Maftools: efficient and comprehensive analysis of somatic variants in cancer
Mayakonda, Anand, Lin, De-Chen, Assenov, Yassen, Plass, Christoph, Koeffler, H Phillip
Published in Genome research (01.11.2018)
Published in Genome research (01.11.2018)
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metaSPAdes: a new versatile metagenomic assembler
Nurk, Sergey, Meleshko, Dmitry, Korobeynikov, Anton, Pevzner, Pavel A
Published in Genome research (01.05.2017)
Published in Genome research (01.05.2017)
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Fast and accurate de novo genome assembly from long uncorrected reads
Vaser, Robert, Sović, Ivan, Nagarajan, Niranjan, Šikić, Mile
Published in Genome research (01.05.2017)
Published in Genome research (01.05.2017)
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HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads
Nurk, Sergey, Walenz, Brian P, Rhie, Arang, Vollger, Mitchell R, Logsdon, Glennis A, Grothe, Robert, Miga, Karen H, Eichler, Evan E, Phillippy, Adam M, Koren, Sergey
Published in Genome research (01.09.2020)
Published in Genome research (01.09.2020)
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GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens
Zhou, Zhemin, Alikhan, Nabil-Fareed, Sergeant, Martin J, Luhmann, Nina, Vaz, Cátia, Francisco, Alexandre P, Carriço, João André, Achtman, Mark
Published in Genome research (01.09.2018)
Published in Genome research (01.09.2018)
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Accurate and efficient detection of gene fusions from RNA sequencing data
Uhrig, Sebastian, Ellermann, Julia, Walther, Tatjana, Burkhardt, Pauline, Fröhlich, Martina, Hutter, Barbara, Toprak, Umut H, Neumann, Olaf, Stenzinger, Albrecht, Scholl, Claudia, Fröhling, Stefan, Brors, Benedikt
Published in Genome research (01.03.2021)
Published in Genome research (01.03.2021)
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Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid
Miller, Steve, Naccache, Samia N, Samayoa, Erik, Messacar, Kevin, Arevalo, Shaun, Federman, Scot, Stryke, Doug, Pham, Elizabeth, Fung, Becky, Bolosky, William J, Ingebrigtsen, Danielle, Lorizio, Walter, Paff, Sandra M, Leake, John A, Pesano, Rick, DeBiasi, Roberta, Dominguez, Samuel, Chiu, Charles Y
Published in Genome research (01.05.2019)
Published in Genome research (01.05.2019)
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Centrifuge: rapid and sensitive classification of metagenomic sequences
Kim, Daehwan, Song, Li, Breitwieser, Florian P, Salzberg, Steven L
Published in Genome research (01.12.2016)
Published in Genome research (01.12.2016)
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Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
Schneider, Valerie A, Graves-Lindsay, Tina, Howe, Kerstin, Bouk, Nathan, Chen, Hsiu-Chuan, Kitts, Paul A, Murphy, Terence D, Pruitt, Kim D, Thibaud-Nissen, Françoise, Albracht, Derek, Fulton, Robert S, Kremitzki, Milinn, Magrini, Vincent, Markovic, Chris, McGrath, Sean, Steinberg, Karyn Meltz, Auger, Kate, Chow, William, Collins, Joanna, Harden, Glenn, Hubbard, Timothy, Pelan, Sarah, Simpson, Jared T, Threadgold, Glen, Torrance, James, Wood, Jonathan M, Clarke, Laura, Koren, Sergey, Boitano, Matthew, Peluso, Paul, Li, Heng, Chin, Chen-Shan, Phillippy, Adam M, Durbin, Richard, Wilson, Richard K, Flicek, Paul, Eichler, Evan E, Church, Deanna M
Published in Genome research (01.05.2017)
Published in Genome research (01.05.2017)
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Diverse alternative back-splicing and alternative splicing landscape of circular RNAs
Zhang, Xiao-Ou, Dong, Rui, Zhang, Yang, Zhang, Jia-Lin, Luo, Zheng, Zhang, Jun, Chen, Ling-Ling, Yang, Li
Published in Genome research (01.09.2016)
Published in Genome research (01.09.2016)
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Accurate and complete genomes from metagenomes
Chen, Lin-Xing, Anantharaman, Karthik, Shaiber, Alon, Eren, A Murat, Banfield, Jillian F
Published in Genome research (01.03.2020)
Published in Genome research (01.03.2020)
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Enzymatic methyl sequencing detects DNA methylation at single-base resolution from picograms of DNA
Vaisvila, Romualdas, Ponnaluri, V.K. Chaithanya, Sun, Zhiyi, Langhorst, Bradley W., Saleh, Lana, Guan, Shengxi, Dai, Nan, Campbell, Matthew A., Sexton, Brittany S., Marks, Katherine, Samaranayake, Mala, Samuelson, James C., Church, Heidi E., Tamanaha, Esta, Corrêa, Ivan R., Pradhan, Sriharsa, Dimalanta, Eileen T., Evans, Thomas C., Williams, Louise, Davis, Theodore B.
Published in Genome research (01.07.2021)
Published in Genome research (01.07.2021)
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Direct determination of diploid genome sequences
Weisenfeld, Neil I, Kumar, Vijay, Shah, Preyas, Church, Deanna M, Jaffe, David B
Published in Genome research (01.05.2017)
Published in Genome research (01.05.2017)
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Microbial strain-level population structure and genetic diversity from metagenomes
Truong, Duy Tin, Tett, Adrian, Pasolli, Edoardo, Huttenhower, Curtis, Segata, Nicola
Published in Genome research (01.04.2017)
Published in Genome research (01.04.2017)
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