An atlas of dynamic chromatin landscapes in mouse fetal development
Gorkin, David U, Barozzi, Iros, Zhao, Yuan, Zhang, Yanxiao, Huang, Hui, Lee, Ah Young, Li, Bin, Chiou, Joshua, Wildberg, Andre, Ding, Bo, Zhang, Bo, Wang, Mengchi, Strattan, J Seth, Davidson, Jean M, Qiu, Yunjiang, Afzal, Veena, Akiyama, Jennifer A, Plajzer-Frick, Ingrid, Novak, Catherine S, Kato, Momoe, Garvin, Tyler H, Pham, Quan T, Harrington, Anne N, Mannion, Brandon J, Lee, Elizabeth A, Fukuda-Yuzawa, Yoko, He, Yupeng, Preissl, Sebastian, Chee, Sora, Han, Jee Yun, Williams, Brian A, Trout, Diane, Amrhein, Henry, Yang, Hongbo, Cherry, J Michael, Wang, Wei, Gaulton, Kyle, Ecker, Joseph R, Shen, Yin, Dickel, Diane E, Visel, Axel, Pennacchio, Len A, Ren, Bing
Published in Nature (London) (30.07.2020)
Published in Nature (London) (30.07.2020)
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Progressive Loss of Function in a Limb Enhancer during Snake Evolution
Kvon, Evgeny Z., Kamneva, Olga K., Melo, Uirá S., Barozzi, Iros, Osterwalder, Marco, Mannion, Brandon J., Tissières, Virginie, Pickle, Catherine S., Plajzer-Frick, Ingrid, Lee, Elizabeth A., Kato, Momoe, Garvin, Tyler H., Akiyama, Jennifer A., Afzal, Veena, Lopez-Rios, Javier, Rubin, Edward M., Dickel, Diane E., Pennacchio, Len A., Visel, Axel
Published in Cell (20.10.2016)
Published in Cell (20.10.2016)
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Ultraconserved Enhancers Are Required for Normal Development
Dickel, Diane E., Ypsilanti, Athena R., Pla, Ramón, Zhu, Yiwen, Barozzi, Iros, Mannion, Brandon J., Khin, Yupar S., Fukuda-Yuzawa, Yoko, Plajzer-Frick, Ingrid, Pickle, Catherine S., Lee, Elizabeth A., Harrington, Anne N., Pham, Quan T., Garvin, Tyler H., Kato, Momoe, Osterwalder, Marco, Akiyama, Jennifer A., Afzal, Veena, Rubenstein, John L.R., Pennacchio, Len A., Visel, Axel
Published in Cell (25.01.2018)
Published in Cell (25.01.2018)
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A reference methylome database and analysis pipeline to facilitate integrative and comparative epigenomics
Song, Qiang, Decato, Benjamin, Hong, Elizabeth E, Zhou, Meng, Fang, Fang, Qu, Jianghan, Garvin, Tyler, Kessler, Michael, Zhou, Jun, Smith, Andrew D
Published in PloS one (06.12.2013)
Published in PloS one (06.12.2013)
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Comprehensive In Vivo Interrogation Reveals Phenotypic Impact of Human Enhancer Variants
Kvon, Evgeny Z., Zhu, Yiwen, Kelman, Guy, Novak, Catherine S., Plajzer-Frick, Ingrid, Kato, Momoe, Garvin, Tyler H., Pham, Quan, Harrington, Anne N., Hunter, Riana D., Godoy, Janeth, Meky, Eman M., Akiyama, Jennifer A., Afzal, Veena, Tran, Stella, Escande, Fabienne, Gilbert-Dussardier, Brigitte, Jean-Marçais, Nolwenn, Hudaiberdiev, Sanjarbek, Ovcharenko, Ivan, Dobbs, Matthew B., Gurnett, Christina A., Manouvrier-Hanu, Sylvie, Petit, Florence, Visel, Axel, Dickel, Diane E., Pennacchio, Len A.
Published in Cell (19.03.2020)
Published in Cell (19.03.2020)
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Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line
Nattestad, Maria, Goodwin, Sara, Ng, Karen, Baslan, Timour, Sedlazeck, Fritz J, Rescheneder, Philipp, Garvin, Tyler, Fang, Han, Gurtowski, James, Hutton, Elizabeth, Tseng, Elizabeth, Chin, Chen-Shan, Beck, Timothy, Sundaravadanam, Yogi, Kramer, Melissa, Antoniou, Eric, McPherson, John D, Hicks, James, McCombie, W Richard, Schatz, Michael C
Published in Genome research (01.08.2018)
Published in Genome research (01.08.2018)
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Supervised enhancer prediction with epigenetic pattern recognition and targeted validation
Sethi, Anurag, Gu, Mengting, Gumusgoz, Emrah, Chan, Landon, Yan, Koon-Kiu, Rozowsky, Joel, Barozzi, Iros, Afzal, Veena, Akiyama, Jennifer A, Plajzer-Frick, Ingrid, Yan, Chengfei, Novak, Catherine S, Kato, Momoe, Garvin, Tyler H, Pham, Quan, Harrington, Anne, Mannion, Brandon J, Lee, Elizabeth A, Fukuda-Yuzawa, Yoko, Visel, Axel, Dickel, Diane E, Yip, Kevin Y, Sutton, Richard, Pennacchio, Len A, Gerstein, Mark
Published in Nature methods (01.08.2020)
Published in Nature methods (01.08.2020)
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Genome-wide compendium and functional assessment of in vivo heart enhancers
Dickel, Diane E, Barozzi, Iros, Zhu, Yiwen, Fukuda-Yuzawa, Yoko, Osterwalder, Marco, Mannion, Brandon J, May, Dalit, Spurrell, Cailyn H, Plajzer-Frick, Ingrid, Pickle, Catherine S, Lee, Elizabeth, Garvin, Tyler H, Kato, Momoe, Akiyama, Jennifer A, Afzal, Veena, Lee, Ah Young, Gorkin, David U, Ren, Bing, Rubin, Edward M, Visel, Axel, Pennacchio, Len A
Published in Nature communications (05.10.2016)
Published in Nature communications (05.10.2016)
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Limb-Enhancer Genie: An accessible resource of accurate enhancer predictions in the developing limb
Monti, Remo, Barozzi, Iros, Osterwalder, Marco, Lee, Elizabeth, Kato, Momoe, Garvin, Tyler H, Plajzer-Frick, Ingrid, Pickle, Catherine S, Akiyama, Jennifer A, Afzal, Veena, Beerenwinkel, Niko, Dickel, Diane E, Visel, Axel, Pennacchio, Len A
Published in PLoS computational biology (01.08.2017)
Published in PLoS computational biology (01.08.2017)
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Recurrent noncoding regulatory mutations in pancreatic ductal adenocarcinoma
Feigin, Michael E, Garvin, Tyler, Bailey, Peter, Waddell, Nicola, Chang, David K, Kelley, David R, Shuai, Shimin, Gallinger, Steven, McPherson, John D, Grimmond, Sean M, Khurana, Ekta, Stein, Lincoln D, Biankin, Andrew V, Schatz, Michael C, Tuveson, David A
Published in Nature genetics (01.06.2017)
Published in Nature genetics (01.06.2017)
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Enhancer redundancy provides phenotypic robustness in mammalian development
Osterwalder, Marco, Barozzi, Iros, Tissières, Virginie, Fukuda-Yuzawa, Yoko, Mannion, Brandon J, Afzal, Sarah Y, Lee, Elizabeth A, Zhu, Yiwen, Plajzer-Frick, Ingrid, Pickle, Catherine S, Kato, Momoe, Garvin, Tyler H, Pham, Quan T, Harrington, Anne N, Akiyama, Jennifer A, Afzal, Veena, Lopez-Rios, Javier, Dickel, Diane E, Visel, Axel, Pennacchio, Len A
Published in Nature (London) (08.02.2018)
Published in Nature (London) (08.02.2018)
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Genome-wide fetalization of enhancer architecture in heart disease
Spurrell, Cailyn H., Barozzi, Iros, Kosicki, Michael, Mannion, Brandon J., Blow, Matthew J., Fukuda-Yuzawa, Yoko, Slaven, Neil, Afzal, Sarah Y., Akiyama, Jennifer A., Afzal, Veena, Tran, Stella, Plajzer-Frick, Ingrid, Novak, Catherine S., Kato, Momoe, Lee, Elizabeth A., Garvin, Tyler H., Pham, Quan T., Kronshage, Anne N., Lisgo, Steven, Bristow, James, Cappola, Thomas P., Morley, Michael P., Margulies, Kenneth B., Pennacchio, Len A., Dickel, Diane E., Visel, Axel
Published in Cell reports (Cambridge) (20.09.2022)
Published in Cell reports (Cambridge) (20.09.2022)
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Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development
Gorkin, David U, Barozzi, Iros, Zhao, Yuan, Zhang, Yanxiao, Huang, Hui, Lee, Ah Young, Li, Bin, Chiou, Joshua, Wildberg, Andre, Ding, Bo, Zhang, Bo, Wang, Mengchi, Strattan, J Seth, Davidson, Jean M, Qiu, Yunjiang, Afzal, Veena, Akiyama, Jennifer A, Plajzer-Frick, Ingrid, Novak, Catherine S, Kato, Momoe, Garvin, Tyler H, Pham, Quan T, Harrington, Anne N, Mannion, Brandon J, Lee, Elizabeth A, Fukuda-Yuzawa, Yoko, He, Yupeng, Preissl, Sebastian, Chee, Sora, Han, Jee Yun, Williams, Brian A, Trout, Diane, Amrhein, Henry, Yang, Hongbo, Cherry, J Michael, Wang, Wei, Gaulton, Kyle, Ecker, Joseph R, Shen, Yin, Dickel, Diane E, Visel, Axel, Pennacchio, Len A, Ren, Bing
Published in Nature (London) (21.01.2021)
Published in Nature (London) (21.01.2021)
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Journal Article
Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development
Gorkin, David U, Barozzi, Iros, Zhao, Yuan, Zhang, Yanxiao, Huang, Hui, Lee, Ah Young, Li, Bin, Chiou, Joshua, Wildberg, Andre, Ding, Bo, Zhang, Bo, Wang, Mengchi, Strattan, J Seth, Davidson, Jean M, Qiu, Yunjiang, Afzal, Veena, Akiyama, Jennifer A, Plajzer-Frick, Ingrid, Novak, Catherine S, Kato, Momoe, Garvin, Tyler H, Pham, Quan T, Harrington, Anne N, Mannion, Brandon J, Lee, Elizabeth A, Fukuda-Yuzawa, Yoko, He, Yupeng, Preissl, Sebastian, Chee, Sora, Han, Jee Yun, Williams, Brian A, Trout, Diane, Amrhein, Henry, Yang, Hongbo, Cherry, J Michael, Wang, Wei, Gaulton, Kyle, Ecker, Joseph R, Shen, Yin, Dickel, Diane E, Visel, Axel, Pennacchio, Len A, Ren, Bing
Published in Nature (London) (29.10.2020)
Published in Nature (London) (29.10.2020)
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TGF-β reduces DNA ds-break repair mechanisms to heighten genetic diversity and adaptability of CD44+/CD24- cancer cells
Pal, Debjani, Pertot, Anja, Shirole, Nitin H, Yao, Zhan, Anaparthy, Naishitha, Garvin, Tyler, Cox, Hilary, Chang, Kenneth, Rollins, Fred, Kendall, Jude, Edwards, Leyla, Singh, Vijay A, Stone, Gary C, Schatz, Michael C, Hicks, James, Hannon, Gregory J, Sordella, Raffaella
Published in eLife (16.01.2017)
Published in eLife (16.01.2017)
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An anchored chromosome‐scale genome assembly of spinach improves annotation and reveals extensive gene rearrangements in euasterids
Hulse‐Kemp, Amanda M, Bostan, Hamed, Chen, Shiyu, Ashrafi, Hamid, Stoffel, Kevin, Sanseverino, Walter, Li, Linzhou, Cheng, Shifeng, Schatz, Michael C., Garvin, Tyler, du Toit, Lindsey J., Tseng, Elizabeth, Chin, Jason, Iorizzo, Massimo, Van Deynze, Allen
Published in The plant genome (01.07.2021)
Published in The plant genome (01.07.2021)
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Interactive analysis and assessment of single-cell copy-number variations
Garvin, Tyler, Aboukhalil, Robert, Kendall, Jude, Baslan, Timour, Atwal, Gurinder S, Hicks, James, Wigler, Michael, Schatz, Michael C
Published in Nature methods (01.11.2015)
Published in Nature methods (01.11.2015)
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Abstract A27: Recurrent noncoding regulatory mutations in pancreatic ductal adenocarcinoma
Feigin, Michael E., Garvin, Tyler, Bailey, Peter, Waddell, Nicola, Chang, David K., Shuai, Shimin, Gallinger, Steven, McPherson, John D., Grimmond, Sean M., Khurana, Ekta, Stein, Lincoln D., Biankin, Andrew V., Schatz, Michael C., Tuveson, David A.
Published in Cancer research (Chicago, Ill.) (15.12.2016)
Published in Cancer research (Chicago, Ill.) (15.12.2016)
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Enhancer Redundancy Allows for Phenotypic Robustness in Mammalian Development
Osterwalder, Marco, Barozzi, Iros, Tissières, Virginie, Fukuda-Yuzawa, Yoko, Mannion, Brandon J., Afzal, Sarah Y., Lee, Elizabeth A., Zhu, Yiwen, Plajzer-Frick, Ingrid, Pickle, Catherine S., Kato, Momoe, Garvin, Tyler H., Pham, Quan T., Harrington, Anne N., Akiyama, Jennifer A., Afzal, Veena, Lopez-Rios, Javier, Dickel, Diane E., Visel, Axel, Pennacchio, Len A.
Published in Nature (London) (31.01.2018)
Published in Nature (London) (31.01.2018)
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Journal Article
Ultraconserved Enhancers Are Required for Normal Development
Dickel, Diane E., Ypsilanti, Athena R., Pla, Ramón, Zhu, Yiwen, Barozzi, Iros, Mannion, Brandon J., Khin, Yupar S., Fukuda-Yuzawa, Yoko, Plajzer-Frick, Ingrid, Pickle, Catherine S., Lee, Elizabeth A., Harrington, Anne N., Pham, Quan T., Garvin, Tyler H., Kato, Momoe, Osterwalder, Marco, Akiyama, Jennifer A., Afzal, Veena, Rubenstein, John L. R., Pennacchio, Len A., Visel, Axel
Published in Cell (01.01.2018)
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Published in Cell (01.01.2018)
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