Loading…
Bulk tissue cell type deconvolution with multi-subject single-cell expression reference
Wang, Xuran, Park, Jihwan, Susztak, Katalin, Zhang, Nancy R., Li, Mingyao
Published in Nature communications (22.01.2019)
Published in Nature communications (22.01.2019)
Get full text
Journal Article
Loading…
Single-cell transcriptome analysis of human skin identifies novel fibroblast subpopulation and enrichment of immune subsets in atopic dermatitis
He, Helen, Suryawanshi, Hemant, Morozov, Pavel, Gay-Mimbrera, Jesús, Del Duca, Ester, Kim, Hyun Je, Kameyama, Naoya, Estrada, Yeriel, Der, Evan, Krueger, James G., Ruano, Juan, Tuschl, Thomas, Guttman-Yassky, Emma
Published in Journal of allergy and clinical immunology (01.06.2020)
Published in Journal of allergy and clinical immunology (01.06.2020)
Get full text
Journal Article
Loading…
Tubular cell and keratinocyte single-cell transcriptomics applied to lupus nephritis reveal type I IFN and fibrosis relevant pathways
Der, Evan, Suryawanshi, Hemant, Morozov, Pavel, Kustagi, Manjunath, Goilav, Beatrice, Ranabothu, Saritha, Izmirly, Peter, Clancy, Robert, Belmont, H. Michael, Koenigsberg, Mordecai, Mokrzycki, Michele, Rominieki, Helen, Graham, Jay A., Rocca, Juan P., Bornkamp, Nicole, Jordan, Nicole, Schulte, Emma, Wu, Ming, Pullman, James, Slowikowski, Kamil, Raychaudhuri, Soumya, Guthridge, Joel, James, Judith, Buyon, Jill, Tuschl, Thomas, Putterman, Chaim
Published in Nature immunology (01.07.2019)
Published in Nature immunology (01.07.2019)
Get full text
Journal Article
Loading…
Gene expression and in situ protein profiling of candidate SARS-CoV-2 receptors in human airway epithelial cells and lung tissue
Aguiar, Jennifer A., Tremblay, Benjamin J-M., Mansfield, Michael J., Woody, Owen, Lobb, Briallen, Banerjee, Arinjay, Chandiramohan, Abiram, Tiessen, Nicholas, Cao, Quynh, Dvorkin-Gheva, Anna, Revill, Spencer, Miller, Matthew S., Carlsten, Christopher, Organ, Louise, Joseph, Chitra, John, Alison, Hanson, Paul, Austin, Richard C., McManus, Bruce M., Jenkins, Gisli, Mossman, Karen, Ask, Kjetil, Doxey, Andrew C., Hirota, Jeremy A.
Published in The European respiratory journal (01.09.2020)
Published in The European respiratory journal (01.09.2020)
Get full text
Journal Article
Loading…
COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
Yang, Sunmo, Kim, Chan Yeong, Hwang, Sohyun, Kim, Eiru, Kim, Hyojin, Shim, Hongseok, Lee, Insuk
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
Get full text
Journal Article
Loading…
Developmental barcoding of whole mouse via homing CRISPR
Kalhor, Reza, Kalhor, Kian, Mejia, Leo, Leeper, Kathleen, Graveline, Amanda, Mali, Prashant, Church, George M.
Published in Science (American Association for the Advancement of Science) (31.08.2018)
Published in Science (American Association for the Advancement of Science) (31.08.2018)
Get full text
Journal Article
Loading…
Epigenomic-Guided Mass Cytometry Profiling Reveals Disease-Specific Features of Exhausted CD8 T Cells
Bengsch, Bertram, Ohtani, Takuya, Khan, Omar, Setty, Manu, Manne, Sasikanth, O’Brien, Shaun, Gherardini, Pier Federico, Herati, Ramin Sedaghat, Huang, Alexander C., Chang, Kyong-Mi, Newell, Evan W., Bovenschen, Niels, Pe’er, Dana, Albelda, Steven M., Wherry, E. John
Published in Immunity (Cambridge, Mass.) (15.05.2018)
Published in Immunity (Cambridge, Mass.) (15.05.2018)
Get full text
Journal Article
Loading…
Integrative transcriptome analyses of the aging brain implicate altered splicing in Alzheimer’s disease susceptibility
Raj, Towfique, Li, Yang I., Wong, Garrett, Humphrey, Jack, Wang, Minghui, Ramdhani, Satesh, Wang, Ying-Chih, Ng, Bernard, Gupta, Ishaan, Haroutunian, Vahram, Schadt, Eric E., Young-Pearse, Tracy, Mostafavi, Sara, Zhang, Bin, Sklar, Pamela, Bennett, David A., De Jager, Philip L.
Published in Nature genetics (01.11.2018)
Published in Nature genetics (01.11.2018)
Get full text
Journal Article
Loading…
Characterization of the COPD alveolar niche using single-cell RNA sequencing
Sauler, Maor, McDonough, John E., Adams, Taylor S., Kothapalli, Neeharika, Barnthaler, Thomas, Werder, Rhiannon B., Schupp, Jonas C., Nouws, Jessica, Robertson, Matthew J., Coarfa, Cristian, Yang, Tao, Chioccioli, Maurizio, Omote, Norihito, Cosme, Carlos, Poli, Sergio, Ayaub, Ehab A., Chu, Sarah G., Jensen, Klaus H., Gomez, Jose L., Britto, Clemente J., Raredon, Micha Sam B., Niklason, Laura E., Wilson, Andrew A., Timshel, Pascal N., Kaminski, Naftali, Rosas, Ivan O.
Published in Nature communications (25.01.2022)
Published in Nature communications (25.01.2022)
Get full text
Journal Article
Loading…
Loading…
Hepatic transcriptome signatures in patients with varying degrees of nonalcoholic fatty liver disease compared with healthy normal-weight individuals
Suppli, Malte P., Rigbolt, Kristoffer T. G., Veidal, Sanne S., Heebøll, Sara, Eriksen, Peter Lykke, Demant, Mia, Bagger, Jonatan I., Nielsen, Jens Christian, Oró, Denise, Thrane, Sebastian W., Lund, Asger, Strandberg, Charlotte, Kønig, Merete J., Vilsbøll, Tina, Vrang, Niels, Thomsen, Karen L., Grønbæk, Henning, Jelsing, Jacob, Hansen, Henrik H., Knop, Filip K.
Published in American journal of physiology: Gastrointestinal and liver physiology (01.04.2019)
Published in American journal of physiology: Gastrointestinal and liver physiology (01.04.2019)
Get full text
Journal Article
Loading…
SUCNR1 controls an anti-inflammatory program in macrophages to regulate the metabolic response to obesity
Keiran, Noelia, Ceperuelo-Mallafré, Victoria, Calvo, Enrique, Hernández-Alvarez, Maria Isabel, Ejarque, Miriam, Núñez-Roa, Catalina, Horrillo, Daniel, Maymó-Masip, Elsa, Rodríguez, M. Mar, Fradera, Rosa, de la Rosa, Juan Vladimir, Jorba, Rosa, Megia, Ana, Zorzano, Antonio, Medina-Gómez, Gema, Serena, Carolina, Castrillo, Antonio, Vendrell, Joan, Fernández-Veledo, Sonia
Published in Nature immunology (01.05.2019)
Published in Nature immunology (01.05.2019)
Get full text
Journal Article
Loading…
A Transcriptomic Method to Determine Airway Immune Dysfunction in T2-High and T2-Low Asthma
Peters, Michael C., Ringel, Lando, Dyjack, Nathan, Herrin, Rachelle, Woodruff, Prescott G., Rios, Cydney, O’Connor, Brian, Fahy, John V., Seibold, Max A.
Published in American journal of respiratory and critical care medicine (15.02.2019)
Published in American journal of respiratory and critical care medicine (15.02.2019)
Get full text
Journal Article
Loading…
Loading…
Early Detection of Lung Cancer Using DNA Promoter Hypermethylation in Plasma and Sputum
Hulbert, Alicia, Jusue-Torres, Ignacio, Stark, Alejandro, Chen, Chen, Rodgers, Kristen, Lee, Beverly, Griffin, Candace, Yang, Andrew, Huang, Peng, Wrangle, John, Belinsky, Steven A., Wang, Tza-Huei, Yang, Stephen C., Baylin, Stephen B., Brock, Malcolm V., Herman, James G.
Published in Clinical cancer research (15.04.2017)
Published in Clinical cancer research (15.04.2017)
Get full text
Journal Article
Loading…
Shared and Distinct Aspects of the Sepsis Transcriptomic Response to Fecal Peritonitis and Pneumonia
Burnham, Katie L., Davenport, Emma E., Radhakrishnan, Jayachandran, Humburg, Peter, Gordon, Anthony C., Hutton, Paula, Svoren-Jabalera, Eduardo, Garrard, Christopher, Hill, Adrian V. S., Hinds, Charles J., Knight, Julian C.
Published in American journal of respiratory and critical care medicine (01.08.2017)
Published in American journal of respiratory and critical care medicine (01.08.2017)
Get full text
Journal Article
Loading…
Noninvasive in vivo monitoring of tissue-specific global gene expression in humans
Koh, Winston, Pan, Wenying, Gawad, Charles, Fan, H. Christina, Kerchner, Geoffrey A., Wyss-Coray, Tony, Blumenfeld, Yair J., El-Sayed, Yasser Y., Quake, Stephen R.
Published in Proceedings of the National Academy of Sciences - PNAS (20.05.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (20.05.2014)
Get full text
Journal Article
Loading…
Full‐length transcriptome sequences and splice variants obtained by a combination of sequencing platforms applied to different root tissues of Salvia miltiorrhiza and tanshinone biosynthesis
Xu, Zhichao, Peters, Reuben J., Weirather, Jason, Luo, Hongmei, Liao, Baosheng, Zhang, Xin, Zhu, Yingjie, Ji, Aijia, Zhang, Bing, Hu, Songnian, Au, Kin Fai, Song, Jingyuan, Chen, Shilin
Published in The Plant journal : for cell and molecular biology (01.06.2015)
Published in The Plant journal : for cell and molecular biology (01.06.2015)
Get full text
Journal Article
Loading…
Differentially expressed genes reflect disease-induced rather than disease-causing changes in the transcriptome
Porcu, Eleonora, Sadler, Marie C., Lepik, Kaido, Auwerx, Chiara, Wood, Andrew R., Weihs, Antoine, Sleiman, Maroun S. Bou, Ribeiro, Diogo M., Bandinelli, Stefania, Tanaka, Toshiko, Nauck, Matthias, Völker, Uwe, Delaneau, Olivier, Metspalu, Andres, Teumer, Alexander, Frayling, Timothy, Santoni, Federico A., Reymond, Alexandre, Kutalik, Zoltán
Published in Nature communications (24.09.2021)
Published in Nature communications (24.09.2021)
Get full text
Journal Article
Loading…
Dysregulated transcriptional responses to SARS-CoV-2 in the periphery
McClain, Micah T., Constantine, Florica J., Henao, Ricardo, Liu, Yiling, Tsalik, Ephraim L., Burke, Thomas W., Steinbrink, Julie M., Petzold, Elizabeth, Nicholson, Bradly P., Rolfe, Robert, Kraft, Bryan D., Kelly, Matthew S., Saban, Daniel R., Yu, Chen, Shen, Xiling, Ko, Emily M., Sempowski, Gregory D., Denny, Thomas N., Ginsburg, Geoffrey S., Woods, Christopher W.
Published in Nature communications (17.02.2021)
Published in Nature communications (17.02.2021)
Get full text
Journal Article