Bidirectional Transcription Arises from Two Distinct Hubs of Transcription Factor Binding and Active Chromatin
Scruggs, Benjamin S., Gilchrist, Daniel A., Nechaev, Sergei, Muse, Ginger W., Burkholder, Adam, Fargo, David C., Adelman, Karen
Published in Molecular cell (18.06.2015)
Published in Molecular cell (18.06.2015)
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Pausing of RNA Polymerase II Disrupts DNA-Specified Nucleosome Organization to Enable Precise Gene Regulation
Gilchrist, Daniel A., Dos Santos, Gilberto, Fargo, David C., Xie, Bin, Gao, Yuan, Li, Leping, Adelman, Karen
Published in Cell (12.11.2010)
Published in Cell (12.11.2010)
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Defining the Status of RNA Polymerase at Promoters
Core, Leighton J., Waterfall, Joshua J., Gilchrist, Daniel A., Fargo, David C., Kwak, Hojoong, Adelman, Karen, Lis, John T.
Published in Cell reports (Cambridge) (25.10.2012)
Published in Cell reports (Cambridge) (25.10.2012)
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Acetylation of RNA Polymerase II Regulates Growth-Factor-Induced Gene Transcription in Mammalian Cells
Schröder, Sebastian, Herker, Eva, Itzen, Friederike, He, Daniel, Thomas, Sean, Gilchrist, Daniel A, Kaehlcke, Katrin, Cho, Sungyoo, Pollard, Katherine S, Capra, John A, Schnölzer, Martina, Cole, Philip A, Geyer, Matthias, Bruneau, Benoit G, Adelman, Karen, Ott, Melanie
Published in Molecular cell (07.11.2013)
Published in Molecular cell (07.11.2013)
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RNA polymerase is poised for activation across the genome
Adelman, Karen, Muse, Ginger W, Gilchrist, Daniel A, Nechaev, Sergei, Shah, Ruchir, Parker, Joel S, Grissom, Sherry F, Zeitlinger, Julia
Published in Nature genetics (01.12.2007)
Published in Nature genetics (01.12.2007)
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NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly
Gilchrist, Daniel A, Nechaev, Sergei, Lee, Chanhyo, Ghosh, Saikat Kumar B, Collins, Jennifer B, Li, Leping, Gilmour, David S, Adelman, Karen
Published in Genes & development (15.07.2008)
Published in Genes & development (15.07.2008)
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Regulating the regulators: the pervasive effects of Pol II pausing on stimulus-responsive gene networks
Gilchrist, Daniel A, Fromm, George, dos Santos, Gilberto, Pham, Linh N, McDaniel, Ivy E, Burkholder, Adam, Fargo, David C, Adelman, Karen
Published in Genes & development (01.05.2012)
Published in Genes & development (01.05.2012)
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Immediate mediators of the inflammatory response are poised for gene activation through RNA polymerase II stalling
Adelman, Karen, Kennedy, Megan A, Nechaev, Sergei, Gilchrist, Daniel A, Muse, Ginger W, Chinenov, Yurii, Rogatsky, Inez
Published in Proceedings of the National Academy of Sciences - PNAS (27.10.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (27.10.2009)
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Journal Article
Stable Pausing by RNA Polymerase II Provides an Opportunity to Target and Integrate Regulatory Signals
Henriques, Telmo, Gilchrist, Daniel A, Nechaev, Sergei, Bern, Michael, Muse, Ginger W, Burkholder, Adam, Fargo, David C, Adelman, Karen
Published in Molecular cell (21.11.2013)
Published in Molecular cell (21.11.2013)
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Using ChIP-chip and ChIP-seq to study the regulation of gene expression: Genome-wide localization studies reveal widespread regulation of transcription elongation
Gilchrist, Daniel A., Fargo, David C., Adelman, Karen
Published in Methods (San Diego, Calif.) (01.08.2009)
Published in Methods (San Diego, Calif.) (01.08.2009)
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Journal Article
Downstream Antisense Transcription Predicts Genomic Features That Define the Specific Chromatin Environment at Mammalian Promoters
Lavender, Christopher A, Cannady, Kimberly R, Hoffman, Jackson A, Trotter, Kevin W, Gilchrist, Daniel A, Bennett, Brian D, Burkholder, Adam B, Burd, Craig J, Fargo, David C, Archer, Trevor K
Published in PLoS genetics (03.08.2016)
Published in PLoS genetics (03.08.2016)
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Journal Article
Upstream Anti-sense Promoters are Hubs of Transcription Factor Binding and Active Histone Modifications
Scruggs, Benjamin S., Gilchrist, Daniel A., Nechaev, Sergei, Muse, Ginger W., Burkholder, Adam, Fargo, David C., Adelman, Karen
Published in Molecular cell (28.05.2015)
Published in Molecular cell (28.05.2015)
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Abstract 2862: MBD3 regulates chromatin accessibility at active promoters
Shimbo, Takashi, Lavender, Christopher, Grimm, Sara A., Doi, Makiko I., Henriques, Telmo, Cannady, Kimberly R., Murphy, Kevin J., Gilchrist, Daniel A., Burkholder, Adam, Hayes, Jeffrey J., Adelman, Karen, Archer, Trevor K., Zaret, Kenneth S., Wade, Paul A.
Published in Cancer research (Chicago, Ill.) (01.08.2015)
Published in Cancer research (Chicago, Ill.) (01.08.2015)
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Journal Article
Immediate mediators of the inflammatory response are poised for rapid gene activation through RNA polymerase stalling
Kennedy, Megan, Nechaev, Sergei, Gilchrist, Daniel A., Muse, Ginger W., Chinenov, Yurii, Adelman, Karen, Rogatsky, Inez
Published in Cytokine (Philadelphia, Pa.) (01.10.2009)
Published in Cytokine (Philadelphia, Pa.) (01.10.2009)
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Journal Article
172 Regulation of TNFα gene transcription at the post-initiation step
Kennedy, Megan A., Nechaev, Sergei, Gilchrist, Daniel A., Muse, Ginger W., Chinenov, Yurii, Adelman, Karen, Rogatsky, Inez
Published in Cytokine (Philadelphia, Pa.) (01.09.2008)
Published in Cytokine (Philadelphia, Pa.) (01.09.2008)
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