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Fenn, Matthew A., Giovannoni, James J.
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Published in The Plant journal : for cell and molecular biology (01.01.2021)
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The Epigenome and Transcriptional Dynamics of Fruit Ripening
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SlERF.F12 modulates the transition to ripening in tomato fruit by recruiting the co-repressor TOPLESS and histone deacetylases to repress key ripening genes
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iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases
Zheng, Yi, Jiao, Chen, Sun, Honghe, Rosli, Hernan G., Pombo, Marina A., Zhang, Peifen, Banf, Michael, Dai, Xinbin, Martin, Gregory B., Giovannoni, James J., Zhao, Patrick X., Rhee, Seung Y., Fei, Zhangjun
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Genome-wide association analysis identifies a natural variation in basic helix-loop-helix transcription factor regulating ascorbate biosynthesis via D-mannose/L-galactose pathway in tomato
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Published in PLoS genetics (08.05.2019)
Published in PLoS genetics (08.05.2019)
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The Tomato MADS-Box Transcription Factor RIPENING INHIBITOR Interacts with Promoters Involved in Numerous Ripening Processes in a COLORLESS NONRIPENING-Dependent Manner
Martel, Catherine, Vrebalov, Julia, Tafelmeyer, Petra, Giovannoni, James J.
Published in Plant physiology (Bethesda) (01.11.2011)
Published in Plant physiology (Bethesda) (01.11.2011)
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Molecular and genetic regulation of fruit ripening
Gapper, Nigel E., McQuinn, Ryan P., Giovannoni, James J.
Published in Plant molecular biology (01.08.2013)
Published in Plant molecular biology (01.08.2013)
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An InDel in the Promoter of Al-ACTIVATED MALATE TRANSPORTER9 Selected during Tomato Domestication Determines Fruit Malate Contents and Aluminum Tolerance
Ye, Jie, Wang, Xin, Hu, Tixu, Zhang, Fengxia, Wang, Bing, Li, Changxin, Yang, Tianxia, Li, Hanxia, Lu, Yongen, Giovannoni, James J., Zhang, Yuyang, Ye, Zhibiao
Published in The Plant cell (01.09.2017)
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The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor
Gao, Lei, Gonda, Itay, Sun, Honghe, Ma, Qiyue, Bao, Kan, Tieman, Denise M., Burzynski-Chang, Elizabeth A., Fish, Tara L., Stromberg, Kaitlin A., Sacks, Gavin L., Thannhauser, Theodore W., Foolad, Majid R., Diez, Maria Jose, Blanca, Jose, Canizares, Joaquin, Xu, Yimin, van der Knaap, Esther, Huang, Sanwen, Klee, Harry J., Giovannoni, James J., Fei, Zhangjun
Published in Nature genetics (01.06.2019)
Published in Nature genetics (01.06.2019)
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Chilling-induced tomato flavor loss is associated with altered volatile synthesis and transient changes in DNA methylation
Zhang, Bo, Tieman, Denise M., Jiao, Chen, Xu, Yimin, Chen, Kunsong, Fei, Zhangjun, Giovannoni, James J., Klee, Harry J.
Published in Proceedings of the National Academy of Sciences - PNAS (01.11.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (01.11.2016)
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Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening
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Banana MaMADS Transcription Factors Are Necessary for Fruit Ripening and Molecular Tools to Promote Shelf-Life and Food Security
Elitzur, Tomer, Yakir, Esther, Quansah, Lydia, Zhangjun, Fei, Vrebalov, Julia, Khayat, Eli, Giovannoni, James J., Friedman, Haya
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High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening
Shinozaki, Yoshihito, Nicolas, Philippe, Fernandez-Pozo, Noe, Ma, Qiyue, Evanich, Daniel J., Shi, Yanna, Xu, Yimin, Zheng, Yi, Snyder, Stephen I., Martin, Laetitia B. B., Ruiz-May, Eliel, Thannhauser, Theodore W., Chen, Kunsong, Domozych, David S., Catalá, Carmen, Fei, Zhangjun, Mueller, Lukas A., Giovannoni, James J., Rose, Jocelyn K. C.
Published in Nature communications (25.01.2018)
Published in Nature communications (25.01.2018)
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Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding
Wang, Xin, Gao, Lei, Jiao, Chen, Stravoravdis, Stefanos, Hosmani, Prashant S., Saha, Surya, Zhang, Jing, Mainiero, Samantha, Strickler, Susan R., Catala, Carmen, Martin, Gregory B., Mueller, Lukas A., Vrebalov, Julia, Giovannoni, James J., Wu, Shan, Fei, Zhangjun
Published in Nature communications (16.11.2020)
Published in Nature communications (16.11.2020)
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The NAC transcription factor FaRIF controls fruit ripening in strawberry
Martín-Pizarro, Carmen, Vallarino, José G, Osorio, Sonia, Meco, Victoriano, Urrutia, María, Pillet, Jeremy, Casañal, Ana, Merchante, Catharina, Amaya, Iraida, Willmitzer, Lothar, Fernie, Alisdair R, Giovannoni, James J, Botella, Miguel A, Valpuesta, Victoriano, Posé, David
Published in The Plant cell (02.07.2021)
Published in The Plant cell (02.07.2021)
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Integrative Comparative Analyses of Transcript and Metabolite Profiles from Pepper and Tomato Ripening and Development Stages Uncovers Species-Specific Patterns of Network Regulatory Behavior
Osorio, Sonia, Alba, Rob, Nikoloski, Zoran, Kochevenko, Andrej, Fernie, Alisdair R., Giovannoni, James J.
Published in Plant physiology (Bethesda) (01.08.2012)
Published in Plant physiology (Bethesda) (01.08.2012)
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Relationships between genome methylation, levels of non‐coding RNAs, mRNAs and metabolites in ripening tomato fruit
Zuo, Jinhua, Grierson, Donald, Courtney, Lance T., Wang, Yunxiang, Gao, Lipu, Zhao, Xiaoyan, Zhu, Benzhong, Luo, Yunbo, Wang, Qing, Giovannoni, James J.
Published in The Plant journal : for cell and molecular biology (01.08.2020)
Published in The Plant journal : for cell and molecular biology (01.08.2020)
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Genomic analyses provide insights into the history of tomato breeding
Lin, Tao, Zhu, Guangtao, Zhang, Junhong, Xu, Xiangyang, Yu, Qinghui, Zheng, Zheng, Zhang, Zhonghua, Lun, Yaoyao, Li, Shuai, Wang, Xiaoxuan, Huang, Zejun, Li, Junming, Zhang, Chunzhi, Wang, Taotao, Zhang, Yuyang, Wang, Aoxue, Zhang, Yancong, Lin, Kui, Li, Chuanyou, Xiong, Guosheng, Xue, Yongbiao, Mazzucato, Andrea, Causse, Mathilde, Fei, Zhangjun, Giovannoni, James J, Chetelat, Roger T, Zamir, Dani, Städler, Thomas, Li, Jingfu, Ye, Zhibiao, Du, Yongchen, Huang, Sanwen
Published in Nature genetics (01.11.2014)
Published in Nature genetics (01.11.2014)
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