Cell2location maps fine-grained cell types in spatial transcriptomics
Kleshchevnikov, Vitalii, Shmatko, Artem, Dann, Emma, Aivazidis, Alexander, King, Hamish W., Li, Tong, Elmentaite, Rasa, Lomakin, Artem, Kedlian, Veronika, Gayoso, Adam, Jain, Mika Sarkin, Park, Jun Sung, Ramona, Lauma, Tuck, Elizabeth, Arutyunyan, Anna, Vento-Tormo, Roser, Gerstung, Moritz, James, Louisa, Stegle, Oliver, Bayraktar, Omer Ali
Published in Nature biotechnology (01.05.2022)
Published in Nature biotechnology (01.05.2022)
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Journal Article
Genomic Classification and Prognosis in Acute Myeloid Leukemia
Papaemmanuil, Elli, Gerstung, Moritz, Bullinger, Lars, Gaidzik, Verena I, Paschka, Peter, Roberts, Nicola D, Potter, Nicola E, Heuser, Michael, Thol, Felicitas, Bolli, Niccolo, Gundem, Gunes, Van Loo, Peter, Martincorena, Inigo, Ganly, Peter, Mudie, Laura, McLaren, Stuart, O’Meara, Sarah, Raine, Keiran, Jones, David R, Teague, Jon W, Butler, Adam P, Greaves, Mel F, Ganser, Arnold, Döhner, Konstanze, Schlenk, Richard F, Döhner, Hartmut, Campbell, Peter J
Published in The New England journal of medicine (09.06.2016)
Published in The New England journal of medicine (09.06.2016)
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Journal Article
Mutational signatures are jointly shaped by DNA damage and repair
Volkova, Nadezda V., Meier, Bettina, González-Huici, Víctor, Bertolini, Simone, Gonzalez, Santiago, Vöhringer, Harald, Abascal, Federico, Martincorena, Iñigo, Campbell, Peter J., Gartner, Anton, Gerstung, Moritz
Published in Nature communications (01.05.2020)
Published in Nature communications (01.05.2020)
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Journal Article
Learning mutational signatures and their multidimensional genomic properties with TensorSignatures
Vöhringer, Harald, Hoeck, Arne Van, Cuppen, Edwin, Gerstung, Moritz
Published in Nature communications (15.06.2021)
Published in Nature communications (15.06.2021)
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Journal Article
Universal Patterns of Selection in Cancer and Somatic Tissues
Martincorena, Iñigo, Raine, Keiran M., Gerstung, Moritz, Dawson, Kevin J., Haase, Kerstin, Van Loo, Peter, Davies, Helen, Stratton, Michael R., Campbell, Peter J.
Published in Cell (16.11.2017)
Published in Cell (16.11.2017)
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Journal Article
Cancer Evolution: Mathematical Models and Computational Inference
Beerenwinkel, Niko, Schwarz, Roland F., Gerstung, Moritz, Markowetz, Florian
Published in Systematic biology (01.01.2015)
Published in Systematic biology (01.01.2015)
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Journal Article
Genomic copy number predicts esophageal cancer years before transformation
Killcoyne, Sarah, Gregson, Eleanor, Wedge, David C., Woodcock, Dan J., Eldridge, Matthew D., de la Rue, Rachel, Miremadi, Ahmad, Abbas, Sujath, Blasko, Adrienn, Kosmidou, Cassandra, Januszewicz, Wladyslaw, Jenkins, Aikaterini Varanou, Gerstung, Moritz, Fitzgerald, Rebecca C.
Published in Nature medicine (01.11.2020)
Published in Nature medicine (01.11.2020)
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Journal Article
High burden and pervasive positive selection of somatic mutations in normal human skin
Martincorena, Iñigo, Roshan, Amit, Gerstung, Moritz, Ellis, Peter, Van Loo, Peter, McLaren, Stuart, Wedge, David C., Fullam, Anthony, Alexandrov, Ludmil B., Tubio, Jose M., Stebbings, Lucy, Menzies, Andrew, Widaa, Sara, Stratton, Michael R., Jones, Philip H., Campbell, Peter J.
Published in Science (American Association for the Advancement of Science) (22.05.2015)
Published in Science (American Association for the Advancement of Science) (22.05.2015)
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Journal Article
Classification and Personalized Prognosis in Myeloproliferative Neoplasms
Grinfeld, Jacob, Nangalia, Jyoti, Baxter, E. Joanna, Wedge, David C, Angelopoulos, Nicos, Cantrill, Robert, Godfrey, Anna L, Papaemmanuil, Elli, Gundem, Gunes, MacLean, Cathy, Cook, Julia, O’Neil, Laura, O’Meara, Sarah, Teague, Jon W, Butler, Adam P, Massie, Charlie E, Williams, Nicholas, Nice, Francesca L, Andersen, Christen L, Hasselbalch, Hans C, Guglielmelli, Paola, McMullin, Mary F, Vannucchi, Alessandro M, Harrison, Claire N, Gerstung, Moritz, Green, Anthony R, Campbell, Peter J
Published in The New England journal of medicine (11.10.2018)
Published in The New England journal of medicine (11.10.2018)
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Journal Article
Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis
Fu, Yu, Jung, Alexander W, Torne, Ramon Viñas, Gonzalez, Santiago, Vöhringer, Harald, Shmatko, Artem, Yates, Lucy R, Jimenez-Linan, Mercedes, Moore, Luiza, Gerstung, Moritz
Published in Nature cancer (01.08.2020)
Published in Nature cancer (01.08.2020)
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Journal Article
The longitudinal dynamics and natural history of clonal haematopoiesis
Fabre, Margarete A., de Almeida, José Guilherme, Fiorillo, Edoardo, Mitchell, Emily, Damaskou, Aristi, Rak, Justyna, Orrù, Valeria, Marongiu, Michele, Chapman, Michael Spencer, Vijayabaskar, M. S., Baxter, Joanna, Hardy, Claire, Abascal, Federico, Williams, Nicholas, Nangalia, Jyoti, Martincorena, Iñigo, Campbell, Peter J., McKinney, Eoin F., Cucca, Francesco, Gerstung, Moritz, Vassiliou, George S.
Published in Nature (London) (09.06.2022)
Published in Nature (London) (09.06.2022)
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Journal Article
Genomic Evolution of Breast Cancer Metastasis and Relapse
Yates, Lucy R., Knappskog, Stian, Wedge, David, Farmery, James H.R., Gonzalez, Santiago, Martincorena, Inigo, Alexandrov, Ludmil B., Van Loo, Peter, Haugland, Hans Kristian, Lilleng, Peer Kaare, Gundem, Gunes, Gerstung, Moritz, Pappaemmanuil, Elli, Gazinska, Patrycja, Bhosle, Shriram G., Jones, David, Raine, Keiran, Mudie, Laura, Latimer, Calli, Sawyer, Elinor, Desmedt, Christine, Sotiriou, Christos, Stratton, Michael R., Sieuwerts, Anieta M., Lynch, Andy G., Martens, John W., Richardson, Andrea L., Tutt, Andrew, Lønning, Per Eystein, Campbell, Peter J.
Published in Cancer cell (14.08.2017)
Published in Cancer cell (14.08.2017)
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Journal Article
Extensive heterogeneity in somatic mutation and selection in the human bladder
Lawson, Andrew R J, Abascal, Federico, Coorens, Tim H H, Hooks, Yvette, O'Neill, Laura, Latimer, Calli, Raine, Keiran, Sanders, Mathijs A, Warren, Anne Y, Mahbubani, Krishnaa T A, Bareham, Bethany, Butler, Timothy M, Harvey, Luke M R, Cagan, Alex, Menzies, Andrew, Moore, Luiza, Colquhoun, Alexandra J, Turner, William, Thomas, Benjamin, Gnanapragasam, Vincent, Williams, Nicholas, Rassl, Doris M, Vöhringer, Harald, Zumalave, Sonia, Nangalia, Jyoti, Tubío, José M C, Gerstung, Moritz, Saeb-Parsy, Kourosh, Stratton, Michael R, Campbell, Peter J, Mitchell, Thomas J, Martincorena, Iñigo
Published in Science (American Association for the Advancement of Science) (02.10.2020)
Published in Science (American Association for the Advancement of Science) (02.10.2020)
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Journal Article
Somatic mutation landscapes at single-molecule resolution
Abascal, Federico, Harvey, Luke M. R., Mitchell, Emily, Lawson, Andrew R. J., Lensing, Stefanie V., Ellis, Peter, Russell, Andrew J. C., Alcantara, Raul E., Baez-Ortega, Adrian, Wang, Yichen, Kwa, Eugene Jing, Lee-Six, Henry, Cagan, Alex, Coorens, Tim H. H., Chapman, Michael Spencer, Olafsson, Sigurgeir, Leonard, Steven, Jones, David, Machado, Heather E., Davies, Megan, Øbro, Nina F., Mahubani, Krishnaa T., Allinson, Kieren, Gerstung, Moritz, Saeb-Parsy, Kourosh, Kent, David G., Laurenti, Elisa, Stratton, Michael R., Rahbari, Raheleh, Campbell, Peter J., Osborne, Robert J., Martincorena, Iñigo
Published in Nature (London) (20.05.2021)
Published in Nature (London) (20.05.2021)
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Journal Article
Biallelic mutations in cancer genomes reveal local mutational determinants
Demeulemeester, Jonas, Dentro, Stefan C., Gerstung, Moritz, Van Loo, Peter
Published in Nature genetics (01.02.2022)
Published in Nature genetics (01.02.2022)
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Journal Article
Subclonal diversification of primary breast cancer revealed by multiregion sequencing
Yates, Lucy R, Gerstung, Moritz, Knappskog, Stian, Desmedt, Christine, Gundem, Gunes, Van Loo, Peter, Aas, Turid, Alexandrov, Ludmil B, Larsimont, Denis, Davies, Helen, Li, Yilong, Ju, Young Seok, Ramakrishna, Manasa, Haugland, Hans Kristian, Lilleng, Peer Kaare, Nik-Zainal, Serena, McLaren, Stuart, Butler, Adam, Martin, Sancha, Glodzik, Dominic, Menzies, Andrew, Raine, Keiran, Hinton, Jonathan, Jones, David, Mudie, Laura J, Jiang, Bing, Vincent, Delphine, Greene-Colozzi, April, Adnet, Pierre-Yves, Fatima, Aquila, Maetens, Marion, Ignatiadis, Michail, Stratton, Michael R, Sotiriou, Christos, Richardson, Andrea L, Lønning, Per Eystein, Wedge, David C, Campbell, Peter J
Published in Nature medicine (01.07.2015)
Published in Nature medicine (01.07.2015)
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Journal Article
Spatial competition shapes the dynamic mutational landscape of normal esophageal epithelium
Colom, Bartomeu, Alcolea, Maria P., Piedrafita, Gabriel, Hall, Michael W. J., Wabik, Agnieszka, Dentro, Stefan C., Fowler, Joanna C., Herms, Albert, King, Charlotte, Ong, Swee Hoe, Sood, Roshan K., Gerstung, Moritz, Martincorena, Inigo, Hall, Benjamin A., Jones, Philip H.
Published in Nature genetics (01.06.2020)
Published in Nature genetics (01.06.2020)
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Journal Article
Genomic landscape and chronological reconstruction of driver events in multiple myeloma
Maura, Francesco, Bolli, Niccoló, Angelopoulos, Nicos, Dawson, Kevin J., Leongamornlert, Daniel, Martincorena, Inigo, Mitchell, Thomas J., Fullam, Anthony, Gonzalez, Santiago, Szalat, Raphael, Abascal, Federico, Rodriguez-Martin, Bernardo, Samur, Mehmet Kemal, Glodzik, Dominik, Roncador, Marco, Fulciniti, Mariateresa, Tai, Yu Tzu, Minvielle, Stephane, Magrangeas, Florence, Moreau, Philippe, Corradini, Paolo, Anderson, Kenneth C., Tubio, Jose M. C., Wedge, David C., Gerstung, Moritz, Avet-Loiseau, Hervé, Munshi, Nikhil, Campbell, Peter J.
Published in Nature communications (23.08.2019)
Published in Nature communications (23.08.2019)
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Journal Article
Precision oncology for acute myeloid leukemia using a knowledge bank approach
Gerstung, Moritz, Papaemmanuil, Elli, Martincorena, Inigo, Bullinger, Lars, Gaidzik, Verena I, Paschka, Peter, Heuser, Michael, Thol, Felicitas, Bolli, Niccolo, Ganly, Peter, Ganser, Arnold, McDermott, Ultan, Döhner, Konstanze, Schlenk, Richard F, Döhner, Hartmut, Campbell, Peter J
Published in Nature genetics (01.03.2017)
Published in Nature genetics (01.03.2017)
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Journal Article
Spatial genomics maps the structure, nature and evolution of cancer clones
Lomakin, Artem, Svedlund, Jessica, Strell, Carina, Gataric, Milana, Shmatko, Artem, Rukhovich, Gleb, Park, Jun Sung, Ju, Young Seok, Dentro, Stefan, Kleshchevnikov, Vitalii, Vaskivskyi, Vasyl, Li, Tong, Bayraktar, Omer Ali, Pinder, Sarah, Richardson, Andrea L., Santagata, Sandro, Campbell, Peter J., Russnes, Hege, Gerstung, Moritz, Nilsson, Mats, Yates, Lucy R.
Published in Nature (London) (17.11.2022)
Published in Nature (London) (17.11.2022)
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Journal Article