PoMeLo: a systematic computational approach to predicting metabolic loss in pathogen genomes
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Published in BMC bioinformatics (30.01.2024)
Published in BMC bioinformatics (30.01.2024)
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Detection of SARS-CoV-2 RNA using RT-LAMP and molecular beacons
Sherrill-Mix, Scott, Hwang, Young, Roche, Aoife M, Glascock, Abigail, Weiss, Susan R, Li, Yize, Haddad, Leila, Deraska, Peter, Monahan, Caitlin, Kromer, Andrew, Graham-Wooten, Jevon, Taylor, Louis J, Abella, Benjamin S, Ganguly, Arupa, Collman, Ronald G, Van Duyne, Gregory D, Bushman, Frederic D
Published in Genome Biology (03.06.2021)
Published in Genome Biology (03.06.2021)
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An emerging mycoplasma associated with trichomoniasis, vaginal infection and disease
Fettweis, Jennifer M, Serrano, Myrna G, Huang, Bernice, Brooks, J Paul, Glascock, Abigail L, Sheth, Nihar U, Strauss, 3rd, Jerome F, Jefferson, Kimberly K, Buck, Gregory A
Published in PloS one (22.10.2014)
Published in PloS one (22.10.2014)
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Signatures of COVID-19 Severity and Immune Response in the Respiratory Tract Microbiome
Merenstein, Carter, Liang, Guanxiang, Whiteside, Samantha A, Cobián-Güemes, Ana G, Merlino, Madeline S, Taylor, Louis J, Glascock, Abigail, Bittinger, Kyle, Tanes, Ceylan, Graham-Wooten, Jevon, Khatib, Layla A, Fitzgerald, Ayannah S, Reddy, Shantan, Baxter, Amy E, Giles, Josephine R, Oldridge, Derek A, Meyer, Nuala J, Wherry, E John, McGinniss, John E, Bushman, Frederic D, Collman, Ronald G
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Published in mBio (31.08.2021)
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The antibiotic resistance reservoir of the lung microbiome expands with age in a population of critically ill patients
Chu, Victoria T., Tsitsiklis, Alexandra, Mick, Eran, Ambroggio, Lilliam, Kalantar, Katrina L., Glascock, Abigail, Osborne, Christina M., Wagner, Brandie D., Matthay, Michael A., DeRisi, Joseph L., Calfee, Carolyn S., Mourani, Peter M., Langelier, Charles R.
Published in Nature communications (02.01.2024)
Published in Nature communications (02.01.2024)
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Comparison of Lactobacillus crispatus isolates from Lactobacillus-dominated vaginal microbiomes with isolates from microbiomes containing bacterial vaginosis-associated bacteria
Abdelmaksoud, Abdallah A, Koparde, Vishal N, Sheth, Nihar U, Serrano, Myrna G, Glascock, Abigail L, Fettweis, Jennifer M, Strauss, Jerome F, Buck, Gregory A, Jefferson, Kimberly K
Published in Microbiology (Society for General Microbiology) (01.03.2016)
Published in Microbiology (Society for General Microbiology) (01.03.2016)
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Racioethnic diversity in the dynamics of the vaginal microbiome during pregnancy
Serrano, Myrna G., Parikh, Hardik I., Brooks, J. Paul, Edwards, David J., Arodz, Tom J., Edupuganti, Laahirie, Huang, Bernice, Girerd, Philippe H., Bokhari, Yahya A., Bradley, Steven P., Brooks, Jamie L., Dickinson, Molly R., Drake, Jennifer I., Duckworth, Robert A., Fong, Stephen S., Glascock, Abigail L., Jean, Sophonie, Jimenez, Nicole R., Khoury, Joseph, Koparde, Vishal N., Lara, Ana M., Lee, Vladimir, Matveyev, Andrey V., Milton, Sarah H., Mistry, Shreni D., Rozycki, Sarah K., Sheth, Nihar U., Smirnova, Ekaterina, Vivadelli, Stephany C., Wijesooriya, N. Romesh, Xu, Jie, Xu, Ping, Chaffin, Donald O., Sexton, Amber L., Gravett, Michael G., Rubens, Craig E., Hendricks-Muñoz, Karen D., Jefferson, Kimberly K., Strauss, Jerome F., Fettweis, Jennifer M., Buck, Gregory A.
Published in Nature medicine (01.06.2019)
Published in Nature medicine (01.06.2019)
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SARS-CoV-2 Genomic Variation in Space and Time in Hospitalized Patients in Philadelphia
Everett, John, Hokama, Pascha, Roche, Aoife M, Reddy, Shantan, Hwang, Young, Kessler, Lyanna, Glascock, Abigail, Li, Yize, Whelan, Jillian N, Weiss, Susan R, Sherrill-Mix, Scott, McCormick, Kevin, Whiteside, Samantha A, Graham-Wooten, Jevon, Khatib, Layla A, Fitzgerald, Ayannah S, Collman, Ronald G, Bushman, Frederic
Published in mBio (19.01.2021)
Published in mBio (19.01.2021)
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Correction for Merenstein et al., "Signatures of COVID-19 Severity and Immune Response in the Respiratory Tract Microbiome"
Merenstein, Carter, Liang, Guanxiang, Whiteside, Samantha A, Cobián-Güemes, Ana G, Merlino, Madeline S, Taylor, Louis J, Glascock, Abigail, Bittinger, Kyle, Tanes, Ceylan, Graham-Wooten, Jevon, Khatib, Layla A, Fitzgerald, Ayannah S, Reddy, Shantan, Baxter, Amy E, Giles, Josephine R, Oldridge, Derek A, Meyer, Nuala J, Wherry, E John, McGinniss, John E, Bushman, Frederic D, Collman, Ronald G
Published in mBio (26.10.2022)
Published in mBio (26.10.2022)
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SARS-CoV-2 Variants Associated with Vaccine Breakthrough in the Delaware Valley through Summer 2021
Marques, Andrew D, Sherrill-Mix, Scott, Everett, John K, Reddy, Shantan, Hokama, Pascha, Roche, Aoife M, Hwang, Young, Glascock, Abigail, Whiteside, Samantha A, Graham-Wooten, Jevon, Khatib, Layla A, Fitzgerald, Ayannah S, Moustafa, Ahmed M, Bianco, Colleen, Rajagopal, Swetha, Helton, Jenna, Deming, Regan, Denu, Lidiya, Ahmed, Azad, Kitt, Eimear, Coffin, Susan E, Newbern, Claire, Mell, Josh Chang, Planet, Paul J, Badjatia, Nitika, Richards, Bonnie, Wang, Zi-Xuan, Cannuscio, Carolyn C, Strelau, Katherine M, Jaskowiak-Barr, Anne, Cressman, Leigh, Loughrey, Sean, Ganguly, Arupa, Feldman, Michael D, Collman, Ronald G, Rodino, Kyle G, Kelly, Brendan J, Bushman, Frederic D
Published in mBio (22.02.2021)
Published in mBio (22.02.2021)
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Unique roles of vaginal Megasphaera phylotypes in reproductive health
Glascock, Abigail L, Jimenez, Nicole R, Boundy, Sam, Koparde, Vishal N, Brooks, J Paul, Edwards, David J, Strauss Iii, Jerome F, Jefferson, Kimberly K, Serrano, Myrna G, Buck, Gregory A, Fettweis, Jennifer M
Published in Microbial genomics (01.12.2021)
Published in Microbial genomics (01.12.2021)
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Considerations for the Safe Operation of Schools During the Coronavirus Pandemic
Lordan, Ronan, Prior, Samantha, Hennessy, Elizabeth, Naik, Amruta, Ghosh, Soumita, Paschos, Georgios K, Skarke, Carsten, Barekat, Kayla, Hollingsworth, Taylor, Juska, Sydney, Mazaleuskaya, Liudmila L, Teegarden, Sarah, Glascock, Abigail L, Anderson, Sean, Meng, Hu, Tang, Soon-Yew, Weljie, Aalim, Bottalico, Lisa, Ricciotti, Emanuela, Cherfane, Perla, Mrcela, Antonijo, Grant, Gregory, Poole, Kristen, Mayer, Natalie, Waring, Michael, Adang, Laura, Becker, Julie, Fries, Susanne, FitzGerald, Garret A, Grosser, Tilo
Published in Frontiers in public health (16.12.2021)
Published in Frontiers in public health (16.12.2021)
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Building up a genomic surveillance platform for SARS-CoV-2 in the middle of a pandemic: a true North–South collaboration
Khan, Waqasuddin, Kabir, Furqan, Kanwar, Samiah, Aziz, Fatima, Muneer, Sahrish, Kalam, Adil, Rajab Ali, Mehdia Nadeem, Ansari, Nadia, Vanaerschot, Manu, Ahyong, Vida, Fahsbender, Liz, Kalantar, Katrina, Black, Allison, Glascock, Abigail, Gil, Juliana, Ayscue, Patrick, Tato, Cristina, Jehan, Fyezah, Nisar, Imran
Published in BMJ global health (01.11.2023)
Published in BMJ global health (01.11.2023)
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Anti-nucleocapsid antibody levels and pulmonary comorbid conditions are linked to post-COVID-19 syndrome
Jia, Xiaolin, Cao, Shu, Lee, Alexandra S, Manohar, Monali, Sindher, Sayantani B, Ahuja, Neera, Artandi, Maja, Blish, Catherine A, Blomkalns, Andra L, Chang, Iris, Collins, William J, Desai, Manisha, Din, Hena Naz, Do, Evan, Fernandes, Andrea, Geng, Linda N, Rosenberg-Hasson, Yael, Mahoney, Megan Ruth, Glascock, Abigail L, Chan, Lienna Y, Fong, Sharon Y, Phelps, Maira, Raeber, Olivia, Purington, Natasha, Röltgen, Katharina, Rogers, Angela J, Snow, Theo, Wang, Taia T, Solis, Daniel, Vaughan, Laura, Verghese, Michelle, Maecker, Holden, Wittman, Richard, Puri, Rajan, Kistler, Amy, Yang, Samuel, Boyd, Scott D, Pinsky, Benjamin A, Chinthrajah, Sharon, Nadeau, Kari C
Published in JCI insight (08.07.2022)
Published in JCI insight (08.07.2022)
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The vaginal microbiome and preterm birth
Fettweis, Jennifer M., Serrano, Myrna G., Brooks, J. Paul, Edwards, David J., Girerd, Philippe H., Parikh, Hardik I., Huang, Bernice, Arodz, Tom J., Edupuganti, Laahirie, Glascock, Abigail L., Xu, Jie, Jimenez, Nicole R., Vivadelli, Stephany C., Fong, Stephen S., Sheth, Nihar U., Jean, Sophonie, Lee, Vladimir, Bokhari, Yahya A., Lara, Ana M., Mistry, Shreni D., Duckworth, Robert A., Bradley, Steven P., Koparde, Vishal N., Orenda, X. Valentine, Milton, Sarah H., Rozycki, Sarah K., Matveyev, Andrey V., Wright, Michelle L., Huzurbazar, Snehalata V., Jackson, Eugenie M., Smirnova, Ekaterina, Korlach, Jonas, Tsai, Yu-Chih, Dickinson, Molly R., Brooks, Jamie L., Drake, Jennifer I., Chaffin, Donald O., Sexton, Amber L., Gravett, Michael G., Rubens, Craig E., Wijesooriya, N. Romesh, Hendricks-Muñoz, Karen D., Jefferson, Kimberly K., Strauss, Jerome F., Buck, Gregory A.
Published in Nature medicine (01.06.2019)
Published in Nature medicine (01.06.2019)
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Impact of doxycycline post-exposure prophylaxis for sexually transmitted infections on the gut microbiome and antimicrobial resistome
Chu, Victoria T, Glascock, Abigail, Donnell, Deborah, Grabow, Cole, Brown, Clare E, Ward, Ryan, Love, Christina, Kalantar, Katrina L, Cohen, Stephanie E, Cannon, Chase, Woodworth, Michael H, Kelley, Colleen F, Celum, Connie, Luetkemeyer, Anne F, Langelier, Charles R
Published in Nature medicine (03.10.2024)
Published in Nature medicine (03.10.2024)
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Microbial dynamics and pulmonary immune responses in COVID-19 secondary bacterial pneumonia
Spottiswoode, Natasha, Tsitsiklis, Alexandra, Chu, Victoria T., Phan, Hoang Van, DeVoe, Catherine, Love, Christina, Ghale, Rajani, Bloomstein, Joshua, Zha, Beth Shoshana, Maguire, Cole P., Glascock, Abigail, Sarma, Aartik, Mourani, Peter M., Kalantar, Katrina L., Detweiler, Angela, Neff, Norma, Haller, Sidney C., DeRisi, Joseph L., Erle, David J., Hendrickson, Carolyn M., Kangelaris, Kirsten N., Krummel, Matthew F., Matthay, Michael A., Woodruff, Prescott G., Calfee, Carolyn S., Langelier, Charles R.
Published in Nature communications (29.10.2024)
Published in Nature communications (29.10.2024)
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Femtomolar SARS-CoV-2 Antigen Detection Using the Microbubbling Digital Assay with Smartphone Readout Enables Antigen Burden Quantitation and Tracking
Chen, Hui, Li, Zhao, Feng, Sheng, Richard-Greenblatt, Melissa, Hutson, Emily, Andrianus, Stefen, Glaser, Laurel J, Rodino, Kyle G, Qian, Jianing, Jayaraman, Dinesh, Collman, Ronald G, Glascock, Abigail, Bushman, Frederic D, Lee, Jae Seung, Cherry, Sara, Fausto, Alejandra, Weiss, Susan R, Koo, Hyun, Corby, Patricia M, Oceguera, Alfonso, O’Doherty, Una, Garfall, Alfred L, Vogl, Dan T, Stadtmauer, Edward A, Wang, Ping
Published in Clinical Chemistry (01.01.2022)
Published in Clinical Chemistry (01.01.2022)
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Doxycycline post-exposure prophylaxis for sexually transmitted infections impacts the gut antimicrobial resistome
Langelier, Charles, Chu, Victoria, Glascock, Abigail, Donnell, Deborah, Grabow, Cole, Brown, Clare, Ward, Ryan, Love, Christina, Kalantar, Katrina, Cohen, Stephanie, Cannon, Chase, Woodworth, Michael, Kelley, Colleen, Celum, Connie, Luetkemeyer, Anne
Published in Research square (17.04.2024)
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Published in Research square (17.04.2024)
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