The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies
Yoshida, Catherine E, Kruczkiewicz, Peter, Laing, Chad R, Lingohr, Erika J, Gannon, Victor P J, Nash, John H E, Taboada, Eduardo N
Published in PloS one (22.01.2016)
Published in PloS one (22.01.2016)
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Distribution of heavy metal resistance elements in Canadian Salmonella 4,[5],12:i:- populations and association with the monophasic genotypes and phenotype
Clark, Clifford G, Landgraff, Chrystal, Robertson, James, Pollari, Frank, Parker, Stephen, Nadon, Celine, Gannon, Victor P J, Johnson, Roger, Nash, John
Published in PloS one (27.07.2020)
Published in PloS one (27.07.2020)
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Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions
Laing, Chad, Buchanan, Cody, Taboada, Eduardo N, Zhang, Yongxiang, Kropinski, Andrew, Villegas, Andre, Thomas, James E, Gannon, Victor P J
Published in BMC bioinformatics (15.09.2010)
Published in BMC bioinformatics (15.09.2010)
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A comparison of Shiga-toxin 2 bacteriophage from classical enterohemorrhagic Escherichia coli serotypes and the German E. coli O104:H4 outbreak strain
Laing, Chad R, Zhang, Yongxiang, Gilmour, Matthew W, Allen, Vanessa, Johnson, Roger, Thomas, James E, Gannon, Victor P J
Published in PloS one (23.05.2012)
Published in PloS one (23.05.2012)
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Comparative Genomic Analysis of Escherichia coli O157:H7 Isolated from Super-Shedder and Low-Shedder Cattle
Munns, Krysty D, Zaheer, Rahat, Xu, Yong, Stanford, Kim, Laing, Chad R, Gannon, Victor P J, Selinger, L Brent, McAllister, Tim A
Published in PloS one (28.03.2016)
Published in PloS one (28.03.2016)
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Genome evolution in major Escherichia coli O157:H7 lineages
Zhang, Yongxiang, Laing, Chad, Steele, Marina, Ziebell, Kim, Johnson, Roger, Benson, Andrew K, Taboada, Eduardo, Gannon, Victor P J
Published in BMC genomics (16.05.2007)
Published in BMC genomics (16.05.2007)
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Development and Validation of a Comparative Genomic Fingerprinting Method for High-Resolution Genotyping of Campylobacter jejuni
TABOADA, Eduardo N, ROSS, Susan L, GANNON, Victor P. J, MARSHALL, Barbara, POLLARI, Frank, CLARK, Clifford G, MUTSCHALL, Steven K, MACKINNON, Joanne M, ROBERTS, Michael J, BUCHANAN, Cody J, KRUCZKIEWICZ, Peter, JOKINEN, Cassandra C, THOMAS, James E, NASH, John H. E
Published in Journal of Clinical Microbiology (01.03.2012)
Published in Journal of Clinical Microbiology (01.03.2012)
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Quantitative multi-year elucidation of fecal sources of waterborne pathogen contamination in the South Nation River basin using Bacteroidales microbial source tracking markers
Marti, Romain, Gannon, Victor P.J., Jokinen, Cassandra, Lanthier, Martin, Lapen, David R., Neumann, Norman F., Ruecker, Norma J., Scott, Andrew, Wilkes, Graham, Zhang, Yun, Topp, Edward
Published in Water research (Oxford) (01.05.2013)
Published in Water research (Oxford) (01.05.2013)
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Spatiotemporal Analysis of Cryptosporidium Species/Genotypes and Relationships with Other Zoonotic Pathogens in Surface Water from Mixed-Use Watersheds
WILKES, Graham, RUECKER, Norma J, NEUMANN, Norman F, GANNON, Victor P. J, JOKINEN, Cassandra, SUNOHARA, Mark, TOPP, Edward, PINTAR, Katarina D. M, EDGE, Thomas A, LAPEN, David R
Published in Applied and Environmental Microbiology (01.01.2013)
Published in Applied and Environmental Microbiology (01.01.2013)
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Lineage and Host Source Are Both Correlated with Levels of Shiga Toxin 2 Production by Escherichia coli O157:H7 Strains
Zhang, Yongxiang, Laing, Chad, Zhang, Zhengzhong, Hallewell, Jennyka, You, Chunping, Ziebell, Kim, Johnson, Roger P, Kropinski, Andrew M, Thomas, James E, Karmali, Mohamed, Gannon, Victor P.J
Published in Applied and Environmental Microbiology (01.01.2010)
Published in Applied and Environmental Microbiology (01.01.2010)
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An enhanced technique combining pre-enrichment and passive filtration increases the isolation efficiency of Campylobacter jejuni and Campylobacter coli from water and animal fecal samples
Jokinen, Cassandra C., Koot, Jacqueline M., Carrillo, Catherine D., Gannon, Victor P.J., Jardine, Claire M., Mutschall, Steven K., Topp, Edward, Taboada, Eduardo N.
Published in Journal of microbiological methods (01.12.2012)
Published in Journal of microbiological methods (01.12.2012)
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ECTyper: in silico Escherichia coli serotype and species prediction from raw and assembled whole-genome sequence data
Bessonov, Kyrylo, Laing, Chad, Robertson, James, Yong, Irene, Ziebell, Kim, Gannon, Victor P J, Nichani, Anil, Arya, Gitanjali, Nash, John H E, Christianson, Sara
Published in Microbial genomics (01.12.2021)
Published in Microbial genomics (01.12.2021)
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Rapid Determination of Escherichia coli O157:H7 Lineage Types and Molecular Subtypes by Using Comparative Genomic Fingerprinting
Laing, Chad, Pegg, Crystal, Yawney, Davis, Ziebell, Kim, Steele, Marina, Johnson, Roger, Thomas, James E, Taboada, Eduardo N, Zhang, Yongxiang, Gannon, Victor P.J
Published in Applied and Environmental Microbiology (01.11.2008)
Published in Applied and Environmental Microbiology (01.11.2008)
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Exploiting the explosion of information associated with whole genome sequencing to tackle Shiga toxin-producing Escherichia coli (STEC) in global food production systems
Franz, Eelco, Delaquis, Pascal, Morabito, Stefano, Beutin, Lothar, Gobius, Kari, Rasko, David A., Bono, Jim, French, Nigel, Osek, Jacek, Lindstedt, Bjørn-Arne, Muniesa, Maite, Manning, Shannon, LeJeune, Jeff, Callaway, Todd, Beatson, Scott, Eppinger, Mark, Dallman, Tim, Forbes, Ken J., Aarts, Henk, Pearl, David L., Gannon, Victor P.J., Laing, Chad R., Strachan, Norval J.C.
Published in International journal of food microbiology (18.09.2014)
Published in International journal of food microbiology (18.09.2014)
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"These Aren't the Strains You're Looking for": Recovery Bias of Common Campylobacter jejuni Subtypes in Mixed Cultures
Hetman, Benjamin M, Mutschall, Steven K, Carrillo, Catherine D, Thomas, James E, Gannon, Victor P J, Inglis, G Douglas, Taboada, Eduardo N
Published in Frontiers in microbiology (09.04.2020)
Published in Frontiers in microbiology (09.04.2020)
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A Genome-Wide Association Study to Identify Diagnostic Markers for Human Pathogenic Campylobacter jejuni Strains
Buchanan, Cody J, Webb, Andrew L, Mutschall, Steven K, Kruczkiewicz, Peter, Barker, Dillon O R, Hetman, Benjamin M, Gannon, Victor P J, Abbott, D Wade, Thomas, James E, Inglis, G Douglas, Taboada, Eduardo N
Published in Frontiers in microbiology (30.06.2017)
Published in Frontiers in microbiology (30.06.2017)
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SuperPhy: predictive genomics for the bacterial pathogen Escherichia coli
Whiteside, Matthew D, Laing, Chad R, Manji, Akiff, Kruczkiewicz, Peter, Taboada, Eduardo N, Gannon, Victor P J
Published in BMC microbiology (12.04.2016)
Published in BMC microbiology (12.04.2016)
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