Tumor evolution: Linear, branching, neutral or punctuated?
Davis, Alexander, Gao, Ruli, Navin, Nicholas
Published in Biochimica et biophysica acta (01.04.2017)
Published in Biochimica et biophysica acta (01.04.2017)
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Journal Article
Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes
Gao, Ruli, Bai, Shanshan, Henderson, Ying C., Lin, Yiyun, Schalck, Aislyn, Yan, Yun, Kumar, Tapsi, Hu, Min, Sei, Emi, Davis, Alexander, Wang, Fang, Shaitelman, Simona F., Wang, Jennifer Rui, Chen, Ken, Moulder, Stacy, Lai, Stephen Y., Navin, Nicholas E.
Published in Nature biotechnology (01.05.2021)
Published in Nature biotechnology (01.05.2021)
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Journal Article
Chemoresistance Evolution in Triple-Negative Breast Cancer Delineated by Single-Cell Sequencing
Kim, Charissa, Gao, Ruli, Sei, Emi, Brandt, Rachel, Hartman, Johan, Hatschek, Thomas, Crosetto, Nicola, Foukakis, Theodoros, Navin, Nicholas E.
Published in Cell (03.05.2018)
Published in Cell (03.05.2018)
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Journal Article
Single-cell analysis of human glioma and immune cells identifies S100A4 as an immunotherapy target
Abdelfattah, Nourhan, Kumar, Parveen, Wang, Caiyi, Leu, Jia-Shiun, Flynn, William F., Gao, Ruli, Baskin, David S., Pichumani, Kumar, Ijare, Omkar B., Wood, Stephanie L., Powell, Suzanne Z., Haviland, David L., Parker Kerrigan, Brittany C., Lang, Frederick F., Prabhu, Sujit S., Huntoon, Kristin M., Jiang, Wen, Kim, Betty Y. S., George, Joshy, Yun, Kyuson
Published in Nature communications (09.02.2022)
Published in Nature communications (09.02.2022)
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Journal Article
Multiclonal Invasion in Breast Tumors Identified by Topographic Single Cell Sequencing
Casasent, Anna K., Schalck, Aislyn, Gao, Ruli, Sei, Emi, Long, Annalyssa, Pangburn, William, Casasent, Tod, Meric-Bernstam, Funda, Edgerton, Mary E., Navin, Nicholas E.
Published in Cell (11.01.2018)
Published in Cell (11.01.2018)
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Journal Article
Punctuated copy number evolution and clonal stasis in triple-negative breast cancer
Gao, Ruli, Davis, Alexander, McDonald, Thomas O, Sei, Emi, Shi, Xiuqing, Wang, Yong, Tsai, Pei-Ching, Casasent, Anna, Waters, Jill, Zhang, Hong, Meric-Bernstam, Funda, Michor, Franziska, Navin, Nicholas E
Published in Nature genetics (01.10.2016)
Published in Nature genetics (01.10.2016)
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Journal Article
Single-cell DNA sequencing reveals a late-dissemination model in metastatic colorectal cancer
Leung, Marco L, Davis, Alexander, Gao, Ruli, Casasent, Anna, Wang, Yong, Sei, Emi, Vilar, Eduardo, Maru, Dipen, Kopetz, Scott, Navin, Nicholas E
Published in Genome research (01.08.2017)
Published in Genome research (01.08.2017)
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Journal Article
Nanogrid single-nucleus RNA sequencing reveals phenotypic diversity in breast cancer
Gao, Ruli, Kim, Charissa, Sei, Emi, Foukakis, Theodoros, Crosetto, Nicola, Chan, Leong-Keat, Srinivasan, Maithreyan, Zhang, Hong, Meric-Bernstam, Funda, Navin, Nicholas
Published in Nature communications (09.08.2017)
Published in Nature communications (09.08.2017)
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Journal Article
Highly multiplexed targeted DNA sequencing from single nuclei
Leung, Marco L, Wang, Yong, Kim, Charissa, Gao, Ruli, Jiang, Jerry, Sei, Emi, Navin, Nicholas E
Published in Nature protocols (01.02.2016)
Published in Nature protocols (01.02.2016)
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Journal Article
Wnt/ß-catenin-mediated p53 suppression is indispensable for osteogenesis of mesenchymal progenitor cells
Zhou, Xin, Beilter, Allyson, Xu, Zhaohui, Gao, Ruli, Xiong, Shunbin, Paulucci-Holthauzen, Adriana, Lozano, Guillermina, de Crombrugghe, Benoit, Gorlick, Richard
Published in Cell death & disease (21.05.2021)
Published in Cell death & disease (21.05.2021)
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Journal Article
High throughput single cell long-read sequencing analyses of same-cell genotypes and phenotypes in human tumors
Shiau, Cheng-Kai, Lu, Lina, Kieser, Rachel, Fukumura, Kazutaka, Pan, Timothy, Lin, Hsiao-Yun, Yang, Jie, Tong, Eric L., Lee, GaHyun, Yan, Yuanqing, Huse, Jason T., Gao, Ruli
Published in Nature communications (11.07.2023)
Published in Nature communications (11.07.2023)
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Journal Article
GSK3β regulates epithelial-mesenchymal transition and cancer stem cell properties in triple-negative breast cancer
Vijay, Geraldine Vidhya, Zhao, Na, Den Hollander, Petra, Toneff, Mike J, Joseph, Robiya, Pietila, Mika, Taube, Joseph H, Sarkar, Tapasree R, Ramirez-Pena, Esmeralda, Werden, Steven J, Shariati, Maryam, Gao, Ruli, Sobieski, Mary, Stephan, Clifford C, Sphyris, Nathalie, Miura, Noayuki, Davies, Peter, Chang, Jeffrey T, Soundararajan, Rama, Rosen, Jeffrey M, Mani, Sendurai A
Published in Breast cancer research : BCR (07.03.2019)
Published in Breast cancer research : BCR (07.03.2019)
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Journal Article
Anaplastic transformation in thyroid cancer revealed by single-cell transcriptomics
Lu, Lina, Wang, Jennifer Rui, Henderson, Ying C, Bai, Shanshan, Yang, Jie, Hu, Min, Shiau, Cheng-Kai, Pan, Timothy, Yan, Yuanqing, Tran, Tuan M, Li, Jianzhuo, Kieser, Rachel, Zhao, Xiao, Wang, Jiping, Nurieva, Roza, Williams, Michelle D, Cabanillas, Maria E, Dadu, Ramona, Busaidy, Naifa Lamki, Zafereo, Mark, Navin, Nicholas, Lai, Stephen Y, Gao, Ruli
Published in The Journal of clinical investigation (01.06.2023)
Published in The Journal of clinical investigation (01.06.2023)
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Journal Article
MEDALT: single-cell copy number lineage tracing enabling gene discovery
Wang, Fang, Wang, Qihan, Mohanty, Vakul, Liang, Shaoheng, Dou, Jinzhuang, Han, Jincheng, Minussi, Darlan Conterno, Gao, Ruli, Ding, Li, Navin, Nicholas, Chen, Ken
Published in Genome Biology (23.02.2021)
Published in Genome Biology (23.02.2021)
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Journal Article
Immunodeficiency in Pancreatic Adenocarcinoma with Diabetes Revealed by Comparative Genomics
Yan, Yuanqing, Gao, Ruli, Trinh, Thao L P, Grant, Maria B
Published in Clinical cancer research (15.10.2017)
Published in Clinical cancer research (15.10.2017)
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Journal Article
Restructuring of the Gut Microbiome by Intermittent Fasting Prevents Retinopathy and Prolongs Survival in db/db Mice
Beli, Eleni, Yan, Yuanqing, Moldovan, Leni, Vieira, Cristiano P, Gao, Ruli, Duan, Yaqian, Prasad, Ram, Bhatwadekar, Ashay, White, Fletcher A, Townsend, Steven D, Chan, Luisa, Ryan, Caitlin N, Morton, Daniel, Moldovan, Emil G, Chu, Fang-I, Oudit, Gavin Y, Derendorf, Hartmut, Adorini, Luciano, Wang, Xiaoxin X, Evans-Molina, Carmella, Mirmira, Raghavendra G, Boulton, Michael E, Yoder, Mervin C, Li, Qiuhong, Levi, Moshe, Busik, Julia V, Grant, Maria B
Published in Diabetes (New York, N.Y.) (01.09.2018)
Published in Diabetes (New York, N.Y.) (01.09.2018)
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Journal Article
Multiorgan transplant for therapy-associated lung and liver failure in a patient with stage III lung cancer
Chandrasekhar, Anitha, Yang, Hee Chul, Demir, Tarik, Yeldandi, Anjana, Kurihara, Chitaru, Tomic, Rade, Gao, Ruli, Goldman, Jonathan W., Nadig, Satish, Chae, Young Kwang, Bharat, Ankit
Published in American journal of transplantation (13.09.2024)
Published in American journal of transplantation (13.09.2024)
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Journal Article
GSK3[beta] regulates epithelial-mesenchymal transition and cancer stem cell properties in triple-negative breast cancer
Vijay, Geraldine Vidhya, Zhao, Na, Den Hollander, Petra, Toneff, Mike J, Joseph, Robiya, Pietila, Mika, Taube, Joseph H, Sarkar, Tapasree R, Ramirez-Pena, Esmeralda, Werden, Steven J, Shariati, Maryam, Gao, Ruli, Sobieski, Mary, Stephan, Clifford C, Sphyris, Nathalie, Miura, Noayuki, Davies, Peter, Chang, Jeffrey T, Soundararajan, Rama, Rosen, Jeffrey M, Mani, Sendurai A
Published in Breast cancer research : BCR (07.03.2019)
Published in Breast cancer research : BCR (07.03.2019)
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Journal Article