UCSF ChimeraX: Tools for structure building and analysis
Meng, Elaine C., Goddard, Thomas D., Pettersen, Eric F., Couch, Greg S., Pearson, Zach J., Morris, John H., Ferrin, Thomas E.
Published in Protein science (01.11.2023)
Published in Protein science (01.11.2023)
Get full text
Journal Article
UCSF ChimeraX: Structure visualization for researchers, educators, and developers
Pettersen, Eric F., Goddard, Thomas D., Huang, Conrad C., Meng, Elaine C., Couch, Gregory S., Croll, Tristan I., Morris, John H., Ferrin, Thomas E.
Published in Protein science (01.01.2021)
Published in Protein science (01.01.2021)
Get full text
Journal Article
UCSF ChimeraX: Meeting modern challenges in visualization and analysis
Goddard, Thomas D., Huang, Conrad C., Meng, Elaine C., Pettersen, Eric F., Couch, Gregory S., Morris, John H., Ferrin, Thomas E.
Published in Protein science (01.01.2018)
Published in Protein science (01.01.2018)
Get full text
Journal Article
Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions
Pintilie, Grigore D., Zhang, Junjie, Goddard, Thomas D., Chiu, Wah, Gossard, David C.
Published in Journal of structural biology (01.06.2010)
Published in Journal of structural biology (01.06.2010)
Get full text
Journal Article
Actin-based protrusions of migrating neutrophils are intrinsically lamellar and facilitate direction changes
Fritz-Laylin, Lillian K, Riel-Mehan, Megan, Chen, Bi-Chang, Lord, Samuel J, Goddard, Thomas D, Ferrin, Thomas E, Nicholson-Dykstra, Susan M, Higgs, Henry, Johnson, Graham T, Betzig, Eric, Mullins, R Dyche
Published in eLife (26.09.2017)
Published in eLife (26.09.2017)
Get full text
Journal Article
Multidomain Assembler (MDA) Generates Models of Large Multidomain Proteins
Hertig, Samuel, Goddard, Thomas D., Johnson, Graham T., Ferrin, Thomas E.
Published in Biophysical journal (05.05.2015)
Published in Biophysical journal (05.05.2015)
Get full text
Journal Article
UCSF Chimera, MODELLER, and IMP: An integrated modeling system
Yang, Zheng, Lasker, Keren, Schneidman-Duhovny, Dina, Webb, Ben, Huang, Conrad C., Pettersen, Eric F., Goddard, Thomas D., Meng, Elaine C., Sali, Andrej, Ferrin, Thomas E.
Published in Journal of structural biology (01.09.2012)
Published in Journal of structural biology (01.09.2012)
Get full text
Journal Article
Visualizing density maps with UCSF Chimera
Goddard, Thomas D., Huang, Conrad C., Ferrin, Thomas E.
Published in Journal of structural biology (2007)
Published in Journal of structural biology (2007)
Get full text
Journal Article
Molecular Visualization on the Holodeck
Goddard, Thomas D., Brilliant, Alan A., Skillman, Thomas L., Vergenz, Steven, Tyrwhitt-Drake, James, Meng, Elaine C., Ferrin, Thomas E.
Published in Journal of molecular biology (19.10.2018)
Published in Journal of molecular biology (19.10.2018)
Get full text
Journal Article
Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures
Berman, Helen M., Adams, Paul D., Bonvin, Alexandre A., Burley, Stephen K., Carragher, Bridget, Chiu, Wah, DiMaio, Frank, Ferrin, Thomas E., Gabanyi, Margaret J., Goddard, Thomas D., Griffin, Patrick R., Haas, Juergen, Hanke, Christian A., Hoch, Jeffrey C., Hummer, Gerhard, Kurisu, Genji, Lawson, Catherine L., Leitner, Alexander, Markley, John L., Meiler, Jens, Montelione, Gaetano T., Phillips, George N., Prisner, Thomas, Rappsilber, Juri, Schriemer, David C., Schwede, Torsten, Seidel, Claus A.M., Strutzenberg, Timothy S., Svergun, Dmitri I., Tajkhorshid, Emad, Trewhella, Jill, Vallat, Brinda, Velankar, Sameer, Vuister, Geerten W., Webb, Benjamin, Westbrook, John D., White, Kate L., Sali, Andrej
Published in Structure (London) (03.12.2019)
Published in Structure (London) (03.12.2019)
Get full text
Journal Article
IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods
Vallat, Brinda, Webb, Benjamin M., Westbrook, John D., Goddard, Thomas D., Hanke, Christian A., Graziadei, Andrea, Peisach, Ezra, Zalevsky, Arthur, Sagendorf, Jared, Tangmunarunkit, Hongsuda, Voinea, Serban, Sekharan, Monica, Yu, Jian, Bonvin, Alexander A.M.J.J., DiMaio, Frank, Hummer, Gerhard, Meiler, Jens, Tajkhorshid, Emad, Ferrin, Thomas E., Lawson, Catherine L., Leitner, Alexander, Rappsilber, Juri, Seidel, Claus A.M., Jeffries, Cy M., Burley, Stephen K., Hoch, Jeffrey C., Kurisu, Genji, Morris, Kyle, Patwardhan, Ardan, Velankar, Sameer, Schwede, Torsten, Trewhella, Jill, Kesselman, Carl, Berman, Helen M., Sali, Andrej
Published in Journal of molecular biology (01.09.2024)
Published in Journal of molecular biology (01.09.2024)
Get full text
Journal Article
Software Extensions to UCSF Chimera for Interactive Visualization of Large Molecular Assemblies
Goddard, Thomas D., Huang, Conrad C., Ferrin, Thomas E.
Published in Structure (London) (01.03.2005)
Published in Structure (London) (01.03.2005)
Get full text
Journal Article
Long-range interphase chromosome organization in Drosophila: a study using color barcoded fluorescence in situ hybridization and structural clustering analysis
Lowenstein, Michael G, Goddard, Thomas D, Sedat, John W
Published in Molecular biology of the cell (01.12.2004)
Published in Molecular biology of the cell (01.12.2004)
Get full text
Journal Article
Long-Range Interphase Chromosome Organization in Drosophila: A Study Using Color Barcoded Fluorescence In Situ Hybridization and Structural Clustering AnalysisD
Lowenstein, Michael G., Goddard, Thomas D., Sedat, John W.
Published in Molecular biology of the cell (01.12.2004)
Published in Molecular biology of the cell (01.12.2004)
Get full text
Journal Article
ER-GUARD: an evolutionarily conserved antioxidant defense system at ER membranes
Ji, Zhijian, Pandey, Taruna, de Belly, Henry, Wang, Bingying, Weiner, Orion D, Tang, Yao, Guang, Shouhong, Goddard, Thomas D, Ma, Dengke K
Published in bioRxiv (20.06.2024)
Published in bioRxiv (20.06.2024)
Get full text
Journal Article
Phenotypic landscape of a fungal meningitis pathogen reveals its unique biology
Boucher, Michael, Banerjee, Sanjita, Joshi, Meenakshi, Wei, Angela, Huang, Manning, Lei, Susan, Ciranni, Massimiliano, Condon, Andrew, Langen, Andreas, Goddard, Thomas, Caradonna, Ippolito, Goranov, Alexi, Homer, Christina, Mortensen, Yassaman, Petnic, Sarah, Reilly, Morgann, Xiong, Ying, Susa, Katherine, Pastore, Vito Paolo, Zaro, Balyn, Madhani, Hiten
Published in bioRxiv (29.10.2024)
Published in bioRxiv (29.10.2024)
Get full text
Journal Article
Three-dimensional actin-based protrusions of migrating neutrophils are intrinsically lamellar and facilitate direction changes
Fritz-Laylin, Lillian K, Riel-Mehan, Megan, Bi-Chang, Chen, Lord, Samuel J, Goddard, Thomas D, Ferrin, Thomas E, Johnson, Graham, Betzig, Eric, R Dyche Mullins
Published in bioRxiv (24.03.2017)
Published in bioRxiv (24.03.2017)
Get full text
Paper