eggNOG v4.0: nested orthology inference across 3686 organisms
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Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Adaptation of S. cerevisiae to Fermented Food Environments Reveals Remarkable Genome Plasticity and the Footprints of Domestication
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Published in Molecular biology and evolution (01.07.2018)
Published in Molecular biology and evolution (01.07.2018)
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spongeScan: A web for detecting microRNA binding elements in lncRNA sequences
Furió-Tarí, Pedro, Tarazona, Sonia, Gabaldón, Toni, Enright, Anton J, Conesa, Ana
Published in Nucleic acids research (08.07.2016)
Published in Nucleic acids research (08.07.2016)
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The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)
Dohm, Juliane C., Minoche, André E., Holtgräwe, Daniela, Capella-Gutiérrez, Salvador, Zakrzewski, Falk, Tafer, Hakim, Rupp, Oliver, Sörensen, Thomas Rosleff, Stracke, Ralf, Reinhardt, Richard, Goesmann, Alexander, Kraft, Thomas, Schulz, Britta, Stadler, Peter F., Schmidt, Thomas, Gabaldón, Toni, Lehrach, Hans, Weisshaar, Bernd, Himmelbauer, Heinz
Published in Nature (London) (23.01.2014)
Published in Nature (London) (23.01.2014)
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Patterns of Genomic Variation in the Opportunistic Pathogen Candida glabrata Suggest the Existence of Mating and a Secondary Association with Humans
Carreté, Laia, Ksiezopolska, Ewa, Pegueroles, Cinta, Gómez-Molero, Emilia, Saus, Ester, Iraola-Guzmán, Susana, Loska, Damian, Bader, Oliver, Fairhead, Cecile, Gabaldón, Toni
Published in Current biology (08.01.2018)
Published in Current biology (08.01.2018)
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Gene flow contributes to diversification of the major fungal pathogen Candida albicans
Ropars, Jeanne, Maufrais, Corinne, Diogo, Dorothée, Marcet-Houben, Marina, Perin, Aurélie, Sertour, Natacha, Mosca, Kevin, Permal, Emmanuelle, Laval, Guillaume, Bouchier, Christiane, Ma, Laurence, Schwartz, Katja, Voelz, Kerstin, May, Robin C., Poulain, Julie, Battail, Christophe, Wincker, Patrick, Borman, Andrew M., Chowdhary, Anuradha, Fan, Shangrong, Kim, Soo Hyun, Le Pape, Patrice, Romeo, Orazio, Shin, Jong Hee, Gabaldon, Toni, Sherlock, Gavin, Bougnoux, Marie-Elisabeth, d’Enfert, Christophe
Published in Nature communications (08.06.2018)
Published in Nature communications (08.06.2018)
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Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species
Mathers, Thomas C, Chen, Yazhou, Kaithakottil, Gemy, Legeai, Fabrice, Mugford, Sam T, Baa-Puyoulet, Patrice, Bretaudeau, Anthony, Clavijo, Bernardo, Colella, Stefano, Collin, Olivier, Dalmay, Tamas, Derrien, Thomas, Feng, Honglin, Gabaldón, Toni, Jordan, Anna, Julca, Irene, Kettles, Graeme J, Kowitwanich, Krissana, Lavenier, Dominique, Lenzi, Paolo, Lopez-Gomollon, Sara, Loska, Damian, Mapleson, Daniel, Maumus, Florian, Moxon, Simon, Price, Daniel R G, Sugio, Akiko, van Munster, Manuella, Uzest, Marilyne, Waite, Darren, Jander, Georg, Tagu, Denis, Wilson, Alex C C, van Oosterhout, Cock, Swarbreck, David, Hogenhout, Saskia A
Published in Genome Biology (13.02.2017)
Published in Genome Biology (13.02.2017)
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Genome, Transcriptome, and Functional Analyses of Penicillium expansum Provide New Insights Into Secondary Metabolism and Pathogenicity
Ballester, Ana-Rose, Marcet-Houben, Marina, Levin, Elena, Sela, Noa, Selma-Lazaro, Cristina, Carmona, Loudes, Wisniewski, Michael, Droby, Samir, Gonzalez-Candlas, Luis, Gabaldon, Toni
Published in Molecular plant-microbe interactions (01.03.2015)
Published in Molecular plant-microbe interactions (01.03.2015)
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Standardized benchmarking in the quest for orthologs
Altenhoff, Adrian M, Boeckmann, Brigitte, Capella-Gutierrez, Salvador, Dalquen, Daniel A, DeLuca, Todd, Forslund, Kristoffer, Huerta-Cepas, Jaime, Linard, Benjamin, Pereira, Cécile, Pryszcz, Leszek P, Schreiber, Fabian, da Silva, Alan Sousa, Szklarczyk, Damian, Train, Clément-Marie, Bork, Peer, Lecompte, Odile, von Mering, Christian, Xenarios, Ioannis, Sjölander, Kimmen, Jensen, Lars Juhl, Martin, Maria J, Muffato, Matthieu, Gabaldón, Toni, Lewis, Suzanna E, Thomas, Paul D, Sonnhammer, Erik, Dessimoz, Christophe
Published in Nature methods (01.05.2016)
Published in Nature methods (01.05.2016)
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