Intra-Host Evolution Analyses in an Immunosuppressed Patient Supports SARS-CoV-2 Viral Reservoir Hypothesis
Fournelle, Dominique, Mostefai, Fatima, Brunet-Ratnasingham, Elsa, Poujol, Raphaël, Grenier, Jean-Christophe, Gálvez, José Héctor, Pagliuzza, Amélie, Levade, Inès, Moreira, Sandrine, Benlarbi, Mehdi, Beaudoin-Bussières, Guillaume, Gendron-Lepage, Gabrielle, Bourassa, Catherine, Tauzin, Alexandra, Grandjean Lapierre, Simon, Chomont, Nicolas, Finzi, Andrés, Kaufmann, Daniel E, Craig, Morgan, Hussin, Julie G
Published in Viruses (23.02.2024)
Published in Viruses (23.02.2024)
Get full text
Journal Article
Ultrafast functional profiling of RNA-seq data for nonmodel organisms
Liu, Peng, Ewald, Jessica, Galvez, Jose Hector, Head, Jessica, Crump, Doug, Bourque, Guillaume, Basu, Niladri, Xia, Jianguo
Published in Genome research (01.04.2021)
Published in Genome research (01.04.2021)
Get full text
Journal Article
Genetic variation in the Y chromosome and sex-biased DNA methylation in somatic cells in the mouse
Batdorj, Enkhjin, AlOgayil, Najla, Zhuang, Qinwei Kim-wee, Galvez, Jose Hector, Bauermeister, Klara, Nagata, Kei, Kimura, Tohru, Ward, Monika A., Taketo, Teruko, Bourque, Guillaume, Naumova, Anna K.
Published in Mammalian genome (01.03.2023)
Published in Mammalian genome (01.03.2023)
Get full text
Journal Article
Distinct roles of androgen receptor, estrogen receptor alpha, and BCL6 in the establishment of sex-biased DNA methylation in mouse liver
AlOgayil, Najla, Bauermeister, Klara, Galvez, Jose Hector, Venkatesh, Varun S., Zhuang, Qinwei Kim-wee, Chang, Matthew L., Davey, Rachel A., Zajac, Jeffrey D., Ida, Kinuyo, Kamiya, Akihide, Taketo, Teruko, Bourque, Guillaume, Naumova, Anna K.
Published in Scientific reports (02.07.2021)
Published in Scientific reports (02.07.2021)
Get full text
Journal Article
A small number of early introductions seeded widespread transmission of SARS-CoV-2 in Québec, Canada
Murall, Carmen Lía, Fournier, Eric, Galvez, Jose Hector, N'Guessan, Arnaud, Reiling, Sarah J, Quirion, Pierre-Olivier, Naderi, Sana, Roy, Anne-Marie, Chen, Shu-Huang, Stretenowich, Paul, Bourgey, Mathieu, Bujold, David, Gregoire, Romain, Lepage, Pierre, St-Cyr, Janick, Willet, Patrick, Dion, Réjean, Charest, Hugues, Lathrop, Mark, Roger, Michel, Bourque, Guillaume, Ragoussis, Jiannis, Shapiro, B. Jesse, Moreira, Sandrine
Published in Genome medicine (28.10.2021)
Published in Genome medicine (28.10.2021)
Get full text
Journal Article
Author Correction: Distinct roles of androgen receptor, estrogen receptor alpha, and BCL6 in the establishment of sex-biased DNA methylation in mouse liver
AlOgayil, Najla, Bauermeister, Klara, Galvez, Jose Hector, Venkatesh, Varun S., Zhuang, Qinwei Kim-wee, Chang, Matthew L., Davey, Rachel A., Zajac, Jeffrey D., Ida, Kinuyo, Kamiya, Akihide, Taketo, Teruko, Bourque, Guillaume, Naumova, Anna K.
Published in Scientific reports (22.11.2021)
Published in Scientific reports (22.11.2021)
Get full text
Journal Article
SARS-CoV-2 rapidly evolves lineage-specific phenotypic differences when passaged repeatedly in immune-naïve mice
Willett, Julian Daniel Sunday, Gravel, Annie, Dubuc, Isabelle, Gudimard, Leslie, Dos Santos Pereira Andrade, Ana Claudia, Lacasse, Émile, Fortin, Paul, Liu, Ju-Ling, Cervantes, Jose Avila, Galvez, Jose Hector, Djambazian, Haig Hugo Vrej, Zwaig, Melissa, Roy, Anne-Marie, Lee, Sally, Chen, Shu-Huang, Ragoussis, Jiannis, Flamand, Louis
Published in Communications biology (16.02.2024)
Published in Communications biology (16.02.2024)
Get full text
Journal Article
Sex Chromosomes and Sex Phenotype Contribute to Biased DNA Methylation in Mouse Liver
Zhuang, Qinwei Kim-Wee, Galvez, Jose Hector, Xiao, Qian, AlOgayil, Najla, Hyacinthe, Jeffrey, Taketo, Teruko, Bourque, Guillaume, Naumova, Anna K
Published in Cells (Basel, Switzerland) (09.06.2020)
Published in Cells (Basel, Switzerland) (09.06.2020)
Get full text
Journal Article
Data Mining Nitrogen-Responsive Gene Expression for Source–Sink Relations and Indicators of N Status in Potato
Parenteau, Mia T., Gu, Hong, Zebarth, Bernie J., Cambouris, Athyna N., Lafond, Jean, Nelson, Alison, Nyiraneza, Judith, Davidson, Charlotte, Lagüe, Martin, Galvez, José Héctor, Strömvik, Martina V., Tai, Helen H.
Published in Agronomy (Basel) (01.10.2020)
Published in Agronomy (Basel) (01.10.2020)
Get full text
Journal Article
Structural genome analysis in cultivated potato taxa
Kyriakidou, Maria, Achakkagari, Sai Reddy, Gálvez López, José Héctor, Zhu, Xinyi, Tang, Chen Yu, Tai, Helen H., Anglin, Noelle L., Ellis, David, Strömvik, Martina V.
Published in Theoretical and applied genetics (01.03.2020)
Published in Theoretical and applied genetics (01.03.2020)
Get full text
Journal Article
Regulatory interaction between the ZPBP2-ORMDL3/Zpbp2-Ormdl3 region and the circadian clock
Chang, Matthew L, Moussette, Sanny, Gamero-Estevez, Enrique, Gálvez, José Héctor, Chiwara, Victoria, Gupta, Indra R, Ryan, Aimee K, Naumova, Anna K
Published in PloS one (27.09.2019)
Published in PloS one (27.09.2019)
Get full text
Journal Article
Understanding potato with the help of genomics
Héctor Gálvez, José, H. Tai, Helen, A. Barkley, Noelle, Gardner, Kyle, Ellis, David, V. Strömvik, Martina
Published in AIMS agriculture and food (2017)
Published in AIMS agriculture and food (2017)
Get full text
Journal Article
SARS-CoV-2 variant natural evolution in K18-ACE2 mice increases virulence and produces treatment resistance-linked variant alleles
Sunday Willett, Julian Daniel, Gravel, Annie, Dubuc, Isabelle, Gudimard, Leslie, tin, Paul, Ju-Ling, Liu, Galvez, Jose Hector, Zwaig, Melissa, Roy, Anne-Marie, Lee, Sally, Shu-Huang, Chen, Ragoussis, Ioannis, Flamand, Louis
Published in bioRxiv (10.03.2023)
Published in bioRxiv (10.03.2023)
Get full text
Paper
Intra-host viral populations of SARS-CoV-2 in immunosuppressed patients with hematologic cancers
Fournelle, Dominique, Mostefai, Fatima, Brunet-Ratnasingham, Elsa, Poujol, Raphael, Grenier, Jean-Christophe, Galvez, Jose Hector, Pagliuzza, Amelie, Levade, Ines, Moreira, Sandrine, Simon Grandjean Lapierre, Chomont, Nicolas, Kaufmann, Daniel E, Morgan, Craig, Hussin, Julie
Published in bioRxiv (20.10.2022)
Published in bioRxiv (20.10.2022)
Get full text
Paper
More than a ‘Hundred Days War’: Persistent SARS-CoV-2 infection in a patient with ANCA-associated vasculitis
Mendel, Arielle, Colmegna, Ines, Bourque, Guillaume, Rajda, Ewa, Lee, Todd C, Galvez, Jose Hector, Vinet, Evelyne, Cheng, Matthew P
Published in Journal of the Association of Medical Microbiology and Infectious Disease Canada = Journal officiel de l'Association pour la microbiologie médicale et l'infectiologie Canada (01.06.2022)
Published in Journal of the Association of Medical Microbiology and Infectious Disease Canada = Journal officiel de l'Association pour la microbiologie médicale et l'infectiologie Canada (01.06.2022)
Get full text
Journal Article
The Canadian VirusSeq Data Portal & Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology
Gill, Erin E, Jia, Baofeng, Murall, Carmen Lia, Poujol, Raphaël, Anwar, Muhammad Zohaib, Nithu, Sara John, Richardsson, Justin, Hobb, Ashley, Olabode, Abayomi S, Lepsa, Alexandru, Duggan, Ana T, Tyler, Andrea D, N'Guessan, Arnaud, Kachru, Atul, Chan, Brandon, Yoshida, Catherine, Yung, Christina K, Bujold, David, Andric, Dusan, Su, Edmund, Griffiths, Emma J, Gary Van Domselaar, Jolly, Gordon W, Ward, Heather K E, Feher, Henrich, Baker, Jared, Simpson, Jared T, Uddin, Jaser, Ragoussis, Jiannis, Eubank, Jon, Fritz, Jörg H, Gálvez, José Héctor, Fang, Karen, Cullion, Kim, Rivera, Leonardo, Xiang, Linda, Croxen, Matthew A, Shiell, Mitchell, Prystajecky, Natalie, Pierre-Olivier Quirion, Bajari, Rosita, Rich, Samantha, Mubareka, Samira, Moreira, Sandrine, Cain, Scott, Sutcliffe, Steven G, Kraemer, Susanne A, Joly, Yann, Alturmessov, Yelizar, consortium, CPHLN, consortium, CanCOGeN, VirusSeq Data Portal Academic, Health network, Fiume, Marc, Snutch, Terrance P, Bell, Cindy, Lopez-Correa, Catalina, Hussin, Julie G, Joy, Jeffrey B, Colijn, Caroline, Gordon, Paul M K, Hsiao, William W L, Poon, Art F Y, Knox, Natalie C, Courtot, Mélanie, Stein, Lincoln, Otto, Sarah P, Bourque, Guillaume, Shapiro, B Jesse, Brinkman, Fiona S L
Published in arXiv.org (08.05.2024)
Published in arXiv.org (08.05.2024)
Get full text
Paper
Journal Article
The Canadian VirusSeq Data Portal & Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology
Gill, Erin E, Jia, Baofeng, Murall, Carmen Lia, Poujol, Raphaël, Anwar, Muhammad Zohaib, John, Nithu Sara, Richardsson, Justin, Hobb, Ashley, Olabode, Abayomi S, Lepsa, Alexandru, Duggan, Ana T, Tyler, Andrea D, N'Guessan, Arnaud, Kachru, Atul, Chan, Brandon, Yoshida, Catherine, Yung, Christina K, Bujold, David, Andric, Dusan, Su, Edmund, Griffiths, Emma J, Van Domselaar, Gary, Jolly, Gordon W, Ward, Heather K E, Feher, Henrich, Baker, Jared, Simpson, Jared T, Uddin, Jaser, Ragoussis, Jiannis, Eubank, Jon, Fritz, Jörg H, Gálvez, José Héctor, Fang, Karen, Cullion, Kim, Rivera, Leonardo, Xiang, Linda, Croxen, Matthew A, Shiell, Mitchell, Prystajecky, Natalie, Quirion, Pierre-Olivier, Bajari, Rosita, Rich, Samantha, Mubareka, Samira, Moreira, Sandrine, Cain, Scott, Sutcliffe, Steven G, Kraemer, Susanne A, Joly, Yann, Alturmessov, Yelizar, Consortium, Cphln, Consortium, CanCOGeN, Fiume, Marc, Snutch, Terrance P, Bell, Cindy, Lopez-Correa, Catalina, Hussin, Julie G, Joy, Jeffrey B, Colijn, Caroline, Gordon, Paul M K, Hsiao, William W L, Poon, Art F Y, Knox, Natalie C, Courtot, Mélanie, Stein, Lincoln, Otto, Sarah P, Bourque, Guillaume, Shapiro, B Jesse, Brinkman, Fiona S L
Published in ArXiv.org (08.05.2024)
Get full text
Published in ArXiv.org (08.05.2024)
Journal Article
The Canadian VirusSeq Data Portal & Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology
Gill, Erin E, Jia, Baofeng, Murall, Carmen Lia, Poujol, Raphaël, Anwar, Muhammad Zohaib, John, Nithu Sara, Richardsson, Justin, Hobb, Ashley, Olabode, Abayomi S, Lepsa, Alexandru, Duggan, Ana T, Tyler, Andrea D, N'Guessan, Arnaud, Kachru, Atul, Chan, Brandon, Yoshida, Catherine, Yung, Christina K, Bujold, David, Andric, Dusan, Su, Edmund, Griffiths, Emma J, Van Domselaar, Gary, Jolly, Gordon W, Ward, Heather K E, Feher, Henrich, Baker, Jared, Simpson, Jared T, Uddin, Jaser, Ragoussis, Jiannis, Eubank, Jon, Fritz, Jörg H, Gálvez, José Héctor, Fang, Karen, Cullion, Kim, Rivera, Leonardo, Xiang, Linda, Croxen, Matthew A, Shiell, Mitchell, Prystajecky, Natalie, Quirion, Pierre-Olivier, Bajari, Rosita, Rich, Samantha, Mubareka, Samira, Moreira, Sandrine, Cain, Scott, Sutcliffe, Steven G, Kraemer, Susanne A, Joly, Yann, Alturmessov, Yelizar, Consortium, Cphln, Consortium, CanCOGeN, Fiume, Marc, Snutch, Terrance P, Bell, Cindy, Lopez-Correa, Catalina, Hussin, Julie G, Joy, Jeffrey B, Colijn, Caroline, Gordon, Paul M K, Hsiao, William W L, Poon, Art F Y, Knox, Natalie C, Courtot, Mélanie, Stein, Lincoln, Otto, Sarah P, Bourque, Guillaume, Shapiro, B Jesse, Brinkman, Fiona S L
Published in ArXiv (08.05.2024)
Get full text
Published in ArXiv (08.05.2024)
Paper