Skmer: assembly-free and alignment-free sample identification using genome skims
Sarmashghi, Shahab, Bohmann, Kristine, P Gilbert, M Thomas, Bafna, Vineet, Mirarab, Siavash
Published in Genome Biology (13.02.2019)
Published in Genome Biology (13.02.2019)
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Journal Article
Reconstructing ancient genomes and epigenomes
Orlando, Ludovic, Gilbert, M. Thomas P., Willerslev, Eske
Published in Nature reviews. Genetics (01.07.2015)
Published in Nature reviews. Genetics (01.07.2015)
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Journal Article
Environmental DNA for wildlife biology and biodiversity monitoring
Bohmann, Kristine, Evans, Alice, Gilbert, M. Thomas P., Carvalho, Gary R., Creer, Simon, Knapp, Michael, Yu, Douglas W., de Bruyn, Mark
Published in Trends in ecology & evolution (Amsterdam) (01.06.2014)
Published in Trends in ecology & evolution (Amsterdam) (01.06.2014)
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Journal Article
Monitoring endangered freshwater biodiversity using environmental DNA
THOMSEN, PHILIP FRANCIS, KIELGAST, JOS, IVERSEN, LARS L., WIUF, CARSTEN, RASMUSSEN, MORTEN, GILBERT, M. THOMAS P, ORLANDO, LUDOVIC, WILLERSLEV, ESKE
Published in Molecular ecology (01.06.2012)
Published in Molecular ecology (01.06.2012)
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Journal Article
Multiproxy evidence highlights a complex evolutionary legacy of maize in South America
Kistler, Logan, Maezumi, S Yoshi, Gregorio de Souza, Jonas, Przelomska, Natalia A S, Malaquias Costa, Flaviane, Smith, Oliver, Loiselle, Hope, Ramos-Madrigal, Jazmín, Wales, Nathan, Ribeiro, Eduardo Rivail, Morrison, Ryan R, Grimaldo, Claudia, Prous, Andre P, Arriaza, Bernardo, Gilbert, M Thomas P, de Oliveira Freitas, Fabio, Allaby, Robin G
Published in Science (American Association for the Advancement of Science) (14.12.2018)
Published in Science (American Association for the Advancement of Science) (14.12.2018)
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Journal Article
Using paleo-archives to safeguard biodiversity under climate change
Fordham, Damien A, Jackson, Stephen T, Brown, Stuart C, Huntley, Brian, Brook, Barry W, Dahl-Jensen, Dorthe, Gilbert, M Thomas P, Otto-Bliesner, Bette L, Svensson, Anders, Theodoridis, Spyros, Wilmshurst, Janet M, Buettel, Jessie C, Canteri, Elisabetta, McDowell, Matthew, Orlando, Ludovic, Pilowsky, July A, Rahbek, Carsten, Nogues-Bravo, David
Published in Science (American Association for the Advancement of Science) (28.08.2020)
Published in Science (American Association for the Advancement of Science) (28.08.2020)
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Journal Article
Scrutinizing key steps for reliable metabarcoding of environmental samples
Alberdi, Antton, Aizpurua, Ostaizka, Gilbert, M. Thomas P., Bohmann, Kristine, Mahon, Andrew
Published in Methods in ecology and evolution (01.01.2018)
Published in Methods in ecology and evolution (01.01.2018)
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Journal Article
mapDamage: testing for damage patterns in ancient DNA sequences
Ginolhac, Aurelien, Rasmussen, Morten, Gilbert, M. Thomas P., Willerslev, Eske, Orlando, Ludovic
Published in Bioinformatics (01.08.2011)
Published in Bioinformatics (01.08.2011)
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Journal Article
Investigating the potential use of environmental DNA (eDNA) for genetic monitoring of marine mammals
Foote, Andrew D, Thomsen, Philip Francis, Sveegaard, Signe, Wahlberg, Magnus, Kielgast, Jos, Kyhn, Line A, Salling, Andreas B, Galatius, Anders, Orlando, Ludovic, Gilbert, M Thomas P
Published in PloS one (29.08.2012)
Published in PloS one (29.08.2012)
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Journal Article
The Genomic Footprints of the Fall and Recovery of the Crested Ibis
Feng, Shaohong, Fang, Qi, Barnett, Ross, Li, Cai, Han, Sojung, Kuhlwilm, Martin, Zhou, Long, Pan, Hailin, Deng, Yuan, Chen, Guangji, Gamauf, Anita, Woog, Friederike, Prys-Jones, Robert, Marques-Bonet, Tomas, Gilbert, M. Thomas P., Zhang, Guojie
Published in Current biology (21.01.2019)
Published in Current biology (21.01.2019)
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Journal Article
How ancient RNA survives and what we can learn from it
Friedländer, Marc R., Gilbert, M. Thomas P.
Published in Nature reviews. Molecular cell biology (01.06.2024)
Published in Nature reviews. Molecular cell biology (01.06.2024)
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Journal Article
Ancient and modern environmental DNA
Pedersen, Mikkel Winther, Overballe-Petersen, Søren, Ermini, Luca, Sarkissian, Clio Der, Haile, James, Hellstrom, Micaela, Spens, Johan, Thomsen, Philip Francis, Bohmann, Kristine, Cappellini, Enrico, Schnell, Ida Bærholm, Wales, Nathan A., Carøe, Christian, Campos, Paula F., Schmidt, Astrid M. Z., Gilbert, M. Thomas P., Hansen, Anders J., Orlando, Ludovic, Willerslev, Eske
Published in Philosophical transactions of the Royal Society of London. Series B. Biological sciences (19.01.2015)
Published in Philosophical transactions of the Royal Society of London. Series B. Biological sciences (19.01.2015)
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Journal Article
The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing
Binladen, Jonas, Gilbert, M Thomas P, Bollback, Jonathan P, Panitz, Frank, Bendixen, Christian, Nielsen, Rasmus, Willerslev, Eske
Published in PloS one (14.02.2007)
Published in PloS one (14.02.2007)
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Journal Article
Biological adaptations in the Arctic cervid, the reindeer ( Rangifer tarandus )
Lin, Zeshan, Chen, Lei, Chen, Xianqing, Zhong, Yingbin, Yang, Yue, Xia, Wenhao, Liu, Chang, Zhu, Wenbo, Wang, Han, Yan, Biyao, Yang, Yifeng, Liu, Xing, Sternang Kvie, Kjersti, Røed, Knut Håkon, Wang, Kun, Xiao, Wuhan, Wei, Haijun, Li, Guangyu, Heller, Rasmus, Gilbert, M Thomas P, Qiu, Qiang, Wang, Wen, Li, Zhipeng
Published in Science (American Association for the Advancement of Science) (21.06.2019)
Published in Science (American Association for the Advancement of Science) (21.06.2019)
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Journal Article
Arctic-adapted dogs emerged at the Pleistocene-Holocene transition
Sinding, Mikkel-Holger S, Gopalakrishnan, Shyam, Ramos-Madrigal, Jazmín, de Manuel, Marc, Pitulko, Vladimir V, Kuderna, Lukas, Feuerborn, Tatiana R, Frantz, Laurent A F, Vieira, Filipe G, Niemann, Jonas, Samaniego Castruita, Jose A, Carøe, Christian, Andersen-Ranberg, Emilie U, Jordan, Peter D, Pavlova, Elena Y, Nikolskiy, Pavel A, Kasparov, Aleksei K, Ivanova, Varvara V, Willerslev, Eske, Skoglund, Pontus, Fredholm, Merete, Wennerberg, Sanne Eline, Heide-Jørgensen, Mads Peter, Dietz, Rune, Sonne, Christian, Meldgaard, Morten, Dalén, Love, Larson, Greger, Petersen, Bent, Sicheritz-Pontén, Thomas, Bachmann, Lutz, Wiig, Øystein, Marques-Bonet, Tomas, Hansen, Anders J, Gilbert, M Thomas P
Published in Science (American Association for the Advancement of Science) (26.06.2020)
Published in Science (American Association for the Advancement of Science) (26.06.2020)
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Journal Article
Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity
ANDERSEN, KENNETH, BIRD, KAREN LISE, RASMUSSEN, MORTEN, HAILE, JAMES, BREUNING-MADSEN, HENRIK, KJÆR, KURT H., ORLANDO, LUDOVIC, GILBERT, M. THOMAS P., WILLERSLEV, ESKE
Published in Molecular ecology (01.04.2012)
Published in Molecular ecology (01.04.2012)
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Journal Article
A Common Genetic Origin for Early Farmers from Mediterranean Cardial and Central European LBK Cultures
Olalde, Iñigo, Schroeder, Hannes, Sandoval-Velasco, Marcela, Vinner, Lasse, Lobón, Irene, Ramirez, Oscar, Civit, Sergi, García Borja, Pablo, Salazar-García, Domingo C, Talamo, Sahra, María Fullola, Josep, Xavier Oms, Francesc, Pedro, Mireia, Martínez, Pablo, Sanz, Montserrat, Daura, Joan, Zilhão, João, Marquès-Bonet, Tomàs, Gilbert, M Thomas P, Lalueza-Fox, Carles
Published in Molecular biology and evolution (01.12.2015)
Published in Molecular biology and evolution (01.12.2015)
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Journal Article
Convergent evolution of the genomes of marine mammals
Foote, Andrew D, Liu, Yue, Thomas, Gregg W C, Vinař, Tomáš, Alföldi, Jessica, Deng, Jixin, Dugan, Shannon, van Elk, Cornelis E, Hunter, Margaret E, Joshi, Vandita, Khan, Ziad, Kovar, Christie, Lee, Sandra L, Lindblad-Toh, Kerstin, Mancia, Annalaura, Nielsen, Rasmus, Qin, Xiang, Qu, Jiaxin, Raney, Brian J, Vijay, Nagarjun, Wolf, Jochen B W, Hahn, Matthew W, Muzny, Donna M, Worley, Kim C, Gilbert, M Thomas P, Gibbs, Richard A
Published in Nature genetics (01.03.2015)
Published in Nature genetics (01.03.2015)
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