A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation
Gruber, Andreas J, Schmidt, Ralf, Gruber, Andreas R, Martin, Georges, Ghosh, Souvik, Belmadani, Manuel, Keller, Walter, Zavolan, Mihaela
Published in Genome research (01.08.2016)
Published in Genome research (01.08.2016)
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Journal Article
Discovery of physiological and cancer-related regulators of 3' UTR processing with KAPAC
Gruber, Andreas J, Schmidt, Ralf, Ghosh, Souvik, Martin, Georges, Gruber, Andreas R, van Nimwegen, Erik, Zavolan, Mihaela
Published in Genome Biology (28.03.2018)
Published in Genome Biology (28.03.2018)
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Journal Article
Global 3′ UTR shortening has a limited effect on protein abundance in proliferating T cells
Gruber, Andreas R., Martin, Georges, Müller, Philipp, Schmidt, Alexander, Gruber, Andreas J., Gumienny, Rafal, Mittal, Nitish, Jayachandran, Rajesh, Pieters, Jean, Keller, Walter, van Nimwegen, Erik, Zavolan, Mihaela
Published in Nature communications (21.11.2014)
Published in Nature communications (21.11.2014)
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Journal Article
PolyASite 2.0: a consolidated atlas of polyadenylation sites from 3′ end sequencing
Herrmann, Christina J, Schmidt, Ralf, Kanitz, Alexander, Artimo, Panu, Gruber, Andreas J, Zavolan, Mihaela
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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Journal Article
Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms
Gruber, Andreas J., Gypas, Foivos, Riba, Andrea, Schmidt, Ralf, Zavolan, Mihaela
Published in Nature methods (01.10.2018)
Published in Nature methods (01.10.2018)
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Journal Article
RNAalifold: improved consensus structure prediction for RNA alignments
Bernhart, Stephan H, Hofacker, Ivo L, Will, Sebastian, Gruber, Andreas R, Stadler, Peter F
Published in BMC bioinformatics (11.11.2008)
Published in BMC bioinformatics (11.11.2008)
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Journal Article
ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs
Balwierz, Piotr J, Pachkov, Mikhail, Arnold, Phil, Gruber, Andreas J, Zavolan, Mihaela, van Nimwegen, Erik
Published in Genome research (01.05.2014)
Published in Genome research (01.05.2014)
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Journal Article
An updated human snoRNAome
Jorjani, Hadi, Kehr, Stephanie, Jedlinski, Dominik J, Gumienny, Rafal, Hertel, Jana, Stadler, Peter F, Zavolan, Mihaela, Gruber, Andreas R
Published in Nucleic acids research (20.06.2016)
Published in Nucleic acids research (20.06.2016)
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Journal Article
Reconstitution of CPSF active in polyadenylation: recognition of the polyadenylation signal by WDR33
Schönemann, Lars, Kühn, Uwe, Martin, Georges, Schäfer, Peter, Gruber, Andreas R, Keller, Walter, Zavolan, Mihaela, Wahle, Elmar
Published in Genes & development (01.11.2014)
Published in Genes & development (01.11.2014)
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Journal Article
Vienna RNA Websuite
Gruber, Andreas R, Lorenz, Ronny, Bernhart, Stephan H, Neuböck, Richard, Hofacker, Ivo L
Published in Nucleic acids research (01.07.2008)
Published in Nucleic acids research (01.07.2008)
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Journal Article
MAPP unravels frequent co-regulation of splicing and polyadenylation by RNA-binding proteins and their dysregulation in cancer
Bak, Maciej, van Nimwegen, Erik, Kouzel, Ian U., Gur, Tamer, Schmidt, Ralf, Zavolan, Mihaela, Gruber, Andreas J.
Published in Nature communications (15.05.2024)
Published in Nature communications (15.05.2024)
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Journal Article
Cleavage factor Im is a key regulator of 3′ UTR length
Gruber, Andreas R., Martin, Georges, Keller, Walter, Zavolan, Mihaiela
Published in RNA biology (01.12.2012)
Published in RNA biology (01.12.2012)
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