BELB: a biomedical entity linking benchmark
Garda, Samuele, Weber-Genzel, Leon, Martin, Robert, Leser, Ulf
Published in Bioinformatics (Oxford, England) (01.11.2023)
Published in Bioinformatics (Oxford, England) (01.11.2023)
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Journal Article
HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools
Sänger, Mario, Garda, Samuele, Wang, Xing David, Weber-Genzel, Leon, Droop, Pia, Fuchs, Benedikt, Akbik, Alan, Leser, Ulf
Published in Bioinformatics (Oxford, England) (01.10.2024)
Published in Bioinformatics (Oxford, England) (01.10.2024)
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Journal Article
scPerturb: harmonized single-cell perturbation data
Peidli, Stefan, Green, Tessa D., Shen, Ciyue, Gross, Torsten, Min, Joseph, Garda, Samuele, Yuan, Bo, Schumacher, Linus J., Taylor-King, Jake P., Marks, Debora S., Luna, Augustin, Blüthgen, Nils, Sander, Chris
Published in Nature methods (01.03.2024)
Published in Nature methods (01.03.2024)
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Journal Article
RegEl corpus: identifying DNA regulatory elements in the scientific literature
Garda, Samuele, Lenihan-Geels, Freyda, Proft, Sebastian, Hochmuth, Stefanie, Schülke, Markus, Seelow, Dominik, Leser, Ulf
Published in Database : the journal of biological databases and curation (27.06.2022)
Published in Database : the journal of biological databases and curation (27.06.2022)
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Journal Article
Public data sources for regulatory genomic features
Garda, Samuele, Schwarz, Jana Marie, Schuelke, Markus, Leser, Ulf, Seelow, Dominik
Published in Medizinische Genetik (01.06.2021)
Published in Medizinische Genetik (01.06.2021)
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Journal Article
HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools
Sänger, Mario, Garda, Samuele, Wang, Xing David, Weber-Genzel, Leon, Droop, Pia, Fuchs, Benedikt, Akbik, Alan, Leser, Ulf
Published in arXiv.org (20.02.2024)
Published in arXiv.org (20.02.2024)
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Journal Article
BigBIO: A Framework for Data-Centric Biomedical Natural Language Processing
Fries, Jason Alan, Weber, Leon, Seelam, Natasha, Altay, Gabriel, Datta, Debajyoti, Garda, Samuele, Kang, Myungsun, Su, Ruisi, Kusa, Wojciech, Cahyawijaya, Samuel, Barth, Fabio, Ott, Simon, Samwald, Matthias, Bach, Stephen, Biderman, Stella, Sänger, Mario, Wang, Bo, Callahan, Alison, Periñán, Daniel León, Gigant, Théo, Haller, Patrick, Chim, Jenny, Posada, Jose David, Giorgi, John Michael, Sivaraman, Karthik Rangasai, Pàmies, Marc, Nezhurina, Marianna, Martin, Robert, Cullan, Michael, Freidank, Moritz, Dahlberg, Nathan, Mishra, Shubhanshu, Bose, Shamik, Broad, Nicholas Michio, Labrak, Yanis, Deshmukh, Shlok S, Kiblawi, Sid, Singh, Ayush, Vu, Minh Chien, Neeraj, Trishala, Golde, Jonas, del Moral, Albert Villanova, Beilharz, Benjamin
Year of Publication 12.10.2022
Year of Publication 12.10.2022
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Journal Article
scPerturb: Information Resource for Harmonized Single-Cell Perturbation Data
Peidli, Stefan, Green, Tessa Durakis, Shen, Ciyue, Gross, Torsten, Min, Joseph, Garda, Samuele, Taylor-King, Jake, Marks, Debora, Luna, Augustin, Bluthgen, Nils, Sander, Chris
Published in bioRxiv (24.09.2022)
Published in bioRxiv (24.09.2022)
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BigBIO: A Framework for Data-Centric Biomedical Natural Language Processing
Fries, Jason Alan, Weber, Leon, Seelam, Natasha, Altay, Gabriel, Datta, Debajyoti, Garda, Samuele, Kang, Myungsun, Ruisi Su, Kusa, Wojciech, Cahyawijaya, Samuel, Barth, Fabio, Ott, Simon, Samwald, Matthias, Bach, Stephen, Biderman, Stella, Sänger, Mario, Wang, Bo, Callahan, Alison, Daniel León Periñán, Gigant, Théo, Haller, Patrick, Chim, Jenny, Posada, Jose David, Giorgi, John Michael, Sivaraman, Karthik Rangasai, Pàmies, Marc, Nezhurina, Marianna, Martin, Robert, Cullan, Michael, Freidank, Moritz, Dahlberg, Nathan, Mishra, Shubhanshu, Bose, Shamik, Nicholas Michio Broad, Labrak, Yanis, Deshmukh, Shlok S, Kiblawi, Sid, Singh, Ayush, Minh Chien Vu, Trishala Neeraj, Golde, Jonas, Albert Villanova del Moral, Beilharz, Benjamin
Published in arXiv.org (30.06.2022)
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Published in arXiv.org (30.06.2022)
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