Dinucleotide Composition in Animal RNA Viruses Is Shaped More by Virus Family than by Host Species
Di Giallonardo, Francesca, Schlub, Timothy E, Shi, Mang, Holmes, Edward C
Published in Journal of virology (15.04.2017)
Published in Journal of virology (15.04.2017)
Get full text
Journal Article
Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations
Giallonardo, Francesca Di, Töpfer, Armin, Rey, Melanie, Prabhakaran, Sandhya, Duport, Yannick, Leemann, Christine, Schmutz, Stefan, Campbell, Nottania K, Joos, Beda, Lecca, Maria Rita, Patrignani, Andrea, Däumer, Martin, Beisel, Christian, Rusert, Peter, Trkola, Alexandra, Günthard, Huldrych F, Roth, Volker, Beerenwinkel, Niko, Metzner, Karin J
Published in Nucleic acids research (18.08.2014)
Published in Nucleic acids research (18.08.2014)
Get full text
Journal Article
RNA-Seq analysis of chikungunya virus infection and identification of granzyme A as a major promoter of arthritic inflammation
Wilson, Jane A C, Prow, Natalie A, Schroder, Wayne A, Ellis, Jonathan J, Cumming, Helen E, Gearing, Linden J, Poo, Yee Suan, Taylor, Adam, Hertzog, Paul J, Di Giallonardo, Francesca, Hueston, Linda, Le Grand, Roger, Tang, Bing, Le, Thuy T, Gardner, Joy, Mahalingam, Suresh, Roques, Pierre, Bird, Phillip I, Suhrbier, Andreas
Published in PLoS pathogens (01.02.2017)
Published in PLoS pathogens (01.02.2017)
Get full text
Journal Article
Conserved epitopes with high HLA-I population coverage are targets of CD8+ T cells associated with high IFN-γ responses against all dengue virus serotypes
Adikari, Thiruni N., Di Giallonardo, Francesca, Leung, Preston, Grifoni, Alba, Sette, Alex, Weiskopf, Daniela, Bull, Rowena A., Luciani, Fabio
Published in Scientific reports (24.11.2020)
Published in Scientific reports (24.11.2020)
Get full text
Journal Article
Low HIV drug resistance prevalence among recently diagnosed HIV‐positive men who have sex with men in a setting of high PrEP use
King, Jonathan M, Giallonardo, Francesca Di, Shaik, Ansari, McGregor, Skye, Yeung, Julie Yuek Kee, Sivaruban, Tharshini, Lee, Frederick J, Cunningham, Philip, Dwyer, Dominic E, Nigro, Steven J, Grulich, Andrew E, Kelleher, Anthony D
Published in Journal of the International AIDS Society (01.07.2024)
Published in Journal of the International AIDS Society (01.07.2024)
Get full text
Journal Article
Subtype‐specific differences in transmission cluster dynamics of HIV‐1 B and CRF01_AE in New South Wales, Australia
Di Giallonardo, Francesca, Pinto, Angie N, Keen, Phillip, Shaik, Ansari, Carrera, Alex, Salem, Hanan, Selvey, Christine, Nigro, Steven J, Fraser, Neil, Price, Karen, Holden, Joanne, Lee, Frederick J, Dwyer, Dominic E, Bavinton, Benjamin R, Geoghegan, Jemma L, Grulich, Andrew E, Kelleher, Anthony D
Published in Journal of the International AIDS Society (01.01.2021)
Published in Journal of the International AIDS Society (01.01.2021)
Get full text
Journal Article
HIV-1 subtype diversity, transmitted drug resistance and phylogenetics in Australia
Pinto, Angie N, Hawke, Karen, Castley, Allison, Chibo, Doris, Giallonardo, Francesca Di, Cooper, Craig, Sawleshwarkar, Shailendra, Kelleher, Anthony, Dwyer, Dominic E
Published in Future virology (01.08.2018)
Published in Future virology (01.08.2018)
Get full text
Journal Article
Tailored enrichment strategy detects low abundant small noncoding RNAs in HIV-1 infected cells
Althaus, Claudia F, Vongrad, Valentina, Niederöst, Barbara, Joos, Beda, Di Giallonardo, Francesca, Rieder, Philip, Pavlovic, Jovan, Trkola, Alexandra, Günthard, Huldrych F, Metzner, Karin J, Fischer, Marek
Published in Retrovirology (29.03.2012)
Published in Retrovirology (29.03.2012)
Get full text
Journal Article
Molecular epidemiology to aid virtual elimination of HIV transmission in Australia
Obeng, Billal M., Kelleher, Anthony D., Di Giallonardo, Francesca
Published in Virus research (01.03.2024)
Published in Virus research (01.03.2024)
Get full text
Journal Article
Infectious disease phylodynamics with occurrence data
Featherstone, Leo A., Di Giallonardo, Francesca, Holmes, Edward C., Vaughan, Timothy G., Duchêne, Sebastián
Published in Methods in ecology and evolution (01.08.2021)
Published in Methods in ecology and evolution (01.08.2021)
Get full text
Journal Article
Reemergence of an atypical bluetongue virus strain in goats, Sardinia, Italy
Spedicato, Massimo, Compagni, Emiliano Delli, Caporale, Marialuigia, Teodori, Liana, Leone, Alessandra, Ancora, Massimo, Mangone, Iolanda, Perletta, Fabrizia, Portanti, Ottavio, Di Giallonardo, Francesca, Bonfini, Barbara, Savini, Giovanni, Lorusso, Alessio
Published in Research in veterinary science (10.12.2022)
Published in Research in veterinary science (10.12.2022)
Get full text
Journal Article
Emergence and Spread of SARS-CoV-2 Lineages B.1.1.7 and P.1 in Italy
Di Giallonardo, Francesca, Puglia, Ilaria, Curini, Valentina, Cammà, Cesare, Mangone, Iolanda, Calistri, Paolo, Cobbin, Joanna C A, Holmes, Edward C, Lorusso, Alessio
Published in Viruses (29.04.2021)
Published in Viruses (29.04.2021)
Get full text
Journal Article
Genomic Epidemiology of the First Wave of SARS-CoV-2 in Italy
Di Giallonardo, Francesca, Duchene, Sebastian, Puglia, Ilaria, Curini, Valentina, Profeta, Francesca, Cammà, Cesare, Marcacci, Maurilia, Calistri, Paolo, Holmes, Edward C, Lorusso, Alessio
Published in Viruses (14.12.2020)
Published in Viruses (14.12.2020)
Get full text
Journal Article
Fluid Spatial Dynamics of West Nile Virus in the United States: Rapid Spread in a Permissive Host Environment
Di Giallonardo, Francesca, Geoghegan, Jemma L, Docherty, Douglas E, McLean, Robert G, Zody, Michael C, Qu, James, Yang, Xiao, Birren, Bruce W, Malboeuf, Christine M, Newman, Ruchi M, Ip, Hon S, Holmes, Edward C
Published in Journal of virology (15.01.2016)
Published in Journal of virology (15.01.2016)
Get full text
Journal Article
Epizootic Haemorrhagic Disease Virus Serotype 8 in Tunisia, 2021
Sghaier, Soufien, Sailleau, Corinne, Marcacci, Maurilia, Thabet, Sarah, Curini, Valentina, Ben Hassine, Thameur, Teodori, Liana, Portanti, Ottavio, Hammami, Salah, Jurisic, Lucija, Spedicato, Massimo, Postic, Lydie, Gazani, Ines, Ben Osman, Raja, Zientara, Stephan, Bréard, Emmanuel, Calistri, Paolo, Richt, Jürgen A, Holmes, Edward C, Savini, Giovanni, Di Giallonardo, Francesca, Lorusso, Alessio
Published in Viruses (01.01.2023)
Published in Viruses (01.01.2023)
Get full text
Journal Article
Virome composition in marine fish revealed by meta-transcriptomics
Geoghegan, Jemma L, Di Giallonardo, Francesca, Wille, Michelle, Ortiz-Baez, Ayda Susana, Costa, Vincenzo A, Ghaly, Timothy, Mifsud, Jonathon C O, Turnbull, Olivia M H, Bellwood, David R, Williamson, Jane E, Holmes, Edward C
Published in Virus evolution (01.01.2021)
Published in Virus evolution (01.01.2021)
Get full text
Journal Article