ParaDB: A manually curated database containing genomic annotation for the human pathogenic fungi Paracoccidioides spp
Aciole Barbosa, David, Menegidio, Fabiano Bezerra, Alencar, Valquíria Campos, Gonçalves, Rafael S, Silva, Juliana de Fátima Santos, Vilas Boas, Renata Ozelami, Faustino de Maria, Yara Natércia Lima, Jabes, Daniela Leite, Costa de Oliveira, Regina, Nunes, Luiz R
Published in PLoS neglected tropical diseases (01.07.2019)
Published in PLoS neglected tropical diseases (01.07.2019)
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BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures
Geistlinger, Ludwig, Mirzayi, Chloe, Zohra, Fatima, Azhar, Rimsha, Elsafoury, Shaimaa, Grieve, Clare, Wokaty, Jennifer, Gamboa-Tuz, Samuel David, Sengupta, Pratyay, Hecht, Issac, Ravikrishnan, Aarthi, Gonçalves, Rafael S., Franzosa, Eric, Raman, Karthik, Carey, Vincent, Dowd, Jennifer B., Jones, Heidi E., Davis, Sean, Segata, Nicola, Huttenhower, Curtis, Waldron, Levi
Published in Nature biotechnology (01.05.2024)
Published in Nature biotechnology (01.05.2024)
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Structural phase transition and suppressed Griffiths-like phase induced by Sr2+-doping in LaCr0.5Mn0.5O3 compound
Silva, Romualdo S., Fontes, J. Fernando D., Ferreira, Nilson S., Gonçalves, Rafael S., da Costa, Marcelo E.H. Maia, Barrozo, Petrucio
Published in Journal of magnetism and magnetic materials (15.03.2022)
Published in Journal of magnetism and magnetic materials (15.03.2022)
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An ontology-driven tool for structured data acquisition using Web forms
Gonçalves, Rafael S, Tu, Samson W, Nyulas, Csongor I, Tierney, Michael J, Musen, Mark A
Published in Journal of biomedical semantics (01.08.2017)
Published in Journal of biomedical semantics (01.08.2017)
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Tunable Surface Plasmon-Polaritons Interaction in All-Metal Pyramidal Metasurfaces: Unveiling Principles and Significance for Biosensing Applications
Marques, Talles E. M., Isayama, Yuri H., Teixeira, Felipe M. F., Santana, Fabiano C., Gonçalves, Rafael S., Rocha, Aline, Dias, Bruna P., Andrade, Lidia M., Martins, Estefânia M. N., Nagem, Ronaldo A. P., Furtado, Clascidia A., Balanta, Miguel A. G., Mejía-Salazar, Jorge Ricardo, Guimarães, Paulo S. S., Rodrigues, Wagner N., Ramirez, Jhonattan C.
Published in ACS applied optical materials (26.07.2024)
Published in ACS applied optical materials (26.07.2024)
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Bioportainer Workbench: a versatile and user-friendly system that integrates implementation, management, and use of bioinformatics resources in Docker environments
Menegidio, Fabiano B, Aciole Barbosa, David, Gonçalves, Rafael Dos S, Nishime, Marcio M, Jabes, Daniela L, Costa de Oliveira, Regina, Nunes, Luiz R
Published in Gigascience (01.04.2019)
Published in Gigascience (01.04.2019)
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The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments
Gonçalves, Rafael S, O'Connor, Martin J, Martínez-Romero, Marcos, Egyedi, Attila L, Willrett, Debra, Graybeal, John, Musen, Mark A
Published in The semantic Web--ISWC ... : ... International Semantic Web Conference ... proceedings. International Semantic Web Conference (01.01.2017)
Published in The semantic Web--ISWC ... : ... International Semantic Web Conference ... proceedings. International Semantic Web Conference (01.01.2017)
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Journal Article
Visualising the effects of ontology changes and studying their understanding with ChImp
Pernisch, Romana, Dell’Aglio, Daniele, Serbak, Mirko, Gonçalves, Rafael S., Bernstein, Abraham
Published in Web semantics (01.10.2022)
Published in Web semantics (01.10.2022)
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Journal Article
Analysing the evolution of the NCI Thesaurus
Goncalves, R. S., Parsia, B., Sattler, U.
Published in 2011 24th International Symposium on Computer-Based Medical Systems (CBMS) (01.06.2011)
Published in 2011 24th International Symposium on Computer-Based Medical Systems (CBMS) (01.06.2011)
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Conference Proceeding
The text2term tool to map free-text descriptions of biomedical terms to ontologies
Gonçalves, Rafael S, Payne, Jason, Tan, Amelia, Benitez, Carmen, Haddock, Jamie, Gentleman, Robert
Year of Publication 02.07.2024
Year of Publication 02.07.2024
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Implications of mappings between ICD clinical diagnosis codes and Human Phenotype Ontology terms
Tan, Amelia LM, Gonçalves, Rafael S, Yuan, William, Brat, Gabriel A, EHR, The Consortium for Clinical Characterization of COVID-19 by, Gentleman, Robert, Kohane, Isaac S
Year of Publication 11.07.2024
Year of Publication 11.07.2024
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Aligning Biomedical Metadata with Ontologies Using Clustering and Embeddings
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