RNA sequence analysis reveals macroscopic somatic clonal expansion across normal tissues
Yizhak, Keren, Aguet, François, Kim, Jaegil, Hess, Julian M, Kübler, Kirsten, Grimsby, Jonna, Frazer, Ruslana, Zhang, Hailei, Haradhvala, Nicholas J, Rosebrock, Daniel, Livitz, Dimitri, Li, Xiao, Arich-Landkof, Eila, Shoresh, Noam, Stewart, Chip, Segrè, Ayellet V, Branton, Philip A, Polak, Paz, Ardlie, Kristin G, Getz, Gad
Published in Science (American Association for the Advancement of Science) (07.06.2019)
Published in Science (American Association for the Advancement of Science) (07.06.2019)
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Journal Article
Genomic complexity of multiple myeloma and its clinical implications
Manier, Salomon, Salem, Karma Z, Park, Jihye, Landau, Dan A, Getz, Gad, Ghobrial, Irene M
Published in Nature reviews. Clinical oncology (01.02.2017)
Published in Nature reviews. Clinical oncology (01.02.2017)
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Journal Article
Single-cell RNA sequencing: one step closer to the clinic
Sklavenitis-Pistofidis, Romanos, Getz, Gad, Ghobrial, Irene
Published in Nature medicine (01.03.2021)
Published in Nature medicine (01.03.2021)
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Journal Article
RNA-SeQC 2: efficient RNA-seq quality control and quantification for large cohorts
Graubert, Aaron, Aguet, François, Ravi, Arvind, Ardlie, Kristin G, Getz, Gad
Published in Bioinformatics (Oxford, England) (29.09.2021)
Published in Bioinformatics (Oxford, England) (29.09.2021)
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Journal Article
Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples
Cibulskis, Kristian, Lawrence, Michael S, Carter, Scott L, Sivachenko, Andrey, Jaffe, David, Sougnez, Carrie, Gabriel, Stacey, Meyerson, Matthew, Lander, Eric S, Getz, Gad
Published in Nature biotechnology (01.03.2013)
Published in Nature biotechnology (01.03.2013)
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Journal Article
Single-cell profiling of tumour evolution in multiple myeloma - opportunities for precision medicine
Dutta, Ankit K, Alberge, Jean-Baptiste, Sklavenitis-Pistofidis, Romanos, Lightbody, Elizabeth D, Getz, Gad, Ghobrial, Irene M
Published in Nature reviews. Clinical oncology (01.04.2022)
Published in Nature reviews. Clinical oncology (01.04.2022)
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Journal Article
Response and Acquired Resistance to Everolimus in Anaplastic Thyroid Cancer
Wagle, Nikhil, Grabiner, Brian C, Van Allen, Eliezer M, Amin-Mansour, Ali, Taylor-Weiner, Amaro, Rosenberg, Mara, Gray, Nathanael, Barletta, Justine A, Guo, Yanan, Swanson, Scott J, Ruan, Daniel T, Hanna, Glenn J, Haddad, Robert I, Getz, Gad, Kwiatkowski, David J, Carter, Scott L, Sabatini, David M, Jänne, Pasi A, Garraway, Levi A, Lorch, Jochen H
Published in The New England journal of medicine (09.10.2014)
Published in The New England journal of medicine (09.10.2014)
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Journal Article
Type 2 diabetes genetic loci informed by multi-trait associations point to disease mechanisms and subtypes: A soft clustering analysis
Udler, Miriam S, Kim, Jaegil, von Grotthuss, Marcin, Bonàs-Guarch, Sílvia, Cole, Joanne B, Chiou, Joshua, Boehnke, Michael, Laakso, Markku, Atzmon, Gil, Glaser, Benjamin, Mercader, Josep M, Gaulton, Kyle, Flannick, Jason, Getz, Gad, Florez, Jose C
Published in PLoS medicine (21.09.2018)
Published in PLoS medicine (21.09.2018)
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Journal Article
Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer
Ouspenskaia, Tamara, Law, Travis, Clauser, Karl R, Klaeger, Susan, Sarkizova, Siranush, Aguet, François, Li, Bo, Christian, Elena, Knisbacher, Binyamin A, Le, Phuong M, Hartigan, Christina R, Keshishian, Hasmik, Apffel, Annie, Oliveira, Giacomo, Zhang, Wandi, Chen, Sarah, Chow, Yuen Ting, Ji, Zhe, Jungreis, Irwin, Shukla, Sachet A, Justesen, Sune, Bachireddy, Pavan, Kellis, Manolis, Getz, Gad, Hacohen, Nir, Keskin, Derin B, Carr, Steven A, Wu, Catherine J, Regev, Aviv
Published in Nature biotechnology (01.02.2022)
Published in Nature biotechnology (01.02.2022)
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Journal Article
GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers
Mermel, Craig H, Schumacher, Steven E, Hill, Barbara, Meyerson, Matthew L, Beroukhim, Rameen, Getz, Gad
Published in Genome biology (28.04.2011)
Published in Genome biology (28.04.2011)
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Journal Article
Making sense of cancer genomic data
Chin, Lynda, Hahn, William C, Getz, Gad, Meyerson, Matthew
Published in Genes & development (15.03.2011)
Published in Genes & development (15.03.2011)
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Journal Article
Predicting and affecting response to cancer therapy based on pathway-level biomarkers
Ben-Hamo, Rotem, Jacob Berger, Adi, Gavert, Nancy, Miller, Mendy, Pines, Guy, Oren, Roni, Pikarsky, Eli, Benes, Cyril H., Neuman, Tzahi, Zwang, Yaara, Efroni, Sol, Getz, Gad, Straussman, Ravid
Published in Nature communications (03.07.2020)
Published in Nature communications (03.07.2020)
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Journal Article
Control of tumor-associated macrophages and T cells in glioblastoma via AHR and CD39
Takenaka, Maisa C, Gabriely, Galina, Rothhammer, Veit, Mascanfroni, Ivan D, Wheeler, Michael A, Chao, Chun-Cheih, Gutiérrez-Vázquez, Cristina, Kenison, Jessica, Tjon, Emily C, Barroso, Andreia, Vandeventer, Tyler, de Lima, Kalil Alves, Rothweiler, Sonja, Mayo, Lior, Ghannam, Soufiene, Zandee, Stephanie, Healy, Luke, Sherr, David, Farez, Mauricio F, Prat, Alexandre, Antel, Jack, Reardon, David A, Zhang, Hailei, Robson, Simon C, Getz, Gad, Weiner, Howard L, Quintana, Francisco J
Published in Nature neuroscience (01.05.2019)
Published in Nature neuroscience (01.05.2019)
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Journal Article
Age-Related Clonal Hematopoiesis Associated with Adverse Outcomes
Jaiswal, Siddhartha, Fontanillas, Pierre, Flannick, Jason, Manning, Alisa, Grauman, Peter V, Mar, Brenton G, Lindsley, R. Coleman, Mermel, Craig H, Burtt, Noel, Chavez, Alejandro, Higgins, John M, Moltchanov, Vladislav, Kuo, Frank C, Kluk, Michael J, Henderson, Brian, Kinnunen, Leena, Koistinen, Heikki A, Ladenvall, Claes, Getz, Gad, Correa, Adolfo, Banahan, Benjamin F, Gabriel, Stacey, Kathiresan, Sekar, Stringham, Heather M, McCarthy, Mark I, Boehnke, Michael, Tuomilehto, Jaakko, Haiman, Christopher, Groop, Leif, Atzmon, Gil, Wilson, James G, Neuberg, Donna, Altshuler, David, Ebert, Benjamin L
Published in The New England journal of medicine (25.12.2014)
Published in The New England journal of medicine (25.12.2014)
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Journal Article
Comprehensive analysis of cancer-associated somatic mutations in class I HLA genes
Shukla, Sachet A, Rooney, Michael S, Rajasagi, Mohini, Tiao, Grace, Dixon, Philip M, Lawrence, Michael S, Stevens, Jonathan, Lane, William J, Dellagatta, Jamie L, Steelman, Scott, Sougnez, Carrie, Cibulskis, Kristian, Kiezun, Adam, Hacohen, Nir, Brusic, Vladimir, Wu, Catherine J, Getz, Gad
Published in Nature biotechnology (01.11.2015)
Published in Nature biotechnology (01.11.2015)
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Journal Article
Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function
Eraslan, Gökcen, Drokhlyansky, Eugene, Anand, Shankara, Fiskin, Evgenij, Subramanian, Ayshwarya, Slyper, Michal, Wang, Jiali, Van Wittenberghe, Nicholas, Rouhana, John M, Waldman, Julia, Ashenberg, Orr, Lek, Monkol, Dionne, Danielle, Win, Thet Su, Cuoco, Michael S, Kuksenko, Olena, Tsankov, Alexander M, Branton, Philip A, Marshall, Jamie L, Greka, Anna, Getz, Gad, Segrè, Ayellet V, Aguet, François, Rozenblatt-Rosen, Orit, Ardlie, Kristin G, Regev, Aviv
Published in Science (American Association for the Advancement of Science) (13.05.2022)
Published in Science (American Association for the Advancement of Science) (13.05.2022)
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Journal Article
RNA-SeQC: RNA-seq metrics for quality control and process optimization
DELUCA, David S, LEVIN, Joshua Z, SIVACHENKO, Andrey, FENNELL, Timothy, NAZAIRE, Marc-Danie, WILLIAMS, Chris, REICH, Michael, WINCKLER, Wendy, GETZ, Gad
Published in Bioinformatics (Oxford, England) (01.06.2012)
Published in Bioinformatics (Oxford, England) (01.06.2012)
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Journal Article
Resensitization to Crizotinib by the Lorlatinib ALK Resistance Mutation L1198F
Shaw, Alice T, Friboulet, Luc, Leshchiner, Ignaty, Gainor, Justin F, Bergqvist, Simon, Brooun, Alexei, Burke, Benjamin J, Deng, Ya-Li, Liu, Wei, Dardaei, Leila, Frias, Rosa L, Schultz, Kate R, Logan, Jennifer, James, Leonard P, Smeal, Tod, Timofeevski, Sergei, Katayama, Ryohei, Iafrate, A. John, Le, Long, McTigue, Michele, Getz, Gad, Johnson, Ted W, Engelman, Jeffrey A
Published in The New England journal of medicine (07.01.2016)
Published in The New England journal of medicine (07.01.2016)
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Journal Article
SvABA: genome-wide detection of structural variants and indels by local assembly
Wala, Jeremiah A, Bandopadhayay, Pratiti, Greenwald, Noah F, O'Rourke, Ryan, Sharpe, Ted, Stewart, Chip, Schumacher, Steve, Li, Yilong, Weischenfeldt, Joachim, Yao, Xiaotong, Nusbaum, Chad, Campbell, Peter, Getz, Gad, Meyerson, Matthew, Zhang, Cheng-Zhong, Imielinski, Marcin, Beroukhim, Rameen
Published in Genome research (01.04.2018)
Published in Genome research (01.04.2018)
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