The SAMPL3 blind prediction challenge: transfer energy overview
Geballe, Matthew T., Guthrie, J. Peter
Published in Journal of computer-aided molecular design (01.05.2012)
Published in Journal of computer-aided molecular design (01.05.2012)
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Journal Article
Blind prediction of host–guest binding affinities: a new SAMPL3 challenge
Muddana, Hari S., Daniel Varnado, C., Bielawski, Christopher W., Urbach, Adam R., Isaacs, Lyle, Geballe, Matthew T., Gilson, Michael K.
Published in Journal of computer-aided molecular design (01.05.2012)
Published in Journal of computer-aided molecular design (01.05.2012)
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Journal Article
Structural Determinants of D-Cycloserine Efficacy at the NR1/NR2C NMDA Receptors
Dravid, Shashank M, Burger, Pieter B, Prakash, Anand, Geballe, Matthew T, Yadav, Roopali, Le, Phuong, Vellano, Kimberly, Snyder, James P, Traynelis, Stephen F
Published in The Journal of neuroscience (17.02.2010)
Published in The Journal of neuroscience (17.02.2010)
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Journal Article
Subunit-Specific Agonist Activity at NR2A-, NR2B-, NR2C-, and NR2D-Containing N-Methyl-d-aspartate Glutamate Receptors
Erreger, Kevin, Geballe, Matthew T, Kristensen, Anders, Chen, Philip E, Hansen, Kasper B, Lee, C Justin, Yuan, Hongjie, Le, Phuong, Lyuboslavsky, Polina N, Micale, Nicola, Jørgensen, Lars, Clausen, Rasmus P, Wyllie, David J A, Snyder, James P, Traynelis, Stephen F
Published in Molecular pharmacology (01.10.2007)
Published in Molecular pharmacology (01.10.2007)
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Journal Article
Modulation of glycine potency in rat recombinant NMDA receptors containing chimeric NR2A/2D subunits expressed in Xenopus laevis oocytes
Chen, Philip E., Geballe, Matthew T., Katz, Elyse, Erreger, Kevin, Livesey, Matthew R., O'Toole, Kate K., Le, Phuong, Lee, C. Justin, Snyder, James P., Traynelis, Stephen F., Wyllie, David J. A.
Published in The Journal of physiology (01.01.2008)
Published in The Journal of physiology (01.01.2008)
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Journal Article
Structural Features of the Glutamate Binding Site in Recombinant NR1/NR2A N-Methyl-d-aspartate Receptors Determined by Site-Directed Mutagenesis and Molecular Modeling
Chen, Philip E, Geballe, Matthew T, Stansfeld, Phillip J, Johnston, Alexander R, Yuan, Hongjie, Jacob, Amanda L, Snyder, James P, Traynelis, Stephen F, Wyllie, David J A
Published in Molecular pharmacology (01.05.2005)
Published in Molecular pharmacology (01.05.2005)
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Journal Article
SAMPL2 challenge: prediction of solvation energies and tautomer ratios
Skillman, A. Geoffrey, Geballe, Matthew T., Nicholls, Anthony
Published in Journal of computer-aided molecular design (01.04.2010)
Published in Journal of computer-aided molecular design (01.04.2010)
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Journal Article
The Serine Protease Plasmin Cleaves the Amino-terminal Domain of the NR2A Subunit to Relieve Zinc Inhibition of the N-Methyl-d-aspartate Receptors
Yuan, Hongjie, Vance, Katie M., Junge, Candice E., Geballe, Matthew T., Snyder, James P., Hepler, John R., Yepes, Manuel, Low, Chian-Ming, Traynelis, Stephen F.
Published in The Journal of biological chemistry (08.05.2009)
Published in The Journal of biological chemistry (08.05.2009)
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Journal Article
Efficient calculation of SAMPL4 hydration free energies using OMEGA, SZYBKI, QUACPAC, and Zap TK
Ellingson, Benjamin A., Geballe, Matthew T., Wlodek, Stanislaw, Bayly, Christopher I., Skillman, A. Geoffrey, Nicholls, Anthony
Published in Journal of computer-aided molecular design (01.03.2014)
Published in Journal of computer-aided molecular design (01.03.2014)
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Journal Article
Cyclostreptin and Microtubules: Is a Low-Affinity Binding Site Required
Prussia, Andrew J, Yang, Yutao, Geballe, Matthew T, Snyder, James P
Published in Chembiochem : a European journal of chemical biology (04.01.2010)
Published in Chembiochem : a European journal of chemical biology (04.01.2010)
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Journal Article
SiteHopper - a unique tool for binding site comparison
Batista, Jose, Hawkins, Paul CD, Tolbert, Robert, Geballe, Matthew T
Published in Journal of cheminformatics (11.03.2014)
Published in Journal of cheminformatics (11.03.2014)
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Journal Article
The application of statistical methods to cognate docking: A path forward?
Stahl, Gunther, Hawkins, Paul CD, McGann, Mark, Geballe, Matthew T, Warren, Gregory L
Published in Journal of cheminformatics (11.03.2014)
Published in Journal of cheminformatics (11.03.2014)
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Journal Article
Enhanced Microtubule Binding and Tubulin Assembly Properties of Conformationally Constrained Paclitaxel Derivatives
Shanker, Natasha, Kingston, David G. I, Ganesh, Thota, Yang, Chao, Alcaraz, Ana A, Geballe, Matthew T, Banerjee, Abhijit, McGee, Dennis, Snyder, James P, Bane, Susan
Published in Biochemistry (Easton) (16.10.2007)
Published in Biochemistry (Easton) (16.10.2007)
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Journal Article
A binding site tyrosine shapes desensitization kinetics and agonist potency at GluR2. A mutagenic, kinetic, and crystallographic study
Holm, Mai Marie, Naur, Peter, Vestergaard, Bente, Geballe, Matthew T, Gajhede, Michael, Kastrup, Jette S, Traynelis, Stephen F, Egebjerg, Jan
Published in The Journal of biological chemistry (21.10.2005)
Published in The Journal of biological chemistry (21.10.2005)
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Journal Article
Glutamate receptors: variation in structure–function coupling
Kristensen, Anders S., Geballe, Matthew T., Snyder, James P., Traynelis, Stephen F.
Published in Trends in pharmacological sciences (Regular ed.) (01.02.2006)
Published in Trends in pharmacological sciences (Regular ed.) (01.02.2006)
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Journal Article
A Binding Site Tyrosine Shapes Desensitization Kinetics and Agonist Potency at GluR2
Holm, Mai Marie, Naur, Peter, Vestergaard, Bente, Geballe, Matthew T., Gajhede, Michael, Kastrup, Jette S., Traynelis, Stephen F., Egebjerg, Jan
Published in The Journal of biological chemistry (21.10.2005)
Published in The Journal of biological chemistry (21.10.2005)
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Journal Article