BatchPrimer3: a high throughput web application for PCR and sequencing primer design
You, Frank M, Huo, Naxin, Gu, Yong Qiang, Luo, Ming-Cheng, Ma, Yaqin, Hane, Dave, Lazo, Gerard R, Dvorak, Jan, Anderson, Olin D
Published in BMC bioinformatics (29.05.2008)
Published in BMC bioinformatics (29.05.2008)
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4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor
Luo, Ming-Cheng, Gu, Yong Q., You, Frank M., Deal, Karin R., Ma, Yaqin, Hu, Yuqin, Huo, Naxin, Wang, Yi, Wang, Jirui, Chen, Shiyong, Jorgensen, Chad M., Zhang, Yong, McGuire, Patrick E., Pasternak, Shiran, Stein, Joshua C., Ware, Doreen, Kramer, Melissa, McCombie, W. Richard, Kianian, Shahryar F., Martis, Mihaela M., Mayer, Klaus F. X., Sehgal, Sunish K., Li, Wanlong, Gill, Bikram S., Bevan, Michael W., Šimková, Hana, Doležel, Jaroslav, Weining, Song, Lazo, Gerard R., Anderson, Olin D., Dvorak, Jan
Published in Proceedings of the National Academy of Sciences - PNAS (07.05.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (07.05.2013)
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Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes
Akhunov, Eduard D, Akhunova, Alina R, Anderson, Olin D, Anderson, James A, Blake, Nancy, Clegg, Michael T, Coleman-Derr, Devin, Conley, Emily J, Crossman, Curt C, Deal, Karin R, Dubcovsky, Jorge, Gill, Bikram S, Gu, Yong Q, Hadam, Jakub, Heo, Hwayoung, Huo, Naxin, Lazo, Gerard R, Luo, Ming-Cheng, Ma, Yaqin Q, Matthews, David E, McGuire, Patrick E, Morrell, Peter L, Qualset, Calvin O, Renfro, James, Tabanao, Dindo, Talbert, Luther E, Tian, Chao, Toleno, Donna M, Warburton, Marilyn L, You, Frank M, Zhang, Wenjun, Dvorak, Jan
Published in BMC genomics (14.12.2010)
Published in BMC genomics (14.12.2010)
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Generation and Characterization of the Western Regional Research Center Brachypodium T-DNA Insertional Mutant Collection
Bragg, Jennifer N, Wu, Jiajie, Gordon, Sean P, Guttman, Mara E, Thilmony, Roger, Lazo, Gerard R, Gu, Yong Q, Vogel, John P, Hazen, Samuel P
Published in PloS one (17.09.2012)
Published in PloS one (17.09.2012)
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De novo transcriptome assembly and analyses of gene expression during photomorphogenesis in diploid wheat Triticum monococcum
Fox, Samuel E, Geniza, Matthew, Hanumappa, Mamatha, Naithani, Sushma, Sullivan, Chris, Preece, Justin, Tiwari, Vijay K, Elser, Justin, Leonard, Jeffrey M, Sage, Abigail, Gresham, Cathy, Kerhornou, Arnaud, Bolser, Dan, McCarthy, Fiona, Kersey, Paul, Lazo, Gerard R, Jaiswal, Pankaj
Published in PloS one (12.05.2014)
Published in PloS one (12.05.2014)
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SNP Discovery and Chromosome Anchoring Provide the First Physically-Anchored Hexaploid Oat Map and Reveal Synteny with Model Species
Oliver, Rebekah E, Tinker, Nicholas A, Lazo, Gerard R, Chao, Shiaoman, Jellen, Eric N, Carson, Martin L, Rines, Howard W, Obert, Donald E, Lutz, Joseph D, Shackelford, Irene, Korol, Abraham B, Wight, Charlene P, Gardner, Kyle M, Hattori, Jiro, Beattie, Aaron D, Bjørnstad, Åsmund, Bonman, J. Michael, Jannink, Jean-Luc, Sorrells, Mark E, Brown-Guedira, Gina L, Mitchell Fetch, Jennifer W, Harrison, Stephen A, Howarth, Catherine J, Ibrahim, Amir, Kolb, Frederic L, McMullen, Michael S, Murphy, J. Paul, Ohm, Herbert W, Rossnagel, Brian G, Yan, Weikai, Miclaus, Kelci J, Hiller, Jordan, Maughan, Peter J, Redman Hulse, Rachel R, Anderson, Joseph M, Islamovic, Emir, Jackson, Eric W, Xu, Mingliang
Published in PloS one (22.03.2013)
Published in PloS one (22.03.2013)
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Comparison of a high-density genetic linkage map to genome features in the model grass Brachypodium distachyon
Huo, Naxin, Garvin, David F., You, Frank M., McMahon, Stephanie, Luo, Ming-Cheng, Gu, Yong Q., Lazo, Gerard R., Vogel, John Philip
Published in Theoretical and applied genetics (01.08.2011)
Published in Theoretical and applied genetics (01.08.2011)
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A SNP Genotyping Array for Hexaploid Oat
Tinker, Nicholas A., Chao, Shiaoman, Lazo, Gerard R., Oliver, Rebekah E., Huang, Yung‐Fen, Poland, Jesse A., Jellen, Eric N., Maughan, Peter J., Kilian, Andrzej, Jackson, Eric W.
Published in The plant genome (01.11.2014)
Published in The plant genome (01.11.2014)
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Comparative DNA sequence analysis of wheat and rice genomes
Sorrells, Mark E, La Rota, Mauricio, Bermudez-Kandianis, Catherine E, Greene, Robert A, Kantety, Ramesh, Munkvold, Jesse D, Miftahudin, Mahmoud, Ahmed, Ma, Xuefeng, Gustafson, Perry J, Qi, Lili L, Echalier, Benjamin, Gill, Bikram S, Matthews, David E, Lazo, Gerard R, Chao, Shiaoman, Anderson, Olin D, Edwards, Hugh, Linkiewicz, Anna M, Dubcovsky, Jorge, Akhunov, Eduard D, Dvorak, Jan, Zhang, Deshui, Nguyen, Henry T, Peng, Junhua, Lapitan, Nora L V, Gonzalez-Hernandez, Jose L, Anderson, James A, Hossain, Khwaja, Kalavacharla, Venu, Kianian, Shahryar F, Choi, Dong-Woog, Close, Timothy J, Dilbirligi, Muharrem, Gill, Kulvinder S, Steber, Camille, Walker-Simmons, Mary K, McGuire, Patrick E, Qualset, Calvin O
Published in Genome research (01.08.2003)
Published in Genome research (01.08.2003)
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Transcriptome and gene expression analysis in cold-acclimated guayule (Parthenium argentatum) rubber-producing tissue
Ponciano, Grisel, McMahan, Colleen M., Xie, Wenshuang, Lazo, Gerard R., Coffelt, Terry A., Collins-Silva, Jillian, Nural-Taban, Aise, Gollery, Martin, Shintani, David K., Whalen, Maureen C.
Published in Phytochemistry (Oxford) (01.07.2012)
Published in Phytochemistry (Oxford) (01.07.2012)
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Leymus EST linkage maps identify 4NsL–5NsL reciprocal translocation, wheat-Leymus chromosome introgressions, and functionally important gene loci
Larson, Steven R., Kishii, Masahiro, Tsujimoto, Hisashi, Qi, Lili, Chen, Peidu, Lazo, Gerard R., Jensen, Kevin B., Wang, Richard R.-C.
Published in Theoretical and applied genetics (01.01.2012)
Published in Theoretical and applied genetics (01.01.2012)
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Model SNP development for complex genomes based on hexaploid oat using high-throughput 454 sequencing technology
Oliver, Rebekah E, Lazo, Gerard R, Lutz, Joseph D, Rubenfield, Marc J, Tinker, Nicholas A, Anderson, Joseph M, Wisniewski Morehead, Nicole H, Adhikary, Dinesh, Jellen, Eric N, Maughan, P Jeffrey, Brown Guedira, Gina L, Chao, Shiaoman, Beattie, Aaron D, Carson, Martin L, Rines, Howard W, Obert, Donald E, Bonman, J Michael, Jackson, Eric W
Published in BMC genomics (27.01.2011)
Published in BMC genomics (27.01.2011)
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Physical mapping resources for large plant genomes: radiation hybrids for wheat D-genome progenitor Aegilops tauschii
Kumar, Ajay, Simons, Kristin, Iqbal, Muhammad J, de Jiménez, Monika Michalak, Bassi, Filippo M, Ghavami, Farhad, Al-Azzam, Omar, Drader, Thomas, Wang, Yi, Luo, Ming-Cheng, Gu, Yong Q, Denton, Anne, Lazo, Gerard R, Xu, Steven S, Dvorak, Jan, Kianian, Penny M A, Kianian, Shahryar F
Published in BMC genomics (05.11.2012)
Published in BMC genomics (05.11.2012)
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Types and Rates of Sequence Evolution at the High-Molecular-Weight Glutenin Locus in Hexaploid Wheat and Its Ancestral Genomes
Gu, Yong Qiang, Salse, Jerome, Coleman-Derr, Devin, Dupin, Adeline, Crossman, Curt, Lazo, Gerard R, Huo, Naxin, Belcram, Harry, Ravel, Catherine, Charmet, Gilles, Charles, Mathieu, Anderson, Olin D, Chalhoub, Boulos
Published in Genetics (Austin) (01.11.2006)
Published in Genetics (Austin) (01.11.2006)
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A strategy for building and using a human reference pangenome [version 2; peer review: 2 approved]
Llamas, Bastien, Narzisi, Giuseppe, Schneider, Valerie, Audano, Peter A, Biederstedt, Evan, Blauvelt, Lon, Bradbury, Peter, Chang, Xian, Chin, Chen-Shan, Fungtammasan, Arkarachai, Clarke, Wayne E, Cleary, Alan, Ebler, Jana, Eizenga, Jordan, Sibbesen, Jonas A, Markello, Charles J, Garrison, Erik, Garg, Shilpa, Hickey, Glenn, Lazo, Gerard R, Lin, Michael F, Mahmoud, Medhat, Marschall, Tobias, Minkin, Ilia, Monlong, Jean, Musunuri, Rajeeva L, Sagayaradj, Sagayamary, Novak, Adam M, Rautiainen, Mikko, Regier, Allison, Sedlazeck, Fritz J, Siren, Jouni, Souilmi, Yassine, Wagner, Justin, Wrightsman, Travis, Yokoyama, Toshiyuki T, Zeng, Qiandong, Zook, Justin M, Paten, Benedict, Busby, Ben
Published in F1000 research (29.07.2021)
Published in F1000 research (29.07.2021)
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Comparative systems biology reveals allelic variation modulating Tocochromanol profiles in Barley (Hordeum vulgare L.)
Oliver, Rebekah E, Islamovic, Emir, Obert, Donald E, Wise, Mitchell L, Herrin, Lauri L, Hang, An, Harrison, Stephen A, Ibrahim, Amir, Marshall, Juliet M, Miclaus, Kelci J, Lazo, Gerard R, Hu, Gongshe, Jackson, Eric W
Published in PloS one (12.05.2014)
Published in PloS one (12.05.2014)
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A strategy for building and using a human reference pangenome [version 1; peer review: 1 approved, 1 approved with reservations]
Llamas, Bastien, Narzisi, Giuseppe, Schneider, Valerie, Audano, Peter A, Biederstedt, Evan, Blauvelt, Lon, Bradbury, Peter, Chang, Xian, Chin, Chen-Shan, Fungtammasan, Arkarachai, Clarke, Wayne E, Cleary, Alan, Ebler, Jana, Eizenga, Jordan, Sibbesen, Jonas A, Markello, Charles J, Garrison, Erik, Garg, Shilpa, Hickey, Glenn, Lazo, Gerard R, Lin, Michael F, Mahmoud, Medhat, Marschall, Tobias, Minkin, Ilia, Monlong, Jean, Musunuri, Rajeeva L, Sagayaradj, Sagayamary, Novak, Adam M, Rautiainen, Mikko, Regier, Allison, Sedlazeck, Fritz J, Siren, Jouni, Souilmi, Yassine, Wagner, Justin, Wrightsman, Travis, Yokoyama, Toshiyuki T, Zeng, Qiandong, Zook, Justin M, Paten, Benedict, Busby, Ben
Published in F1000 research (2019)
Published in F1000 research (2019)
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ConservedPrimers 2.0: a high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery
You, Frank M, Huo, Naxin, Gu, Yong Q, Lazo, Gerard R, Dvorak, Jan, Anderson, Olin D
Published in BMC bioinformatics (13.10.2009)
Published in BMC bioinformatics (13.10.2009)
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A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat
Gu, Yong Q, Ma, Yaqin, Huo, Naxin, Vogel, John P, You, Frank M, Lazo, Gerard R, Nelson, William M, Soderlund, Carol, Dvorak, Jan, Anderson, Olin D, Luo, Ming-Cheng
Published in BMC genomics (27.10.2009)
Published in BMC genomics (27.10.2009)
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