The Power of Inbreeding: NGS-Based GWAS of Rice Reveals Convergent Evolution during Rice Domestication
Wang, Hongru, Xu, Xun, Vieira, Filipe Garrett, Xiao, Yunhua, Li, Zhikang, Wang, Jun, Nielsen, Rasmus, Chu, Chengcai
Published in Molecular plant (06.07.2016)
Published in Molecular plant (06.07.2016)
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Journal Article
The evolutionary history of extinct and living lions
de Manuel, Marc, Barnett, Ross, Sandoval-Velasco, Marcela, Yamaguchi, Nobuyuki, Vieira, Filipe Garrett, Mendoza, M. Lisandra Zepeda, Liu, Shiping, Martin, Michael D., Sinding, Mikkel-Holger S., Mak, Sarah S. T., Carøe, Christian, Liu, Shanlin, Guo, Chunxue, Zheng, Jiao, Zazula, Grant, Baryshnikov, Gennady, Eizirik, Eduardo, Koepfli, Klaus-Peter, Johnson, Warren E., Antunes, Agostinho, Sicheritz-Ponten, Thomas, Gopalakrishnan, Shyam, Larson, Greger, Yang, Huanming, O’Brien, Stephen J., Hansen, Anders J., Zhang, Guojie, Marques-Bonet, Tomas, Gilbert, M. Thomas P.
Published in Proceedings of the National Academy of Sciences - PNAS (19.05.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (19.05.2020)
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Journal Article
Contrasting genetic signal of recolonization after rainforest fragmentation in African trees with different dispersal abilities
Piñeiro, Rosalía, Hardy, Olivier J., Tovar, Carolina, Gopalakrishnan, Shyam, Vieira, Filipe Garrett, Gilbert, M. Thomas P.
Published in Proceedings of the National Academy of Sciences - PNAS (06.07.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (06.07.2021)
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Journal Article
Major driver mutations are shared between sinonasal intestinal-type adenocarcinoma and the morphologically identical colorectal adenocarcinoma
Sjöstedt, Sannia, Schmidt, Ane Yde, Vieira, Filipe Garrett, Willemoe, Gro Linno, Agander, Tina Klitmøller, Olsen, Caroline, Nielsen, Finn Cilius, von Buchwald, Christian
Published in Journal of cancer research and clinical oncology (01.04.2021)
Published in Journal of cancer research and clinical oncology (01.04.2021)
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Journal Article
Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq
Kodama, Miyako, Brinch-Pedersen, Henrik, Sharma, Shrikant, Holme, Inger Bæksted, Joernsgaard, Bjarne, Dzhanfezova, Tsaneta, Amby, Daniel Buchvaldt, Vieira, Filipe Garrett, Liu, Shanlin, Gilbert, M Thomas P
Published in BMC genomics (08.11.2018)
Published in BMC genomics (08.11.2018)
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Journal Article
Intestinal metaplasia is a precursor lesion for sinonasal intestinal‐type adenocarcinoma: genomic investigation of a case proving this hypothesis
Sjöstedt, Sannia, Schmidt, Ane Yde, Vieira, Filipe Garrett, Woller, Nina Claire, Nielsen, Finn Cilius, Buchwald, Christian
Published in APMIS : acta pathologica, microbiologica et immunologica Scandinavica (01.01.2022)
Published in APMIS : acta pathologica, microbiologica et immunologica Scandinavica (01.01.2022)
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Journal Article
Palaeoproteomics identifies beaver fur in Danish high-status Viking Age burials - direct evidence of fur trade
Brandt, Luise Ørsted, Taurozzi, Alberto J, Mackie, Meaghan, Sinding, Mikkel-Holger S, Vieira, Filipe Garrett, Schmidt, Anne Lisbeth, Rimstad, Charlotte, Collins, Matthew J, Mannering, Ulla
Published in PloS one (27.07.2022)
Published in PloS one (27.07.2022)
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Journal Article
A Comparison of Tools for Copy-Number Variation Detection in Germline Whole Exome and Whole Genome Sequencing Data
Gabrielaite, Migle, Torp, Mathias Husted, Rasmussen, Malthe Sebro, Andreu-Sánchez, Sergio, Vieira, Filipe Garrett, Pedersen, Christina Bligaard, Kinalis, Savvas, Madsen, Majbritt Busk, Kodama, Miyako, Demircan, Gül Sude, Simonyan, Arman, Yde, Christina Westmose, Olsen, Lars Rønn, Marvig, Rasmus L, Østrup, Olga, Rossing, Maria, Nielsen, Finn Cilius, Winther, Ole, Bagger, Frederik Otzen
Published in Cancers (14.12.2021)
Published in Cancers (14.12.2021)
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Journal Article
Differences in gene expression despite identical histomorphology in sinonasal intestinal‐type adenocarcinoma and metastases from colorectal adenocarcinoma
Sjöstedt, Sannia, Vieira, Filipe Garrett, Karnov, Kirstine, Agander, Tina Klitmøller, Willemoe, Gro Linno, Rohrberg, Kristoffer Staal, Nielsen, Finn Cilius, Buchwald, Christian
Published in APMIS : acta pathologica, microbiologica et immunologica Scandinavica (01.09.2022)
Published in APMIS : acta pathologica, microbiologica et immunologica Scandinavica (01.09.2022)
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Journal Article
Genomic alterations in the stepwise progression from normal mucosa to metastasizing oral squamous cell carcinoma
Jensen, Jakob Myllerup, Sjöstedt, Sannia Mia Svenningsen, Carmona, Javiera Laing, Ahlborn, Lise Barlebo, Vieira, Filipe Garrett, Nielsen, Finn Cilius, Kiss, Katalin, Grønhøj, Christian, von Buchwald, Christian
Published in Frontiers in oncology (11.09.2024)
Published in Frontiers in oncology (11.09.2024)
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Journal Article
Viral and Genomic Drivers of Squamous Cell Neoplasms Arising in the Lacrimal Drainage System
Ramberg, Ingvild, Vieira, Filipe Garrett, Toft, Peter Bjerre, von Buchwald, Christian, Heegaard, Steffen
Published in Cancers (23.05.2022)
Published in Cancers (23.05.2022)
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Journal Article
Correction to: Major driver mutations are shared between sinonasal intestinal-type adenocarcinoma and the morphologically identical colorectal adenocarcinoma
Sjöstedt, Sannia, Schmidt, Ane Yde, Vieira, Filipe Garrett, Willemoe, Gro Linno, Agander, Tina Klitmøller, Olsen, Caroline, Nielsen, Finn Cilius, von Buchwald, Christian
Published in Journal of cancer research and clinical oncology (01.04.2021)
Published in Journal of cancer research and clinical oncology (01.04.2021)
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Journal Article
Conservation genetics of the critically endangered Siamese rosewood (Dalbergia cochinchinensis): recommendations for management and sustainable use
Hartvig, Ida, So, Thea, Changtragoon, Suchitra, Tran, Hoa Thi, Bouamanivong, Somsanith, Ogden, Rob, Senn, Helen, Vieira, Filipe Garrett, Turner, Frances, Talbot, Richard, Theilade, Ida, Nielsen, Lene Rostgaard, Kjær, Erik Dahl
Published in Conservation genetics (01.08.2020)
Published in Conservation genetics (01.08.2020)
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Journal Article
The origin and evolution of maize in the Southwestern United States
da Fonseca, Rute R, Smith, Bruce D, Wales, Nathan, Cappellini, Enrico, Skoglund, Pontus, Fumagalli, Matteo, Samaniego, José Alfredo, Carøe, Christian, Ávila-Arcos, María C, Hufnagel, David E, Korneliussen, Thorfinn Sand, Vieira, Filipe Garrett, Jakobsson, Mattias, Arriaza, Bernardo, Willerslev, Eske, Nielsen, Rasmus, Hufford, Matthew B, Albrechtsen, Anders, Ross-Ibarra, Jeffrey, Gilbert, M Thomas P
Published in Nature plants (08.01.2015)
Published in Nature plants (08.01.2015)
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Journal Article
Genomic population structure of freshwater‐resident and anadromous ide (Leuciscus idus) in north‐western Europe
Skovrind, Mikkel, Olsen, Morten Tange, Vieira, Filipe Garrett, Pacheco, George, Carl, Henrik, Gilbert, M. Thomas P., Møller, Peter Rask
Published in Ecology and evolution (01.02.2016)
Published in Ecology and evolution (01.02.2016)
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Journal Article
Genomic Alterations in Human Papillomavirus-Positive and -Negative Conjunctival Squamous Cell Carcinomas
Ramberg, Ingvild, Vieira, Filipe Garrett, Toft, Peter Bjerre, von Buchwald, Christian, Funding, Mikkel, Nielsen, Finn Cilius, Heegaard, Steffen
Published in Investigative ophthalmology & visual science (01.11.2021)
Published in Investigative ophthalmology & visual science (01.11.2021)
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Journal Article
Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens
Barnett, Ross, Westbury, Michael V., Sandoval-Velasco, Marcela, Vieira, Filipe Garrett, Jeon, Sungwon, Zazula, Grant, Martin, Michael D., Ho, Simon Y.W., Mather, Niklas, Gopalakrishnan, Shyam, Ramos-Madrigal, Jazmín, de Manuel, Marc, Zepeda-Mendoza, M. Lisandra, Antunes, Agostinho, Baez, Aldo Carmona, De Cahsan, Binia, Larson, Greger, O’Brien, Stephen J., Eizirik, Eduardo, Johnson, Warren E., Koepfli, Klaus-Peter, Wilting, Andreas, Fickel, Jörns, Dalén, Love, Lorenzen, Eline D., Marques-Bonet, Tomas, Hansen, Anders J., Zhang, Guojie, Bhak, Jong, Yamaguchi, Nobuyuki, Gilbert, M. Thomas P.
Published in Current biology (21.12.2020)
Published in Current biology (21.12.2020)
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Uncovering neutral and adaptive genomic differentiation among European perch with brackish water and freshwater origin in the western Baltic Sea region
Skovrind, Mikkel, Pacheco, George, Christensen, Emil Aputsiaq Flindt, Gopalakrishnan, Shyam, Fietz, Katharina, Holm-Hansen, Tore Hejl, Vieira, Filipe Garrett, Krag, Marcus Anders, Carl, Henrik, Gilbert, M.Thomas P., Olsen, Morten Tange, Møller, Peter Rask
Published in Fisheries research (01.12.2023)
Published in Fisheries research (01.12.2023)
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Journal Article
Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
Mak, Sarah Siu Tze, Gopalakrishnan, Shyam, Carøe, Christian, Geng, Chunyu, Liu, Shanlin, Sinding, Mikkel-Holger S, Kuderna, Lukas F K, Zhang, Wenwei, Fu, Shujin, Vieira, Filipe G, Germonpré, Mietje, Bocherens, Hervé, Fedorov, Sergey, Petersen, Bent, Sicheritz-Pontén, Thomas, Marques-Bonet, Tomas, Zhang, Guojie, Jiang, Hui, Gilbert, M Thomas P
Published in Gigascience (01.08.2017)
Published in Gigascience (01.08.2017)
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