Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics
Giacomoni, Franck, Le Corguillé, Gildas, Monsoor, Misharl, Landi, Marion, Pericard, Pierre, Pétéra, Mélanie, Duperier, Christophe, Tremblay-Franco, Marie, Martin, Jean-François, Jacob, Daniel, Goulitquer, Sophie, Thévenot, Etienne A, Caron, Christophe
Published in Bioinformatics (01.05.2015)
Published in Bioinformatics (01.05.2015)
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Journal Article
Can we trust untargeted metabolomics? Results of the metabo-ring initiative, a large-scale, multi-instrument inter-laboratory study
Martin, Jean-Charles, Maillot, Matthieu, Mazerolles, Gérard, Verdu, Alexandre, Lyan, Bernard, Migné, Carole, Defoort, Catherine, Canlet, Cecile, Junot, Christophe, Guillou, Claude, Manach, Claudine, Jabob, Daniel, Bouveresse, Delphine Jouan-Rimbaud, Paris, Estelle, Pujos-Guillot, Estelle, Jourdan, Fabien, Giacomoni, Franck, Courant, Frédérique, Favé, Gaëlle, Le Gall, Gwenaëlle, Chassaigne, Hubert, Tabet, Jean-Claude, Martin, Jean-Francois, Antignac, Jean-Philippe, Shintu, Laetitia, Defernez, Marianne, Philo, Mark, Alexandre-Gouaubau, Marie-Cécile, Amiot-Carlin, Marie-Josephe, Bossis, Mathilde, Triba, Mohamed N., Stojilkovic, Natali, Banzet, Nathalie, Molinié, Roland, Bott, Romain, Goulitquer, Sophie, Caldarelli, Stefano, Rutledge, Douglas N.
Published in Metabolomics (01.08.2015)
Published in Metabolomics (01.08.2015)
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WiPP: Workflow for Improved Peak Picking for Gas Chromatography-Mass Spectrometry (GC-MS) Data
Borgsmüller, Nico, Gloaguen, Yoann, Opialla, Tobias, Blanc, Eric, Sicard, Emilie, Royer, Anne-Lise, Le Bizec, Bruno, Durand, Stéphanie, Migné, Carole, Pétéra, Mélanie, Pujos-Guillot, Estelle, Giacomoni, Franck, Guitton, Yann, Beule, Dieter, Kirwan, Jennifer
Published in Metabolites (21.08.2019)
Published in Metabolites (21.08.2019)
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TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes
Leroy, Philippe, Guilhot, Nicolas, Sakai, Hiroaki, Bernard, Aurélien, Choulet, Frédéric, Theil, Sébastien, Reboux, Sébastien, Amano, Naoki, Flutre, Timothée, Pelegrin, Céline, Ohyanagi, Hajime, Seidel, Michael, Giacomoni, Franck, Reichstadt, Mathieu, Alaux, Michael, Gicquello, Emmanuelle, Legeai, Fabrice, Cerutti, Lorenzo, Numa, Hisataka, Tanaka, Tsuyoshi, Mayer, Klaus, Itoh, Takeshi, Quesneville, Hadi, Feuillet, Catherine
Published in Frontiers in plant science (01.01.2012)
Published in Frontiers in plant science (01.01.2012)
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The future of metabolomics in ELIXIR
van Rijswijk, Merlijn, Beirnaert, Charlie, Caron, Christophe, Cascante, Marta, Dominguez, Victoria, Dunn, Warwick B, Ebbels, Timothy M D, Giacomoni, Franck, Gonzalez-Beltran, Alejandra, Hankemeier, Thomas, Haug, Kenneth, Izquierdo-Garcia, Jose L, Jimenez, Rafael C, Jourdan, Fabien, Kale, Namrata, Klapa, Maria I, Kohlbacher, Oliver, Koort, Kairi, Kultima, Kim, Le Corguillé, Gildas, Moschonas, Nicholas K, Neumann, Steffen, O'Donovan, Claire, Reczko, Martin, Rocca-Serra, Philippe, Rosato, Antonio, Salek, Reza M, Sansone, Susanna-Assunta, Satagopam, Venkata, Schober, Daniel, Shimmo, Ruth, Spicer, Rachel A, Spjuth, Ola, Thévenot, Etienne A, Viant, Mark R, Weber, Ralf J M, Willighagen, Egon L, Zanetti, Gianluigi, Steinbeck, Christoph
Published in F1000 research (2017)
Published in F1000 research (2017)
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Journal Article
FORUM: building a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases
Delmas, Maxime, Filangi, Olivier, Paulhe, Nils, Vinson, Florence, Duperier, Christophe, Garrier, William, Saunier, Paul-Emeric, Pitarch, Yoann, Jourdan, Fabien, Giacomoni, Franck, Frainay, Clément
Published in Bioinformatics (Oxford, England) (05.11.2021)
Published in Bioinformatics (Oxford, England) (05.11.2021)
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Journal Article
Nutrimetabolomics: An Integrative Action for Metabolomic Analyses in Human Nutritional Studies
Ulaszewska, Marynka M., Weinert, Christoph H., Trimigno, Alessia, Portmann, Reto, Andres Lacueva, Cristina, Badertscher, René, Brennan, Lorraine, Brunius, Carl, Bub, Achim, Capozzi, Francesco, Cialiè Rosso, Marta, Cordero, Chiara E., Daniel, Hannelore, Durand, Stéphanie, Egert, Bjoern, Ferrario, Paola G., Feskens, Edith J.M., Franceschi, Pietro, Garcia‐Aloy, Mar, Giacomoni, Franck, Giesbertz, Pieter, González‐Domínguez, Raúl, Hanhineva, Kati, Hemeryck, Lieselot Y., Kopka, Joachim, Kulling, Sabine E., Llorach, Rafael, Manach, Claudine, Mattivi, Fulvio, Migné, Carole, Münger, Linda H., Ott, Beate, Picone, Gianfranco, Pimentel, Grégory, Pujos‐Guillot, Estelle, Riccadonna, Samantha, Rist, Manuela J., Rombouts, Caroline, Rubert, Josep, Skurk, Thomas, Sri Harsha, Pedapati S. C., Meulebroek, Lieven, Vanhaecke, Lynn, Vázquez‐Fresno, Rosa, Wishart, David, Vergères, Guy
Published in Molecular nutrition & food research (01.01.2019)
Published in Molecular nutrition & food research (01.01.2019)
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Journal Article
Create, run, share, publish, and reference your LC–MS, FIA–MS, GC–MS, and NMR data analysis workflows with the Workflow4Metabolomics 3.0 Galaxy online infrastructure for metabolomics
Guitton, Yann, Tremblay-Franco, Marie, Le Corguillé, Gildas, Martin, Jean-François, Pétéra, Mélanie, Roger-Mele, Pierrick, Delabrière, Alexis, Goulitquer, Sophie, Monsoor, Misharl, Duperier, Christophe, Canlet, Cécile, Servien, Rémi, Tardivel, Patrick, Caron, Christophe, Giacomoni, Franck, Thévenot, Etienne A.
Published in The international journal of biochemistry & cell biology (01.12.2017)
Published in The international journal of biochemistry & cell biology (01.12.2017)
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Journal Article
FragHub: A Mass Spectral Library Data Integration Workflow
Dablanc, Axel, Hennechart, Solweig, Perez, Amélie, Cabanac, Guillaume, Guitton, Yann, Paulhe, Nils, Lyan, Bernard, Jamin, Emilien L., Giacomoni, Franck, Marti, Guillaume
Published in Analytical chemistry (Washington) (19.07.2024)
Published in Analytical chemistry (Washington) (19.07.2024)
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Journal Article
Scaling-up metabolomics: Current state and perspectives
Hajjar, Ghina, Barros Santos, Millena C., Bertrand-Michel, Justine, Canlet, Cécile, Castelli, Florence, Creusot, Nicolas, Dechaumet, Sylvain, Diémé, Binta, Giacomoni, Franck, Giraudeau, Patrick, Guitton, Yann, Thévenot, Etienne, Tremblay-Franco, Marie, Junot, Christophe, Jourdan, Fabien, Fenaille, François, Comte, Blandine, Pétriacq, Pierre, Pujos-Guillot, Estelle
Published in TrAC, Trends in analytical chemistry (Regular ed.) (01.10.2023)
Published in TrAC, Trends in analytical chemistry (Regular ed.) (01.10.2023)
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Journal Article
Challenges and perspectives for naming lipids in the context of lipidomics
Witting, Michael, Malik, Adnan, Leach, Andrew, Bridge, Alan, Aimo, Lucila, Conroy, Matthew, O’donnell, Valerie, Hoffmann, Nils, Kopczynski, Dominik, Giacomoni, Franck, Paulhe, Nils, Gassiot, Amaury Cazenave, Poupin, Nathalie, Jourdan, Fabien, Bertrand-Michel, Justine
Published in Metabolomics (24.01.2024)
Published in Metabolomics (24.01.2024)
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Journal Article
Challenges and perspectives for naming lipids in the context of lipidomics
Witting, Michael, Malik, Adnan, Leach, Andrew, Bridge, Alan, Aimo, Lucila, Conroy, Matthew J., O’Donnell, Valerie B., Hoffmann, Nils, Kopczynski, Dominik, Giacomoni, Franck, Paulhe, Nils, Gassiot, Amaury Cazenave, Poupin, Nathalie, Jourdan, Fabien, Bertrand-Michel, Justine
Published in Metabolomics (24.01.2024)
Published in Metabolomics (24.01.2024)
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Journal Article
Suggesting disease associations for overlooked metabolites using literature from metabolic neighbors
Delmas, Maxime, Filangi, Olivier, Duperier, Christophe, Paulhe, Nils, Vinson, Florence, Rodriguez-Mier, Pablo, Giacomoni, Franck, Jourdan, Fabien, Frainay, Clément
Published in Gigascience (28.12.2022)
Published in Gigascience (28.12.2022)
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Journal Article
PeakForest: a multi-platform digital infrastructure for interoperable metabolite spectral data and metadata management
Paulhe, Nils, Canlet, Cécile, Damont, Annelaure, Peyriga, Lindsay, Durand, Stéphanie, Deborde, Catherine, Alves, Sandra, Bernillon, Stephane, Berton, Thierry, Bir, Raphael, Bouville, Alyssa, Cahoreau, Edern, Centeno, Delphine, Costantino, Robin, Debrauwer, Laurent, Delabrière, Alexis, Duperier, Christophe, Emery, Sylvain, Flandin, Amelie, Hohenester, Ulli, Jacob, Daniel, Joly, Charlotte, Jousse, Cyril, Lagree, Marie, Lamari, Nadia, Lefebvre, Marie, Lopez-Piffet, Claire, Lyan, Bernard, Maucourt, Mickael, Migne, Carole, Olivier, Marie-Francoise, Rathahao-Paris, Estelle, Petriacq, Pierre, Pinelli, Julie, Roch, Léa, Roger, Pierrick, Roques, Simon, Tabet, Jean-Claude, Tremblay-Franco, Marie, Traïkia, Mounir, Warnet, Anna, Zhendre, Vanessa, Rolin, Dominique, Jourdan, Fabien, Thévenot, Etienne, Moing, Annick, Jamin, Emilien, Fenaille, François, Junot, Christophe, Pujos-Guillot, Estelle, Giacomoni, Franck
Published in Metabolomics (14.06.2022)
Published in Metabolomics (14.06.2022)
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Journal Article
Assessment of protein modifications in liver of rats under chronic treatment with paracetamol (acetaminophen) using two complementary mass spectrometry-based metabolomic approaches
Mast, Carole, Lyan, Bernard, Joly, Charlotte, Centeno, Delphine, Giacomoni, Franck, Martin, Jean-François, Mosoni, Laurent, Dardevet, Dominique, Pujos-Guillot, Estelle, Papet, Isabelle
Published in Journal of proteomics (29.04.2015)
Published in Journal of proteomics (29.04.2015)
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Journal Article
Nutrimetabolomics: An Integrative Action for Metabolomic Analyses in Human Nutritional Studies
Ulaszewska, Marynka M, Weinert, Christoph H, Trimigno, Alessia, Portmann, Reto, Andres Lacueva, Cristina, Badertscher, René, Brennan, Lorraine, Brunius, Carl, Bub, Achim, Capozzi, Francesco, Cialiè Rosso, Marta, Cordero, Chiara E, Daniel, Hannelore, Durand, Stéphanie, Egert, Bjoern, Ferrario, Paola G, Feskens, Edith J.M, Franceschi, Pietro, Garcia-Aloy, Mar, Giacomoni, Franck, Giesbertz, Pieter, González-Domínguez, Raúl, Hanhineva, Kati, Hemeryck, Lieselot Y, Kopka, Joachim, Kulling, Sabine E, Llorach, Rafael, Manach, Claudine, Mattivi, Fulvio, Migné, Carole, Münger, Linda H, Ott, Beate, Picone, Gianfranco, Pimentel, Grégory, Pujos-Guillot, Estelle, Riccadonna, Samantha, Rist, Manuela J, Rombouts, Caroline, Rubert, Josep, Skurk, Thomas, Sri Harsha, Pedapati S.C, Meulebroek, Lieven, Van, Vanhaecke, Lynn, Vázquez-Fresno, Rosa, Wishart, David, Vergères, Guy
Published in Molecular nutrition & food research (2018)
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Published in Molecular nutrition & food research (2018)
Journal Article
A Computational Solution to Automatically Map Metabolite Libraries in the Context of Genome Scale Metabolic Networks
Merlet, Benjamin, Paulhe, Nils, Vinson, Florence, Frainay, Clément, Chazalviel, Maxime, Poupin, Nathalie, Gloaguen, Yoann, Giacomoni, Franck, Jourdan, Fabien
Published in Frontiers in molecular biosciences (01.01.2016)
Published in Frontiers in molecular biosciences (01.01.2016)
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Journal Article
The future of metabolomics in ELIXIR [version 2; peer review: 3 approved]
van Rijswijk, Merlijn, Beirnaert, Charlie, Caron, Christophe, Cascante, Marta, Dominguez, Victoria, Dunn, Warwick B, Ebbels, Timothy M. D, Giacomoni, Franck, Gonzalez-Beltran, Alejandra, Hankemeier, Thomas, Haug, Kenneth, Izquierdo-Garcia, Jose L, Jimenez, Rafael C, Jourdan, Fabien, Kale, Namrata, Klapa, Maria I, Kohlbacher, Oliver, Koort, Kairi, Kultima, Kim, Le Corguillé, Gildas, Moreno, Pablo, Moschonas, Nicholas K, Neumann, Steffen, O'Donovan, Claire, Reczko, Martin, Rocca-Serra, Philippe, Rosato, Antonio, Salek, Reza M, Sansone, Susanna-Assunta, Satagopam, Venkata, Schober, Daniel, Shimmo, Ruth, Spicer, Rachel A, Spjuth, Ola, Thévenot, Etienne A, Viant, Mark R, Weber, Ralf J. M, Willighagen, Egon L, Zanetti, Gianluigi, Steinbeck, Christoph
Published in F1000 research (2017)
Published in F1000 research (2017)
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Journal Article
Can we Trust Untargeted Metabolomics: Results of the Metabo-ring Initiative, a Large-scale Multi-instruments Inter-laboratoire Study
Martin, Jean-Charles, Maillot, Mathieu, Mazerolles, Gerard, Verdu, Alexandre, Lyan, Bernard, Migné, Carole, Defoort, Catherine, Canlet, Cécile, Junot, Christophe, Guillou, Claude, Manach, Claudine, Jacob, Daniel, Jouan-Rimbaud Bouveresse, Delphine, Rathahao-Paris, Estelle, Pujos-Guillot, Estelle, Jourdan, Fabien, Giacomoni, Franck, Courant, Frédérique, Fave, Gaelle, Le Gall, Gwenaëlle, Chassaigne, Hubert, Tabet, Jean-Claude, Martin, Jean-Francois, Antignac, Jean-Philippe, Shintu, Laetitia, Defernez, Marianne, Philo, Mark, Alexandre Gouaubau, Marie-Cécile, Amiot-Carlin, Marie Josephe, Bossis, Mathilde, Triba, Mohamed, Stojilkovic, Nathali, Banzet, Nathalie, Molinié, Roland, Bott, Romain, Goulitquer, Sophie, Caldarelli, Stefano, Rutledge, Douglas
Published in Metabolomics (2015)
Published in Metabolomics (2015)
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Journal Article
Suggesting disease associations for overlooked metabolites using literature from metabolic neighbours
Delmas, Maxime, Filangi, Olivier, Duperier, Christophe, Paulhe, Nils, Vinson, Florence, Rodriguez-Mier, Pablo, Giacomoni, Franck, Jourdan, Fabien, Frainay, Clément
Published in bioRxiv (15.09.2022)
Published in bioRxiv (15.09.2022)
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