Tracking the introduction and spread of SARS-CoV-2 in coastal Kenya
Githinji, George, de Laurent, Zaydah R., Mohammed, Khadija Said, Omuoyo, Donwilliams O., Macharia, Peter M., Morobe, John M., Otieno, Edward, Kinyanjui, Samson M., Agweyu, Ambrose, Maitha, Eric, Kitole, Ben, Suleiman, Thani, Mwakinangu, Mohamed, Nyambu, John, Otieno, John, Salim, Barke, Kasera, Kadondi, Kiiru, John, Aman, Rashid, Barasa, Edwine, Warimwe, George, Bejon, Philip, Tsofa, Benjamin, Ochola-Oyier, Lynette Isabella, Nokes, D. James, Agoti, Charles N.
Published in Nature communications (10.08.2021)
Published in Nature communications (10.08.2021)
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New SARS-CoV-2 Omicron Variant with Spike Protein Mutation Y451H, Kilifi, Kenya, March–May 2023
Mwanga, Mike J, Lambisia, Arnold W, Morobe, John Mwita, Murunga, Nickson, Moraa, Edidah, Ndwiga, Leonard, Cheruiyot, Robinson, Musyoki, Jennifer, Mutunga, Martin, GuzmanRincon, Laura M, Sande, Charles, Mwangangi, Joseph, Bejon, Philip, Ochola-Oyier, Lynette Isabella, Nokes, D. James, Agoti, Charles N, Nyiro, Joyce, Githinji, George
Published in Emerging infectious diseases (01.11.2023)
Published in Emerging infectious diseases (01.11.2023)
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Optimization of the SARS-CoV-2 ARTIC Network V4 Primers and Whole Genome Sequencing Protocol
Lambisia, Arnold W, Mohammed, Khadija S, Makori, Timothy O, Ndwiga, Leonard, Mburu, Maureen W, Morobe, John M, Moraa, Edidah O, Musyoki, Jennifer, Murunga, Nickson, Mwangi, Jane N, Nokes, D James, Agoti, Charles N, Ochola-Oyier, Lynette Isabella, Githinji, George
Published in Frontiers in medicine (17.02.2022)
Published in Frontiers in medicine (17.02.2022)
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The Plasmodium falciparum Rh5 invasion protein complex reveals an excess of rare variant mutations
Ndwiga, Leonard, Osoti, Victor, Ochwedo, Kevin Omondi, Wamae, Kevin, Bejon, Philip, Rayner, Julian C, Githinji, George, Ochola-Oyier, Lynette Isabella
Published in Malaria journal (23.06.2021)
Published in Malaria journal (23.06.2021)
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Incidence of chikungunya virus infections among Kenyan children with neurological disease, 2014-2018: A cohort study
Nyamwaya, Doris K, Otiende, Mark, Mwango, Lilian, Kariuki, Symon M, Otieno, Berrick, Omuoyo, Donwilliams O, Githinji, George, Kitsao, Barnes S, Karanja, Henry K, Gitonga, John N, de Laurent, Zaydah R, Davies, Alun, Mwarumba, Salim, Agoti, Charles N, Thumbi, Samuel M, Hamaluba, Mainga M, Newton, Charles R, Bejon, Philip, Warimwe, George M
Published in PLoS medicine (12.05.2022)
Published in PLoS medicine (12.05.2022)
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Endemic chikungunya fever in Kenyan children: a prospective cohort study
Nyamwaya, Doris K, Otiende, Mark, Omuoyo, Donwilliams O, Githinji, George, Karanja, Henry K, Gitonga, John N, R de Laurent, Zaydah, Otieno, James R, Sang, Rosemary, Kamau, Everlyn, Cheruiyot, Stanley, Otieno, Edward, Agoti, Charles N, Bejon, Philip, Thumbi, Samuel M, Warimwe, George M
Published in BMC infectious diseases (18.02.2021)
Published in BMC infectious diseases (18.02.2021)
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Transmission networks of SARS-CoV-2 in Coastal Kenya during the first two waves: A retrospective genomic study
Agoti, Charles N, Ochola-Oyier, Lynette Isabella, Dellicour, Simon, Mohammed, Khadija Said, Lambisia, Arnold W, de Laurent, Zaydah R, Morobe, John M, Mburu, Maureen W, Omuoyo, Donwilliams O, Ongera, Edidah M, Ndwiga, Leonard, Maitha, Eric, Kitole, Benson, Suleiman, Thani, Mwakinangu, Mohamed, Nyambu, John K, Otieno, John, Salim, Barke, Musyoki, Jennifer, Murunga, Nickson, Otieno, Edward, Kiiru, John N, Kasera, Kadondi, Amoth, Patrick, Mwangangi, Mercy, Aman, Rashid, Kinyanjui, Samson, Warimwe, George, Phan, My, Agweyu, Ambrose, Cotten, Matthew, Barasa, Edwine, Tsofa, Benjamin, Nokes, D James, Bejon, Philip, Githinji, George
Published in eLife (14.06.2022)
Published in eLife (14.06.2022)
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Genomic Epidemiology of SARS-CoV-2 in Seychelles, 2020-2021
Morobe, John Mwita, Pool, Brigitte, Marie, Lina, Didon, Dwayne, Lambisia, Arnold W, Makori, Timothy, Mohammed, Khadija Said, de Laurent, Zaydah R, Ndwiga, Leonard, Mburu, Maureen W, Moraa, Edidah, Murunga, Nickson, Musyoki, Jennifer, Mwacharo, Jedida, Nyamako, Lydia, Riako, Debra, Ephnatus, Pariken, Gambo, Faith, Naimani, Josephine, Namulondo, Joyce, Tembo, Susan Zimba, Ogendi, Edwin, Balde, Thierno, Dratibi, Fred Athanasius, Yahaya, Ali Ahmed, Gumede, Nicksy, Achilla, Rachel A, Borus, Peter K, Wanjohi, Dorcas W, Tessema, Sofonias K, Mwangangi, Joseph, Bejon, Philip, Nokes, David J, Ochola-Oyier, Lynette Isabella, Githinji, George, Biscornet, Leon, Agoti, Charles N
Published in Viruses (16.06.2022)
Published in Viruses (16.06.2022)
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Exploring Plasmodium falciparum Var Gene Expression to Assess Host Selection Pressure on Parasites During Infancy
Kivisi, Cheryl A, Muthui, Michelle, Hunt, Martin, Fegan, Greg, Otto, Thomas Dan, Githinji, George, Warimwe, George M, Rance, Richard, Marsh, Kevin, Bull, Peter C, Abdi, Abdirahman I
Published in Frontiers in immunology (09.10.2019)
Published in Frontiers in immunology (09.10.2019)
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A systematic review of Hepatitis B virus (HBV) prevalence and genotypes in Kenya: Data to inform clinical care and health policy
Downs, Louise O, Campbell, Cori, Yonga, Paul, Githinji, George, Ansari, M Azim, Matthews, Philippa C, Etyang, Anthony O
Published in PLOS global public health (2023)
Published in PLOS global public health (2023)
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Where do those data go? Reuse of screening results from clinical trials to estimate population prevalence of HBV infection in adults in Kilifi, Kenya
Downs, Louise O, Campbell, Cori, Abouyannis, Michael, Otiende, Mark, Kapulu, Melissa, Obiero, Christina W, Hamaluba, Mainga, Ngetsa, Caroline, Andersson, Monique I, Githinji, George, Warimwe, George, Baisley, Kathy, Scott, J Anthony G, Matthews, Philippa C, Etyang, Anthony
Published in Journal of Virus Eradication (01.12.2023)
Published in Journal of Virus Eradication (01.12.2023)
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Whole-genome sequencing of SARS-CoV-2 isolates from symptomatic and asymptomatic individuals in Tanzania
Mziray, Shabani Ramadhani, van Zwetselaar, Marco, Kayuki, Charles C, Mbelele, Peter M, Makubi, Abel N, Magesa, Alex S, Kisonga, Riziki M, Sonda, Tolbert B, Kibiki, Gibson S, Githinji, George, Heysell, Scott K, Chilongola, Jaffu O, Mpagama, Stellah G
Published in Frontiers in medicine (04.01.2023)
Published in Frontiers in medicine (04.01.2023)
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Journal of Open Source Software (JOSS): design and first-year review
Smith, Arfon M, Niemeyer, Kyle E, Katz, Daniel S, Barba, Lorena A, Githinji, George, Gymrek, Melissa, Huff, Kathryn D, Madan, Christopher R, Mayes, Abigail Cabunoc, Moerman, Kevin M, Prins, Pjotr, Ram, Karthik, Rokem, Ariel, Teal, Tracy K, Guimera, Roman Valls, Vanderplas, Jacob T
Published in PeerJ Computer Science (12.02.2018)
Published in PeerJ Computer Science (12.02.2018)
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Epidemiology of COVID-19 infections on routine polymerase chain reaction (PCR) and serology testing in Coastal Kenya
Nyagwange, James, Ndwiga, Leonard, Muteru, Kelvin, Wamae, Kevin, Tuju, James, Testing Team, Covid, Kutima, Bernadette, Gitonga, John, Karanja, Henry, Mugo, Daisy, Kasera, Kadondi, Amoth, Patrick, Murunga, Nickson, Babu, Lawrence, Otieno, Edward, Githinji, George, Nokes, D J, Tsofa, Benjamin, Orindi, Benedict, Barasa, Edwine, Warimwe, George, Agoti, Charles N, Bejon, Philip, Ochola-Oyier, Lynette Isabella
Published in Wellcome open research (2022)
Published in Wellcome open research (2022)
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Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics
BONNAL, Raoul J. P, AERTS, Jan, STROZZI, Francesco, SYME, Rob, VOS, Rutger, WENNBLOM, Trevor J, WOODCROFT, Ben J, KATAYAMA, Toshiaki, PRINS, Pjotr, GITHINJI, George, GOTO, Naohisa, MACLEAN, Dan, MILLER, Chase A, MISHIMA, Hiroyuki, PAGANI, Massimiliano, RAMIREZ-GONZALEZ, Ricardo, SMANT, Geert
Published in Bioinformatics (Oxford, England) (01.04.2012)
Published in Bioinformatics (Oxford, England) (01.04.2012)
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Enrichment approach for unbiased sequencing of respiratory syncytial virus directly from clinical samples
Waweru, Jacqueline Wahura, de Laurent, Zaydah, Kamau, Everlyn, Mohammed, Khadija Said, Gicheru, Elijah, Mutunga, Martin, Kibet, Caleb, Kinyua, Johnson, Nokes, D James, Sande, Charles, Githinji, George
Published in Wellcome open research (2021)
Published in Wellcome open research (2021)
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Journal Article
Detection of SARS-CoV-2 variant 501Y.V2 in Comoros Islands in January 2021
N Agoti, Charles, Githinji, George, S Mohammed, Khadija, W Lambisia, Arnold, R de Laurent, Zaydah, W Mburu, Maureen, M Ong'era, Edidah, M Morobe, John, Otieno, Edward, Abdou Azali, Hamza, Said Abdallah, Kamal, Diarra, Abdoulaye, Ahmed Yahaya, Ali, Borus, Peter, Gumede Moeletsi, Nicksy, Fred Athanasius, Dratibi, Tsofa, Benjamin, Bejon, Philip, James Nokes, D, Isabella Ochola-Oyier, Lynette
Published in Wellcome open research (2021)
Published in Wellcome open research (2021)
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Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis
Agoti, Charles N., Munywoki, Patrick K., Phan, My V. T., Otieno, James R., Kamau, Everlyn, Bett, Anne, Kombe, Ivy, Githinji, George, Medley, Graham F., Cane, Patricia A., Kellam, Paul, Cotten, Matthew, Nokes, D. James
Published in Virus Evolution (01.01.2017)
Published in Virus Evolution (01.01.2017)
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