A rooted phylogeny resolves early bacterial evolution
Coleman, Gareth A, Davín, Adrián A, Mahendrarajah, Tara A, Szánthó, Lénárd L, Spang, Anja, Hugenholtz, Philip, Szöllősi, Gergely J, Williams, Tom A
Published in Science (American Association for the Advancement of Science) (07.05.2021)
Published in Science (American Association for the Advancement of Science) (07.05.2021)
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Journal Article
Efficient Exploration of the Space of Reconciled Gene Trees
Szöllösi, Gergely J., Rosikiewicz, Wojciech, Boussau, Bastien, Tannier, Eric, Daubin, Vincent
Published in Systematic biology (01.11.2013)
Published in Systematic biology (01.11.2013)
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Journal Article
The Inference of Gene Trees with Species Trees
Szöllősi, Gergely J., Tannier, Eric, Daubin, Vincent, Boussau, Bastien
Published in Systematic biology (01.01.2015)
Published in Systematic biology (01.01.2015)
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Journal Article
Integrative modeling of gene and genome evolution roots the archaeal tree of life
Williams, Tom A., Szöllősi, Gergely J., Spang, Anja, Foster, Peter G., Heaps, Sarah E., Boussau, Bastien, Ettema, Thijs J. G., Embley, T. Martin
Published in Proceedings of the National Academy of Sciences - PNAS (06.06.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (06.06.2017)
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Journal Article
ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony
Jacox, Edwin, Chauve, Cedric, Szöllősi, Gergely J, Ponty, Yann, Scornavacca, Celine
Published in Bioinformatics (01.07.2016)
Published in Bioinformatics (01.07.2016)
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Journal Article
Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations
Szöllősi, Gergely J, Boussau, Bastien, Abby, Sophie S, Tannier, Eric, Daubin, Vincent
Published in Proceedings of the National Academy of Sciences - PNAS (23.10.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (23.10.2012)
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Journal Article
Damage and fluctuations induce loops in optimal transport networks
Katifori, Eleni, Szöllosi, Gergely J, Magnasco, Marcelo O
Published in Physical review letters (29.01.2010)
Published in Physical review letters (29.01.2010)
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Journal Article
Genome-scale coestimation of species and gene trees
Boussau, Bastien, Szöllosi, Gergely J, Duret, Laurent, Gouy, Manolo, Tannier, Eric, Daubin, Vincent
Published in Genome research (01.02.2013)
Published in Genome research (01.02.2013)
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Journal Article
SpeciesRax: A Tool for Maximum Likelihood Species Tree Inference from Gene Family Trees under Duplication, Transfer, and Loss
Morel, Benoit, Schade, Paul, Lutteropp, Sarah, Williams, Tom A, Szöllősi, Gergely J, Stamatakis, Alexandros
Published in Molecular biology and evolution (03.02.2022)
Published in Molecular biology and evolution (03.02.2022)
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Journal Article
Emergent neutrality in adaptive asexual evolution
Schiffels, Stephan, Szöllosi, Gergely J, Mustonen, Ville, Lässig, Michael
Published in Genetics (Austin) (01.12.2011)
Published in Genetics (Austin) (01.12.2011)
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Journal Article
How Long Does Wolbachia Remain on Board?
Bailly-Bechet, Marc, Martins-Simões, Patricia, Szöllosi, Gergely J, Mialdea, Gladys, Sagot, Marie-France, Charlat, Sylvain
Published in Molecular biology and evolution (01.05.2017)
Published in Molecular biology and evolution (01.05.2017)
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Journal Article
Divergent genomic trajectories predate the origin of animals and fungi
Ocaña-Pallarès, Eduard, Williams, Tom A., López-Escardó, David, Arroyo, Alicia S., Pathmanathan, Jananan S., Bapteste, Eric, Tikhonenkov, Denis V., Keeling, Patrick J., Szöllősi, Gergely J., Ruiz-Trillo, Iñaki
Published in Nature (London) (22.09.2022)
Published in Nature (London) (22.09.2022)
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Journal Article
Lateral Gene Transfer from the Dead
Szöllősi, Gergely J., Tannier, Eric, Lartillot, Nicolas, Daubin, Vincent
Published in Systematic biology (01.05.2013)
Published in Systematic biology (01.05.2013)
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Journal Article
AleRax: a tool for gene and species tree co-estimation and reconciliation under a probabilistic model of gene duplication, transfer, and loss
Morel, Benoit, Williams, Tom A, Stamatakis, Alexandros, Szöllősi, Gergely J
Published in Bioinformatics (Oxford, England) (29.03.2024)
Published in Bioinformatics (Oxford, England) (29.03.2024)
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Journal Article
Horizontal Gene Transfer and the History of Life
Daubin, Vincent, Szöllősi, Gergely J
Published in Cold Spring Harbor perspectives in biology (01.04.2016)
Published in Cold Spring Harbor perspectives in biology (01.04.2016)
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Journal Article