)
Published in Molecular ecology (01.08.2010)
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A Supervised Statistical Learning Approach for Accurate Legionella pneumophila Source Attribution during Outbreaks
Buultjens, Andrew H., Chua, Kyra Y. L., Baines, Sarah L., Kwong, Jason, Gao, Wei, Cutcher, Zoe, Adcock, Stuart, Ballard, Susan, Schultz, Mark B., Tomita, Takehiro, Subasinghe, Nela, Carter, Glen P., Pidot, Sacha J., Franklin, Lucinda, Seemann, Torsten, Gonçalves Da Silva, Anders, Howden, Benjamin P., Stinear, Timothy P.
Published in Applied and environmental microbiology (01.11.2017)
Published in Applied and environmental microbiology (01.11.2017)
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Global spread of three multidrug-resistant lineages of Staphylococcus epidermidis
Lee, Jean Y. H., Monk, Ian R., Gonçalves da Silva, Anders, Seemann, Torsten, Chua, Kyra Y. L., Kearns, Angela, Hill, Robert, Woodford, Neil, Bartels, Mette D., Strommenger, Birgit, Laurent, Frederic, Dodémont, Magali, Deplano, Ariane, Patel, Robin, Larsen, Anders R., Korman, Tony M., Stinear, Timothy P., Howden, Benjamin P.
Published in Nature microbiology (01.10.2018)
Published in Nature microbiology (01.10.2018)
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Genomic insights into a sustained national outbreak of Yersinia pseudotuberculosis
Williamson, Deborah A, Baines, Sarah L, Carter, Glen, Gonçalves da Silva, Anders, Ren, Xiaoyun, Sherwood, Jill, Dufour, Muriel, Schultz, Mark B, French, Nigel P, Seemann, Torsten, Stinear, Timothy P, Howden, Benjamin P
Published in Genome biology and evolution (09.01.2017)
Published in Genome biology and evolution (09.01.2017)
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Scope for genetic rescue of an endangered subspecies though re-establishing natural gene flow with another subspecies
Harrisson, Katherine A., Pavlova, Alexandra, Gonçalves da Silva, Anders, Rose, Rebecca, Bull, James K., Lancaster, Melanie L., Murray, Neil, Quin, Bruce, Menkhorst, Peter, Magrath, Michael J. L., Sunnucks, Paul
Published in Molecular ecology (01.03.2016)
Published in Molecular ecology (01.03.2016)
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Topical Antibiotic Use Coselects for the Carriage of Mobile Genetic Elements Conferring Resistance to Unrelated Antimicrobials in Staphylococcus aureus
Carter, Glen P., Schultz, Mark B., Baines, Sarah L., Gonçalves da Silva, Anders, Heffernan, Helen, Tiong, Audrey, Pham, Peter H., Monk, Ian R., Stinear, Timothy P., Howden, Benjamin P., Williamson, Deborah A.
Published in Antimicrobial agents and chemotherapy (01.02.2018)
Published in Antimicrobial agents and chemotherapy (01.02.2018)
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Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package
Griffiths, Emma J, Timme, Ruth E, Mendes, Catarina Inês, Page, Andrew J, Alikhan, Nabil-Fareed, Fornika, Dan, Maguire, Finlay, Campos, Josefina, Park, Daniel, Olawoye, Idowu B, Oluniyi, Paul E, Anderson, Dominique, Christoffels, Alan, da Silva, Anders Gonçalves, Cameron, Rhiannon, Dooley, Damion, Katz, Lee S, Black, Allison, Karsch-Mizrachi, Ilene, Barrett, Tanya, Johnston, Anjanette, Connor, Thomas R, Nicholls, Samuel M, Witney, Adam A, Tyson, Gregory H, Tausch, Simon H, Raphenya, Amogelang R, Alcock, Brian, Aanensen, David M, Hodcroft, Emma, Hsiao, William W L, Vasconcelos, Ana Tereza R, MacCannell, Duncan R
Published in Gigascience (16.02.2022)
Published in Gigascience (16.02.2022)
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Translating genomics into practice for real-time surveillance and response to carbapenemase-producing Enterobacteriaceae: evidence from a complex multi-institutional KPC outbreak
Kwong, Jason C., Lane, Courtney R., Romanes, Finn, Gonçalves da Silva, Anders, Easton, Marion, Cronin, Katie, Waters, Mary Jo, Tomita, Takehiro, Stevens, Kerrie, Schultz, Mark B., Baines, Sarah L., Sherry, Norelle L., Carter, Glen P., Mu, Andre, Sait, Michelle, Ballard, Susan A., Seemann, Torsten, Stinear, Timothy P., Howden, Benjamin P.
Published in PeerJ (San Francisco, CA) (03.01.2018)
Published in PeerJ (San Francisco, CA) (03.01.2018)
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Genetic Approaches Refine Ex Situ Lowland Tapir (Tapirus terrestris) Conservation
Gonçalves da Silva, Anders, Lalonde, Danielle R, Quse, Viviana, Shoemaker, Alan, Russello, Michael A
Published in The Journal of heredity (01.09.2010)
Published in The Journal of heredity (01.09.2010)
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Increasing tolerance of hospital Enterococcus faecium to handwash alcohols
Pidot, Sacha J, Gao, Wei, Buultjens, Andrew H, Monk, Ian R, Guerillot, Romain, Carter, Glen P, Lee, Jean Y H, Lam, Margaret M C, Grayson, M Lindsay, Ballard, Susan A, Mahony, Andrew A, Grabsch, Elizabeth A, Kotsanas, Despina, Korman, Tony M, Coombs, Geoffrey W, Robinson, J Owen, Gonçalves da Silva, Anders, Seemann, Torsten, Howden, Benjamin P, Johnson, Paul D R, Stinear, Timothy P
Published in Science translational medicine (01.08.2018)
Published in Science translational medicine (01.08.2018)
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Reconstruction of the Genomes of Drug-Resistant Pathogens for Outbreak Investigation through Metagenomic Sequencing
Mu, Andre, Kwong, Jason C., Isles, Nicole S., Gonçalves da Silva, Anders, Schultz, Mark B., Ballard, Susan A., Lane, Courtney R., Carter, Glen P., Williamson, Deborah A., Seemann, Torsten, Stinear, Timothy P., Howden, Benjamin P.
Published in mSphere (16.01.2019)
Published in mSphere (16.01.2019)
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Genomics for Molecular Epidemiology and Detecting Transmission of Carbapenemase-Producing Enterobacterales in Victoria, Australia, 2012 to 2016
Sherry, Norelle L., Lane, Courtney R., Kwong, Jason C., Schultz, Mark, Sait, Michelle, Stevens, Kerrie, Ballard, Susan, Gonçalves da Silva, Anders, Seemann, Torsten, Gorrie, Claire L., Stinear, Timothy P., Williamson, Deborah A., Brett, Judith, van Diemen, Annaliese, Easton, Marion, Howden, Benjamin P.
Published in Journal of clinical microbiology (01.09.2019)
Published in Journal of clinical microbiology (01.09.2019)
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iRel: software for implementing pairwise relatedness estimators and evaluating their performance
Gonçalves da Silva, Anders, Russello, Michael A.
Published in Conservation genetics resources (01.01.2011)
Published in Conservation genetics resources (01.01.2011)
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Co-circulation of Multidrug-resistant Shigella Among Men Who Have Sex With Men in Australia
Ingle, Danielle J., Easton, Marion, Valcanis, Mary, Seemann, Torsten, Kwong, Jason C., Stephens, Nicola, Carter, Glen P., da Silva, Anders Gonçalves, Adamopoulos, James, Baines, Sarah L., Holt, Kathryn E., Chow, Eric P. F., Fairley, Christopher K., Chen, Marcus Y., Kirk, Martyn D., Howden, Benjamin P., Williamson, Deborah A.
Published in Clinical infectious diseases (15.10.2019)
Published in Clinical infectious diseases (15.10.2019)
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