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A Continuous Extension of Gene Set Enrichment Analysis Using the Likelihood Ratio Test Statistics Identifies Vascular Endothelial Growth Factor as a Candidate Pathway for Alzheimer’s Disease via ITGA5
Mahzarnia, Ali, Lutz, Michael W., Badea, Alexandra
Published in Journal of Alzheimer's disease (01.01.2024)
Published in Journal of Alzheimer's disease (01.01.2024)
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Gene Set Enrichment Analysis in Zebrafish Embryos Is Susceptible to False-Positive Results in the Absence of Differentially Expressed Genes
Stead, John DH, Lee, Hyojin, Williams, Andrew, Ramírez, Sergio A Cortés, Atlas, Ella, Mennigen, Jan A, O’Brien, Jason M, Yauk, Carole
Published in Bioinformatics and biology insights (01.01.2025)
Published in Bioinformatics and biology insights (01.01.2025)
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Abstract P4-09-14: Analysis of breast cancer recurrence using gene set enrichment analysis
Praveen Kumar, A, Kovatich, AJ, Biancotto, A, Cheung, F, Davidson-Moncada, JK, Kvecher, L, Liu, J, Ru, Y, Kovatich, AW, Deyarmin, B, Fantacone-Campbell, JL, Hooke, JA, Raj Kumar, PK, Rui, H, Hu, H, Shriver, CD
Published in Cancer research (Chicago, Ill.) (15.02.2018)
Published in Cancer research (Chicago, Ill.) (15.02.2018)
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Transcriptomic Evidence of Immune Modulation in Subjects With Chronic Trypanosoma cruzi Infection
Ros-Lucas, Albert, Gabaldón-Figueira, Juan Carlos, Martínez-Peinado, Nieves, Losada-Galván, Irene, Posada, Elizabeth, Escabia, Elisa, Martín-Mur, Beatriz, Gut, Marta, Esteve-Codina, Anna, Gascón, Joaquim, Pinazo, María-Jesús, Alonso-Padilla, Julio
Published in The Journal of infectious diseases (16.12.2024)
Published in The Journal of infectious diseases (16.12.2024)
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Caveolin-1 Alleviates Diabetes-Associated Cognitive Dysfunction Through Modulating Neuronal Ferroptosis-Mediated Mitochondrial Homeostasis
Tang, Wenxin, Li, Yansong, He, Shuxuan, Jiang, Tao, Wang, Nan, Du, Mengyu, Cheng, Bo, Gao, Wei, Li, Yan, Wang, Qiang
Published in Antioxidants & redox signaling (01.11.2022)
Published in Antioxidants & redox signaling (01.11.2022)
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POS0341 DECONVOLUTION OF TRANSCRIPTOMICS CHANGES IN DEUCRAVACITINIB-TREATED SUBJECTS REVEALS NOVEL MECHANISTIC EFFECTS OF TYK2 INHIBITION IN LUPUS
Vital, E. M., Arriens, C., Kahlenberg, J. M., Crow, M. K., Saxena, A., Wu, C., Hu, Y., Hobar, C., Coles, A., Catlett, I. M.
Published in Annals of the rheumatic diseases (01.06.2024)
Published in Annals of the rheumatic diseases (01.06.2024)
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Altered microvasculature in pancreatic islets from subjects with type 1 diabetes
Granlund, Louise, Hedin, Anders, Korsgren, Olle, Skog, Oskar, Lundberg, Marcus
Published in PloS one (31.10.2022)
Published in PloS one (31.10.2022)
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Gene Set Enrichment Analysis of Bronchial Alveolar Lavage Fluid Identifies Key Innate Immune Pathways in Primary Graft Dysfunction after Lung Transplantation
Cantu, E., Lederer, D.J., Meyer, K.C., Milewski, R.K., Suzuki, Y., Shah, R.J., Diamond, J.M., Meyer, N.J., Tobias, J.W., Baldwin, D.A., Van Deerlin, V.M., Olthoff, K.M., Shaked, A., Christie, J.D.
Published in The Journal of heart and lung transplantation (01.04.2013)
Published in The Journal of heart and lung transplantation (01.04.2013)
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Gene Expression Profiles of Beta-Cell Enriched Tissue Obtained by Laser Capture Microdissection from Subjects with Type 2 Diabetes
Marselli, Lorella, Thorne, Jeffrey, Dahiya, Sonika, Sgroi, Dennis C., Sharma, Arun, Bonner-Weir, Susan, Marchetti, Piero, Weir, Gordon C.
Published in PloS one (13.07.2010)
Published in PloS one (13.07.2010)
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AB0502 CELLULAR AND PROTEOMIC CHANGES FOLLOWING ADMINISTRATION OF PERESOLIMAB, IN A PHASE 2A TRIAL IN RHEUMATOID ARTHRITIS
Benschop, R., Tuttle, J., Emery, P., Preuss, C., Daniels, M., Chang, C. Y., Yachi, P., Nirula, A.
Published in Annals of the rheumatic diseases (01.06.2024)
Published in Annals of the rheumatic diseases (01.06.2024)
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Integrating mRNA and miRNA Weighted Gene Co-Expression Networks with eQTLs in the Nucleus Accumbens of Subjects with Alcohol Dependence
Mamdani, Mohammed, Williamson, Vernell, McMichael, Gowon O., Blevins, Tana, Aliev, Fazil, Adkins, Amy, Hack, Laura, Bigdeli, Tim, D. van der Vaart, Andrew, Web, Bradley Todd, Bacanu, Silviu-Alin, Kalsi, Gursharan, Kendler, Kenneth S., Miles, Michael F., Dick, Danielle, Riley, Brien P., Dumur, Catherine, Vladimirov, Vladimir I.
Published in PloS one (18.09.2015)
Published in PloS one (18.09.2015)
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Identification of hub genes in the subacute spinal cord injury in rats
Yan, Lei, Fu, Jiawei, Dong, Xiong, Chen, Baishen, Hong, Hongxiang, Cui, Zhiming
Published in BMC neuroscience (27.08.2022)
Published in BMC neuroscience (27.08.2022)
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Circulating microRNAs, Vascular Risk, and Physical Activity in Spinal Cord-Injured Subjects
Paim, Layde R., Schreiber, Roberto, de Rossi, Guilherme, Matos-Souza, José R., Costa e Silva, Anselmo de A., Calegari, Décio Roberto, Cheng, Susan, Marques, Francine Z., Sposito, Andrei C., Gorla, José I., Cliquet, Alberto, Nadruz, Wilson
Published in Journal of neurotrauma (19.03.2019)
Published in Journal of neurotrauma (19.03.2019)
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3-D culture of human lung fibroblasts decreases proliferative and increases extracellular matrix remodeling genes
Migulina, Nataliya, de Hilster, Roderick H. J., Bartel, Sabine, Vedder, Rolf H. J., van den Berge, Maarten, Nagelkerke, Anika, Timens, Wim, Harmsen, Martin C., Hylkema, Machteld N., Brandsma, Corry-Anke, Burgess, Janette K.
Published in American Journal of Physiology: Cell Physiology (01.01.2024)
Published in American Journal of Physiology: Cell Physiology (01.01.2024)
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Large-scale metagenomic analysis of oral microbiomes reveals markers for autism spectrum disorders
Manghi, Paolo, Filosi, Michele, Zolfo, Moreno, Casten, Lucas G., Garcia-Valiente, Albert, Mattevi, Stefania, Heidrich, Vitor, Golzato, Davide, Perini, Samuel, Thomas, Andrew M., Montalbano, Simone, Cancellieri, Samuele, Waldron, Levi, Hall, Jacob B., Xu, Simon, Volfovsky, Natalia, Green Snyder, LeeAnne, Feliciano, Pamela, Asnicar, Francesco, Valles-Colomer, Mireia, Michaelson, Jacob J., Segata, Nicola, Domenici, Enrico
Published in Nature communications (11.11.2024)
Published in Nature communications (11.11.2024)
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AB0971 OXIDATIVE STRESS AND INFLAMMATION IN AXIAL SPONDYLOARTHRITIS: PROFILING OF PERIPHERAL BLOOD MONONUCLEAR CELLS
Lopalco, G., DI Pietro, L., Privitera, A., Bonacci, P., Musso, N., Natuzzi, D., Bizzoca, R., Del Vescovo, S., Caruso, G., Iannone, F.
Published in Annals of the rheumatic diseases (01.06.2024)
Published in Annals of the rheumatic diseases (01.06.2024)
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Bleomycin Induces Molecular Changes Directly Relevant to Idiopathic Pulmonary Fibrosis: A Model for “Active” Disease
Peng, Ruoqi, Sridhar, Sriram, Tyagi, Gaurav, Phillips, Jonathan E., Garrido, Rosario, Harris, Paul, Burns, Lisa, Renteria, Lorena, Woods, John, Chen, Leena, Allard, John, Ravindran, Palanikumar, Bitter, Hans, Liang, Zhenmin, Hogaboam, Cory M., Kitson, Chris, Budd, David C., Fine, Jay S., Bauer, Carla MT, Stevenson, Christopher S.
Published in PloS one (02.04.2013)
Published in PloS one (02.04.2013)
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Hematological and gene co-expression network analyses of high-risk beef cattle defines immunological mechanisms and biological complexes involved in bovine respiratory disease and weight gain
Scott, Matthew A., Woolums, Amelia R., Swiderski, Cyprianna E., Finley, Abigail, Perkins, Andy D., Nanduri, Bindu, Karisch, Brandi B.
Published in PloS one (03.11.2022)
Published in PloS one (03.11.2022)
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