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Schapiro, Denis, Sokolov, Artem, Yapp, Clarence, Chen, Yu-An, Muhlich, Jeremy L., Hess, Joshua, Creason, Allison L., Nirmal, Ajit J., Baker, Gregory J., Nariya, Maulik K., Lin, Jia-Ren, Maliga, Zoltan, Jacobson, Connor A., Hodgman, Matthew W., Ruokonen, Juha, Farhi, Samouil L., Abbondanza, Domenic, McKinley, Eliot T., Persson, Daniel, Betts, Courtney, Sivagnanam, Shamilene, Regev, Aviv, Goecks, Jeremy, Coffey, Robert J., Coussens, Lisa M., Santagata, Sandro, Sorger, Peter K.
Published in Nature methods (01.03.2022)
Published in Nature methods (01.03.2022)
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Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine
Gu, Qiang, Kumar, Anup, Bray, Simon, Creason, Allison, Khanteymoori, Alireza, Jalili, Vahid, Grüning, Björn, Goecks, Jeremy
Published in PLoS computational biology (01.06.2021)
Published in PLoS computational biology (01.06.2021)
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Integrative approach reveals composition of endoparasitoid wasp venoms
Goecks, Jeremy, Mortimer, Nathan T, Mobley, James A, Bowersock, Gregory J, Taylor, James, Schlenke, Todd A
Published in PloS one (23.05.2013)
Published in PloS one (23.05.2013)
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Parasitoid wasp venom SERCA regulates Drosophila calcium levels and inhibits cellular immunity
Mortimer, Nathan T., Goecks, Jeremy, Kacsoh, Balint Z., Mobley, James A., Bowersock, Gregory J., Taylor, James, Schlenke, Todd A.
Published in Proceedings of the National Academy of Sciences - PNAS (04.06.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (04.06.2013)
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Multiomics analysis of serial PARP inhibitor treated metastatic TNBC inform on rational combination therapies
Labrie, Marilyne, Li, Allen, Creason, Allison, Betts, Courtney, Keck, Jamie, Johnson, Brett, Sivagnanam, Shamilene, Boniface, Christopher, Ma, Hongli, Blucher, Aurora, Chang, Young Hwan, Chin, Koei, Vuky, Jacqueline, Guimaraes, Alexander R., Downey, Molly, Lim, Jeong Youn, Gao, Lina, Siex, Kiara, Parmar, Swapnil, Kolodzie, Annette, Spellman, Paul T., Goecks, Jeremy, Coussens, Lisa M., Corless, Christopher L., Bergan, Raymond, Gray, Joe W., Mills, Gordon B., Mitri, Zahi I.
Published in NPJ precision oncology (19.10.2021)
Published in NPJ precision oncology (19.10.2021)
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A quick guide for building a successful bioinformatics community
Budd, Aidan, Corpas, Manuel, Brazas, Michelle D, Fuller, Jonathan C, Goecks, Jeremy, Mulder, Nicola J, Michaut, Magali, Ouellette, B F Francis, Pawlik, Aleksandra, Blomberg, Niklas
Published in PLoS computational biology (01.02.2015)
Published in PLoS computational biology (01.02.2015)
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Dietary and flight energetic adaptations in a salivary gland transcriptome of an insectivorous bat
Phillips, Carleton J, Phillips, Caleb D, Goecks, Jeremy, Lessa, Enrique P, Sotero-Caio, Cibele G, Tandler, Bernard, Gannon, Michael R, Baker, Robert J
Published in PloS one (14.01.2014)
Published in PloS one (14.01.2014)
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update
Jalili, Vahid, Afgan, Enis, Gu, Qiang, Clements, Dave, Blankenberg, Daniel, Goecks, Jeremy, Taylor, James, Nekrutenko, Anton
Published in Nucleic acids research (02.07.2020)
Published in Nucleic acids research (02.07.2020)
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
Afgan, Enis, Baker, Dannon, Batut, Bérénice, van den Beek, Marius, Bouvier, Dave, Čech, Martin, Chilton, John, Clements, Dave, Coraor, Nate, Grüning, Björn A, Guerler, Aysam, Hillman-Jackson, Jennifer, Hiltemann, Saskia, Jalili, Vahid, Rasche, Helena, Soranzo, Nicola, Goecks, Jeremy, Taylor, James, Nekrutenko, Anton, Blankenberg, Daniel
Published in Nucleic acids research (02.07.2018)
Published in Nucleic acids research (02.07.2018)
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Journal Article
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
Afgan, Enis, Baker, Dannon, van den Beek, Marius, Blankenberg, Daniel, Bouvier, Dave, Čech, Martin, Chilton, John, Clements, Dave, Coraor, Nate, Eberhard, Carl, Grüning, Björn, Guerler, Aysam, Hillman-Jackson, Jennifer, Von Kuster, Greg, Rasche, Eric, Soranzo, Nicola, Turaga, Nitesh, Taylor, James, Nekrutenko, Anton, Goecks, Jeremy
Published in Nucleic acids research (08.07.2016)
Published in Nucleic acids research (08.07.2016)
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Journal Article
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
Afgan, Enis, Nekrutenko, Anton, Grüning, Bjórn A, Blankenberg, Daniel, Goecks, Jeremy, Schatz, Michael C, Ostrovsky, Alexander E, Mahmoud, Alexandru, Lonie, Andrew J, Syme, Anna, Fouilloux, Anne, Bretaudeau, Anthony, Kumar, Anup, Eschenlauer, Arthur C, DeSanto, Assunta D, Guerler, Aysam, Serrano-Solano, Beatriz, Batut, Bérénice, Grüning, Björn A, Langhorst, Bradley W, Carr, Bridget, Raubenolt, Bryan A, Hyde, Cameron J, Bromhead, Catherine J, Barnett, Christopher B, Royaux, Coline, Gallardo, Cristóbal, Fornika, Daniel J, Baker, Dannon, Bouvier, Dave, Clements, Dave, de Lima Morais, David A, Tabernero, David Lopez, Lariviere, Delphine, Nasr, Engy, Zambelli, Federico, Heyl, Florian, Psomopoulos, Fotis, Coppens, Frederik, Price, Gareth R, Cuccuru, Gianmauro, Corguillé, Gildas Le, Von Kuster, Greg, Akbulut, Gulsum Gudukbay, Rasche, Helena, Hotz, Hans-Rudolf, Eguinoa, Ignacio, Makunin, Igor, Ranawaka, Isuru J, Taylor, James P, Joshi, Jayadev, Hillman-Jackson, Jennifer, Chilton, John M, Kamali, Kaivan, Suderman, Keith, Poterlowicz, Krzysztof, Yvan, Le Bras, Lopez-Delisle, Lucille, Sargent, Luke, Bassetti, Madeline E, Tangaro, Marco Antonio, van den Beek, Marius, Čech, Martin, Bernt, Matthias, Fahrner, Matthias, Tekman, Mehmet, Föll, Melanie C, Crusoe, Michael R, Roncoroni, Miguel, Kucher, Natalie, Coraor, Nate, Stoler, Nicholas, Rhodes, Nick, Soranzo, Nicola, Pinter, Niko, Goonasekera, Nuwan A, Moreno, Pablo A, Videm, Pavankumar, Melanie, Petera, Mandreoli, Pietro, Jagtap, Pratik D, Gu, Qiang, Weber, Ralf J M, Lazarus, Ross, Vorderman, Ruben H P, Hiltemann, Saskia, Golitsynskiy, Sergey, Garg, Shilpa, Bray, Simon A, Gladman, Simon L, Leo, Simone, Mehta, Subina P, Griffin, Timothy J, Jalili, Vahid, Yves, Vandenbrouck, Wen, Victor, Nagampalli, Vijay K, Bacon, Wendi A, de Koning, Willem, Maier, Wolfgang
Published in Nucleic acids research (05.07.2022)
Published in Nucleic acids research (05.07.2022)
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Next Generation Indexing for Genomic Intervals
Jalili, Vahid, Matteucci, Matteo, Goecks, Jeremy, Deldjoo, Yashar, Ceri, Stefano
Published in IEEE transactions on knowledge and data engineering (01.10.2019)
Published in IEEE transactions on knowledge and data engineering (01.10.2019)
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Journal Article
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update
Jalili, Vahid, Afgan, Enis, Gu, Qiang, Clements, Dave, Blankenberg, Daniel, Goecks, Jeremy, Taylor, James, Nekrutenko, Anton
Published in Nucleic acids research (20.08.2020)
Published in Nucleic acids research (20.08.2020)
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Biology Needs Evolutionary Software Tools: Let's Build Them Right
Nekrutenko, Anton, Team, Galaxy, Goecks, Jeremy, Taylor, James, Blankenberg, Daniel
Published in Molecular biology and evolution (01.06.2018)
Published in Molecular biology and evolution (01.06.2018)
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