Live-seq enables temporal transcriptomic recording of single cells
Chen, Wanze, Guillaume-Gentil, Orane, Rainer, Pernille Yde, Gäbelein, Christoph G., Saelens, Wouter, Gardeux, Vincent, Klaeger, Amanda, Dainese, Riccardo, Zachara, Magda, Zambelli, Tomaso, Vorholt, Julia A., Deplancke, Bart
Published in Nature (London) (25.08.2022)
Published in Nature (London) (25.08.2022)
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Journal Article
BRB-seq: ultra-affordable high-throughput transcriptomics enabled by bulk RNA barcoding and sequencing
Alpern, Daniel, Gardeux, Vincent, Russeil, Julie, Mangeat, Bastien, Meireles-Filho, Antonio C A, Breysse, Romane, Hacker, David, Deplancke, Bart
Published in Genome Biology (19.04.2019)
Published in Genome Biology (19.04.2019)
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Journal Article
Disparate temperature-dependent virus-host dynamics for SARS-CoV-2 and SARS-CoV in the human respiratory epithelium
V'kovski, Philip, Gultom, Mitra, Kelly, Jenna N, Steiner, Silvio, Russeil, Julie, Mangeat, Bastien, Cora, Elisa, Pezoldt, Joern, Holwerda, Melle, Kratzel, Annika, Laloli, Laura, Wider, Manon, Portmann, Jasmine, Tran, Thao, Ebert, Nadine, Stalder, Hanspeter, Hartmann, Rune, Gardeux, Vincent, Alpern, Daniel, Deplancke, Bart, Thiel, Volker, Dijkman, Ronald
Published in PLoS biology (29.03.2021)
Published in PLoS biology (29.03.2021)
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Journal Article
Deterministic scRNA-seq captures variation in intestinal crypt and organoid composition
Bues, Johannes, Biočanin, Marjan, Pezoldt, Joern, Dainese, Riccardo, Chrisnandy, Antonius, Rezakhani, Saba, Saelens, Wouter, Gardeux, Vincent, Gupta, Revant, Sarkis, Rita, Russeil, Julie, Saeys, Yvan, Amstad, Esther, Claassen, Manfred, Lutolf, Matthias P., Deplancke, Bart
Published in Nature methods (01.03.2022)
Published in Nature methods (01.03.2022)
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Journal Article
Inter-embryo gene expression variability recapitulates the hourglass pattern of evo-devo
Liu, Jialin, Frochaux, Michael, Gardeux, Vincent, Deplancke, Bart, Robinson-Rechavi, Marc
Published in BMC biology (19.09.2020)
Published in BMC biology (19.09.2020)
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Journal Article
A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation
Llimos, Gerard, Gardeux, Vincent, Koch, Ute, Kribelbauer, Judith F., Hafner, Antonina, Alpern, Daniel, Pezoldt, Joern, Litovchenko, Maria, Russeil, Julie, Dainese, Riccardo, Moia, Riccardo, Mahmoud, Abdurraouf Mokhtar, Rossi, Davide, Gaidano, Gianluca, Plass, Christoph, Lutsik, Pavlo, Gerhauser, Clarissa, Waszak, Sebastian M., Boettiger, Alistair, Radtke, Freddy, Deplancke, Bart
Published in Nature communications (19.04.2022)
Published in Nature communications (19.04.2022)
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Journal Article
Sex‐dependent and sex‐independent regulatory systems of size variation in natural populations
Okada, Hirokazu, Yagi, Ryohei, Gardeux, Vincent, Deplancke, Bart, Hafen, Ernst
Published in Molecular systems biology (01.11.2019)
Published in Molecular systems biology (01.11.2019)
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Journal Article
Author Correction: Predicting standardized uptake value of brown adipose tissue from CT scans using convolutional neural networks
Erdil, Ertunc, Becker, Anton S., Schwyzer, Moritz, Martinez-Tellez, Borja, Ruiz, Jonatan R., Sartoretti, Thomas, Vargas, H. Alberto, Burger, A. Irene, Chirindel, Alin, Wild, Damian, Zamboni, Nicola, Deplancke, Bart, Gardeux, Vincent, Maushart, Claudia Irene, Betz, Matthias Johannes, Wolfrum, Christian, Konukoglu, Ender
Published in Nature communications (19.11.2024)
Published in Nature communications (19.11.2024)
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Journal Article
Predicting standardized uptake value of brown adipose tissue from CT scans using convolutional neural networks
Erdil, Ertunc, Becker, Anton S., Schwyzer, Moritz, Martinez-Tellez, Borja, Ruiz, Jonatan R., Sartoretti, Thomas, Vargas, H. Alberto, Burger, A. Irene, Chirindel, Alin, Wild, Damian, Zamboni, Nicola, Deplancke, Bart, Gardeux, Vincent, Maushart, Claudia Irene, Betz, Matthias Johannes, Wolfrum, Christian, Konukoglu, Ender
Published in Nature communications (27.09.2024)
Published in Nature communications (27.09.2024)
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Journal Article
Postnatal expansion of mesenteric lymph node stromal cells towards reticular and CD34+ stromal cell subsets
Pezoldt, Joern, Wiechers, Carolin, Zou, Mangge, Litovchenko, Maria, Biocanin, Marjan, Beckstette, Michael, Sitnik, Katarzyna, Palatella, Martina, van Mierlo, Guido, Chen, Wanze, Gardeux, Vincent, Floess, Stefan, Ebel, Maria, Russeil, Julie, Arampatzi, Panagiota, Vafardanejad, Ehsan, Saliba, Antoine-Emmanuel, Deplancke, Bart, Huehn, Jochen
Published in Nature communications (24.11.2022)
Published in Nature communications (24.11.2022)
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Journal Article
cis-regulatory variation modulates susceptibility to enteric infection in the Drosophila genetic reference panel
Frochaux, Michael V, Bou Sleiman, Maroun, Gardeux, Vincent, Dainese, Riccardo, Hollis, Brian, Litovchenko, Maria, Braman, Virginie S, Andreani, Tommaso, Osman, Dani, Deplancke, Bart
Published in Genome Biology (17.01.2020)
Published in Genome Biology (17.01.2020)
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Journal Article
Dissecting the brown adipogenic regulatory network using integrative genomics
Pradhan, Rachana N., Bues, Johannes J., Gardeux, Vincent, Schwalie, Petra C., Alpern, Daniel, Chen, Wanze, Russeil, Julie, Raghav, Sunil K., Deplancke, Bart
Published in Scientific reports (09.02.2017)
Published in Scientific reports (09.02.2017)
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Journal Article
Deterministic scRNA-seq captures variation in intestinal crypt and organoid composition
Bues, Johannes, Biočanin, Marjan, Pezoldt, Joern, Dainese, Riccardo, Chrisnandy, Antonius, Rezakhani, Saba, Saelens, Wouter, Gardeux, Vincent, Gupta, Revant, Sarkis, Rita, Russeil, Julie, Saeys, Yvan, Amstad, Esther, Claassen, Manfred, Lutolf, Matthias P., Deplancke, Bart
Published in Nature methods (01.03.2022)
Published in Nature methods (01.03.2022)
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Journal Article
N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes
Li, Qike, Schissler, A Grant, Gardeux, Vincent, Achour, Ikbel, Kenost, Colleen, Berghout, Joanne, Li, Haiquan, Zhang, Hao Helen, Lussier, Yves A
Published in BMC medical genomics (24.05.2017)
Published in BMC medical genomics (24.05.2017)
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Journal Article
Computing Molecular Signatures as Optima of a Bi-Objective Function: Method and Application to Prediction in Oncogenomics
Gardeux, Vincent, Chelouah, Rachid, Wanderley, Maria F. Barbosa, Siarry, Patrick, Braga, Antônio P., Reyal, Fabien, Rouzier, Roman, Pusztai, Lajos, Natowicz, René
Published in Cancer informatics (01.01.2015)
Published in Cancer informatics (01.01.2015)
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