ENCORE: a practical implementation to improve reproducibility and transparency of computational research
van Kampen, Antoine H. C., Mahamune, Utkarsh, Jongejan, Aldo, van Schaik, Barbera D. C., Balashova, Daria, Lashgari, Danial, Pras-Raves, Mia, Wever, Eric J. M., Dane, Adrie D., García-Valiente, Rodrigo, Moerland, Perry D.
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Published in Nature communications (16.09.2024)
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Published in eLife (26.08.2020)
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Multiscale Modeling of Germinal Center Recapitulates the Temporal Transition From Memory B Cells to Plasma Cells Differentiation as Regulated by Antigen Affinity-Based Tfh Cell Help
Merino Tejero, Elena, Lashgari, Danial, García-Valiente, Rodrigo, Gao, Xuefeng, Crauste, Fabien, Robert, Philippe A, Meyer-Hermann, Michael, Martínez, María Rodríguez, van Ham, S Marieke, Guikema, Jeroen E J, Hoefsloot, Huub, van Kampen, Antoine H C
Published in Frontiers in immunology (05.02.2021)
Published in Frontiers in immunology (05.02.2021)
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Coupled Antigen and BLIMP1 Asymmetric Division With a Large Segregation Between Daughter Cells Recapitulates the Temporal Transition From Memory B Cells to Plasma Cells and a DZ-to-LZ Ratio in the Germinal Center
Merino Tejero, Elena, Lashgari, Danial, García-Valiente, Rodrigo, He, Jiaojiao, Robert, Philippe A, Meyer-Hermann, Michael, Guikema, Jeroen E J, Hoefsloot, Huub, van Kampen, Antoine H C
Published in Frontiers in immunology (17.08.2021)
Published in Frontiers in immunology (17.08.2021)
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Dynamic Intracellular Metabolic Cell Signaling Profiles During Ag-Dependent B-Cell Differentiation
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Published in Frontiers in immunology (30.03.2021)
Published in Frontiers in immunology (30.03.2021)
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Non-apoptotic FAS signaling controls mTOR activation and extrafollicular maturation in human B cells
Staniek, Julian, Kalina, Tomas, Andrieux, Geoffroy, Boerries, Melanie, Janowska, Iga, Fuentes, Manuel, Díez, Paula, Bakardjieva, Marina, Stancikova, Jitka, Raabe, Jan, Neumann, Julika, Schwenk, Sabine, Arpesella, Leonardo, Stuchly, Jan, Benes, Vladimir, García Valiente, Rodrigo, Fernández García, Jonatan, Carsetti, Rita, Piano Mortari, Eva, Catala, Albert, de la Calle, Oscar, Sogkas, Georgios, Neven, Bénédicte, Rieux-Laucat, Frédéric, Magerus, Aude, Neth, Olaf, Olbrich, Peter, Voll, Reinhard E, Alsina, Laia, Allende, Luis M, Gonzalez-Granado, Luis I, Böhler, Chiara, Thiel, Jens, Venhoff, Nils, Lorenzetti, Raquel, Warnatz, Klaus, Unger, Susanne, Seidl, Maximilian, Mielenz, Dirk, Schneider, Pascal, Ehl, Stephan, Rensing-Ehl, Anne, Smulski, Cristian Roberto, Rizzi, Marta
Published in Science immunology (12.01.2024)
Published in Science immunology (12.01.2024)
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Understanding repertoire sequencing data through a multiscale computational model of the germinal center
García-Valiente, Rodrigo, Merino Tejero, Elena, Stratigopoulou, Maria, Balashova, Daria, Jongejan, Aldo, Lashgari, Danial, Pélissier, Aurélien, Caniels, Tom G., Claireaux, Mathieu A. F., Musters, Anne, van Gils, Marit J., Rodríguez Martínez, María, de Vries, Niek, Meyer-Hermann, Michael, Guikema, Jeroen E. J., Hoefsloot, Huub, van Kampen, Antoine H. C.
Published in NPJ systems biology and applications (16.03.2023)
Published in NPJ systems biology and applications (16.03.2023)
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A truncating variant of RAD51B associated with primary ovarian insufficiency provides insights into its meiotic and somatic functions
Franca, Monica M., Condezo, Yazmine B., Elzaiat, Maëva, Felipe-Medina, Natalia, Sánchez-Sáez, Fernando, Muñoz, Sergio, Sainz-Urruela, Raquel, Martín-Hervás, M. Rosario, García-Valiente, Rodrigo, Sánchez-Martín, Manuel A., Astudillo, Aurora, Mendez, Juan, Llano, Elena, Veitia, Reiner A., Mendonca, Berenice B., Pendás, Alberto M.
Published in Cell death and differentiation (01.12.2022)
Published in Cell death and differentiation (01.12.2022)
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The PSMA8 subunit of the spermatoproteasome is essential for proper meiotic exit and mouse fertility
Gómez-H, Laura, Felipe-Medina, Natalia, Condezo, Yazmine B, Garcia-Valiente, Rodrigo, Ramos, Isabel, Suja, José Angel, Barbero, José Luis, Roig, Ignasi, Sánchez-Martín, Manuel, de Rooij, Dirk G, Llano, Elena, Pendas, Alberto M
Published in PLoS genetics (22.08.2019)
Published in PLoS genetics (22.08.2019)
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Deciphering Biomarkers for Leptomeningeal Metastasis in Malignant Hemopathies (Lymphoma/Leukemia) Patients by Comprehensive Multipronged Proteomics Characterization of Cerebrospinal Fluid
Juanes-Velasco, Pablo, Galicia, Norma, Pin, Elisa, Jara-Acevedo, Ricardo, Carabias-Sánchez, Javier, García-Valiente, Rodrigo, Lecrevisse, Quentin, Pedreira, Carlos Eduardo, Gongora, Rafael, Sanchez-Santos, Jose Manuel, Lorenzo-Gil, Héctor, Landeira-Viñuela, Alicia, Bareke, Halin, Orfao, Alberto, Nilsson, Peter, Fuentes, Manuel
Published in Cancers (17.01.2022)
Published in Cancers (17.01.2022)
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A Systematic Analysis Workflow for High-Density Customized Protein Microarrays in Biomarker Screening
García-Valiente, Rodrigo, Fernández-García, Jonatan, Carabias-Sánchez, Javier, Landeira-Viñuela, Alicia, Góngora, Rafael, Gonzalez-Gonzalez, María, Fuentes, Manuel
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2019)
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2019)
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Multi-Scale Modeling Recapitulates the Effect of Genetic Alterations Associated With Diffuse Large B-Cell Lymphoma in the Germinal Center Dynamics
Merino Tejero, Elena, Mao, Qirong, Lashgari, Danial, García-Valiente, Rodrigo, Robert, Philippe A., Meyer-Hermann, Michael, Rodríguez Martínez, María, Guikema, Jeroen E. J., Hoefsloot, Huub H. C., van Kampen, Antoine H. C.
Published in Frontiers in Systems Biology (Online) (27.04.2022)
Published in Frontiers in Systems Biology (Online) (27.04.2022)
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A missense in HSF2BP causing Primary Ovarian Insufficiency affects meiotic recombination by its novel interactor C19ORF57/MIDAP
Felipe-Medina, Natalia, Caburet, Sandrine, Sanchez-Saez, Fernando, Codezo, Yazmine B, De Rooij, Dirk G, Gomez-H, Laura, Garcia-Valiente, Rodrigo, Todeschini, Anne Laure, Duque, Paloma, Shalev, Stavit, Sanchez-Martin, Manuel Adolfo, Llano, Elena, Veitia, Reiner, Pendas, Alberto M
Published in bioRxiv (05.03.2020)
Published in bioRxiv (05.03.2020)
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Spermatoproteasome-deficient mice are proficient in meiotic DNA repair but defective in meiotic exit
Gomez-H, Laura, Felipe-Medina, Natalia, Codezo, Yazmine B, Garcia-Valiente, Rodrigo, Ramos, Isabel, Roig, Ignasi, Sanchez-Martin, Manuel, De Rooij, Dirk G, Llano, Elena, Pendas, Alberto M
Published in bioRxiv (03.08.2018)
Published in bioRxiv (03.08.2018)
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