Proteomic profiling of exosomes leads to the identification of novel biomarkers for prostate cancer
Duijvesz, Diederick, Burnum-Johnson, Kristin E, Gritsenko, Marina A, Hoogland, A Marije, Vredenbregt-van den Berg, Mirella S, Willemsen, Rob, Luider, Theo, Paša-Tolić, Ljiljana, Jenster, Guido
Published in PloS one (31.12.2013)
Published in PloS one (31.12.2013)
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Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography–mass spectrometry
Mertins, Philipp, Tang, Lauren C., Krug, Karsten, Clark, David J., Gritsenko, Marina A., Chen, Lijun, Clauser, Karl R., Clauss, Therese R., Shah, Punit, Gillette, Michael A., Petyuk, Vladislav A., Thomas, Stefani N., Mani, D. R., Mundt, Filip, Moore, Ronald J., Hu, Yingwei, Zhao, Rui, Schnaubelt, Michael, Keshishian, Hasmik, Monroe, Matthew E., Zhang, Zhen, Udeshi, Namrata D., Mani, Deepak, Davies, Sherri R., Townsend, R. Reid, Chan, Daniel W., Smith, Richard D., Zhang, Hui, Liu, Tao, Carr, Steven A.
Published in Nature protocols (01.07.2018)
Published in Nature protocols (01.07.2018)
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Temporal proteome and lipidome profiles reveal hepatitis C virus-associated reprogramming of hepatocellular metabolism and bioenergetics
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Published in PLoS pathogens (01.01.2010)
Published in PLoS pathogens (01.01.2010)
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Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities
Vasaikar, Suhas, Huang, Chen, Wang, Xiaojing, Petyuk, Vladislav A., Savage, Sara R., Wen, Bo, Dou, Yongchao, Zhang, Yun, Shi, Zhiao, Arshad, Osama A., Gritsenko, Marina A., Zimmerman, Lisa J., McDermott, Jason E., Clauss, Therese R., Moore, Ronald J., Zhao, Rui, Monroe, Matthew E., Wang, Yi-Ting, Chambers, Matthew C., Slebos, Robbert J.C., Lau, Ken S., Mo, Qianxing, Ding, Li, Ellis, Matthew, Thiagarajan, Mathangi, Kinsinger, Christopher R., Rodriguez, Henry, Smith, Richard D., Rodland, Karin D., Liebler, Daniel C., Liu, Tao, Zhang, Bing, Pandey, Akhilesh, Paulovich, Amanda, Hoofnagle, Andrew, Mani, D.R., Chan, Daniel W., Ransohoff, David F., Fenyo, David, Tabb, David L., Levine, Douglas A., Boja, Emily S., Kuhn, Eric, White, Forest M., Whiteley, Gordon A., Zhu, Heng, Zhang, Hui, Shih, Ie-Ming, Bavarva, Jasmin, Whiteaker, Jeffrey, Ketchum, Karen A., Clauser, Karl R., Ruggles, Kelly, Elburn, Kimberly, Hannick, Linda, Watson, Mark, Oberti, Mauricio, Mesri, Mehdi, Sanders, Melinda E., Borucki, Melissa, Gillette, Michael A., Snyder, Michael, Edwards, Nathan J., Vatanian, Negin, Rudnick, Paul A., McGarvey, Peter B., Mertins, Philip, Townsend, R. Reid, Thangudu, Ratna R., Rivers, Robert C., Payne, Samuel H., Davies, Sherri R., Cai, Shuang, Stein, Stephen E., Carr, Steven A., Skates, Steven J., Madhavan, Subha, Hiltke, Tara, Chen, Xian, Zhao, Yingming, Wang, Yue, Zhang, Zhen
Published in Cell (02.05.2019)
Published in Cell (02.05.2019)
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SerpinB1 Promotes Pancreatic β Cell Proliferation
El Ouaamari, Abdelfattah, Dirice, Ercument, Gedeon, Nicholas, Hu, Jiang, Zhou, Jian-Ying, Shirakawa, Jun, Hou, Lifei, Goodman, Jessica, Karampelias, Christos, Qiang, Guifeng, Boucher, Jeremie, Martinez, Rachael, Gritsenko, Marina A., De Jesus, Dario F., Kahraman, Sevim, Bhatt, Shweta, Smith, Richard D., Beer, Hans-Dietmar, Jungtrakoon, Prapaporn, Gong, Yanping, Goldfine, Allison B., Liew, Chong Wee, Doria, Alessandro, Andersson, Olov, Qian, Wei-Jun, Remold-O’Donnell, Eileen, Kulkarni, Rohit N.
Published in Cell metabolism (12.01.2016)
Published in Cell metabolism (12.01.2016)
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Tutorial: best practices and considerations for mass-spectrometry-based protein biomarker discovery and validation
Nakayasu, Ernesto S., Gritsenko, Marina, Piehowski, Paul D., Gao, Yuqian, Orton, Daniel J., Schepmoes, Athena A., Fillmore, Thomas L., Frohnert, Brigitte I., Rewers, Marian, Krischer, Jeffrey P., Ansong, Charles, Suchy-Dicey, Astrid M., Evans-Molina, Carmella, Qian, Wei-Jun, Webb-Robertson, Bobbie-Jo M., Metz, Thomas O.
Published in Nature protocols (01.08.2021)
Published in Nature protocols (01.08.2021)
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Quantitative proteomics identifies altered O‐GlcNAcylation of structural, synaptic and memory‐associated proteins in Alzheimer's disease
Wang, Sheng, Yang, Feng, Petyuk, Vladislav A, Shukla, Anil K, Monroe, Matthew E, Gritsenko, Marina A, Rodland, Karin D, Smith, Richard D, Qian, Wei‐Jun, Gong, Cheng‐Xin, Liu, Tao
Published in The Journal of pathology (01.09.2017)
Published in The Journal of pathology (01.09.2017)
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The Legionella Effector SdjA Is a Bifunctional Enzyme That Distinctly Regulates Phosphoribosyl Ubiquitination
Song, Lei, Xie, Yongchao, Li, Chuang, Wang, Lidong, He, Chunlin, Zhang, Yong, Yuan, Jingya, Luo, Jingjing, Liu, Xi, Xiu, Yu, Li, Hang, Gritsenko, Marina, Nakayasu, Ernesto S, Feng, Yue, Luo, Zhao-Qing
Published in mBio (26.10.2021)
Published in mBio (26.10.2021)
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Boosting to Amplify Signal with Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells
Yi, Lian, Tsai, Chia-Feng, Dirice, Ercument, Swensen, Adam C, Chen, Jing, Shi, Tujin, Gritsenko, Marina A, Chu, Rosalie K, Piehowski, Paul D, Smith, Richard D, Rodland, Karin D, Atkinson, Mark A, Mathews, Clayton E, Kulkarni, Rohit N, Liu, Tao, Qian, Wei-Jun
Published in Analytical chemistry (Washington) (07.05.2019)
Published in Analytical chemistry (Washington) (07.05.2019)
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Comprehensive Proteomics Analysis of Stressed Human Islets Identifies GDF15 as a Target for Type 1 Diabetes Intervention
Nakayasu, Ernesto S., Syed, Farooq, Tersey, Sarah A., Gritsenko, Marina A., Mitchell, Hugh D., Chan, Chi Yuet, Dirice, Ercument, Turatsinze, Jean-Valery, Cui, Yi, Kulkarni, Rohit N., Eizirik, Decio L., Qian, Wei-Jun, Webb-Robertson, Bobbie-Jo M., Evans-Molina, Carmella, Mirmira, Raghavendra G., Metz, Thomas O.
Published in Cell metabolism (04.02.2020)
Published in Cell metabolism (04.02.2020)
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Nutritional markers and proteome in patients undergoing treatment for pulmonary tuberculosis differ by geographic region
Jarsberg, Leah G, Kedia, Komal, Wendler, Jason, Wright, Aaron T, Piehowski, Paul D, Gritsenko, Marina A, Shi, Tujin, Lewinsohn, David M, Sigal, George B, Weiner, Marc H, Smith, Richard D, Keane, Joseph, Jacobs, Jon M, Nahid, Payam
Published in PloS one (05.05.2021)
Published in PloS one (05.05.2021)
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The AML microenvironment catalyzes a stepwise evolution to gilteritinib resistance
Joshi, Sunil K., Nechiporuk, Tamilla, Bottomly, Daniel, Piehowski, Paul D., Reisz, Julie A., Pittsenbarger, Janét, Kaempf, Andy, Gosline, Sara J.C., Wang, Yi-Ting, Hansen, Joshua R., Gritsenko, Marina A., Hutchinson, Chelsea, Weitz, Karl K., Moon, Jamie, Cendali, Francesca, Fillmore, Thomas L., Tsai, Chia-Feng, Schepmoes, Athena A., Shi, Tujin, Arshad, Osama A., McDermott, Jason E., Babur, Ozgun, Watanabe-Smith, Kevin, Demir, Emek, D'Alessandro, Angelo, Liu, Tao, Tognon, Cristina E., Tyner, Jeffrey W., McWeeney, Shannon K., Rodland, Karin D., Druker, Brian J., Traer, Elie
Published in Cancer cell (12.07.2021)
Published in Cancer cell (12.07.2021)
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Reversed-phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells
Wang, Yuexi, Yang, Feng, Gritsenko, Marina A., Wang, Yingchun, Clauss, Therese, Liu, Tao, Shen, Yufeng, Monroe, Matthew E., Lopez-Ferrer, Daniel, Reno, Theresa, Moore, Ronald J., Klemke, Richard L., Camp II, David G., Smith, Richard D.
Published in Proteomics (Weinheim) (01.05.2011)
Published in Proteomics (Weinheim) (01.05.2011)
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Legionella pneumophila modulates host energy metabolism by ADP-ribosylation of ADP/ATP translocases
Fu, Jiaqi, Zhou, Mowei, Gritsenko, Marina A, Nakayasu, Ernesto S, Song, Lei, Luo, Zhao-Qing
Published in eLife (27.01.2022)
Published in eLife (27.01.2022)
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Multi-platform ’Omics Analysis of Human Ebola Virus Disease Pathogenesis
Eisfeld, Amie J., Halfmann, Peter J., Wendler, Jason P., Kyle, Jennifer E., Burnum-Johnson, Kristin E., Peralta, Zuleyma, Maemura, Tadashi, Walters, Kevin B., Watanabe, Tokiko, Fukuyama, Satoshi, Yamashita, Makoto, Jacobs, Jon M., Kim, Young-Mo, Casey, Cameron P., Stratton, Kelly G., Webb-Robertson, Bobbie-Jo M., Gritsenko, Marina A., Monroe, Matthew E., Weitz, Karl K., Shukla, Anil K., Tian, Mingyuan, Neumann, Gabriele, Reed, Jennifer L., van Bakel, Harm, Metz, Thomas O., Smith, Richard D., Waters, Katrina M., N'jai, Alhaji, Sahr, Foday, Kawaoka, Yoshihiro
Published in Cell host & microbe (13.12.2017)
Published in Cell host & microbe (13.12.2017)
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Ischemia in Tumors Induces Early and Sustained Phosphorylation Changes in Stress Kinase Pathways but Does Not Affect Global Protein Levels
Mertins, Philipp, Yang, Feng, Liu, Tao, Mani, D.R., Petyuk, Vladislav A., Gillette, Michael A., Clauser, Karl R., Qiao, Jana W., Gritsenko, Marina A., Moore, Ronald J., Levine, Douglas A., Townsend, Reid, Erdmann-Gilmore, Petra, Snider, Jacqueline E., Davies, Sherri R., Ruggles, Kelly V., Fenyo, David, Kitchens, R. Thomas, Li, Shunqiang, Olvera, Narciso, Dao, Fanny, Rodriguez, Henry, Chan, Daniel W., Liebler, Daniel, White, Forest, Rodland, Karin D., Mills, Gordon B., Smith, Richard D., Paulovich, Amanda G., Ellis, Matthew, Carr, Steven A.
Published in Molecular & cellular proteomics (01.07.2014)
Published in Molecular & cellular proteomics (01.07.2014)
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Proteogenomic characterization of difficult-to-treat breast cancer with tumor cells enriched through laser microdissection
Raj-Kumar, Praveen-Kumar, Lin, Xiaoying, Liu, Tao, Sturtz, Lori A, Gritsenko, Marina A, Petyuk, Vladislav A, Sagendorf, Tyler J, Deyarmin, Brenda, Liu, Jianfang, Praveen-Kumar, Anupama, Wang, Guisong, McDermott, Jason E, Shukla, Anil K, Moore, Ronald J, Monroe, Matthew E, Webb-Robertson, Bobbie-Jo M, Hooke, Jeffrey A, Fantacone-Campbell, Leigh, Mostoller, Brad, Kvecher, Leonid, Kane, Jennifer, Melley, Jennifer, Somiari, Stella, Soon-Shiong, Patrick, Smith, Richard D, Mural, Richard J, Rodland, Karin D, Shriver, Craig D, Kovatich, Albert J, Hu, Hai
Published in Breast cancer research : BCR (14.05.2024)
Published in Breast cancer research : BCR (14.05.2024)
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Preserved DNA Damage Checkpoint Pathway Protects against Complications in Long-Standing Type 1 Diabetes
Bhatt, Shweta, Gupta, Manoj K., Khamaisi, Mogher, Martinez, Rachael, Gritsenko, Marina A., Wagner, Bridget K., Guye, Patrick, Busskamp, Volker, Shirakawa, Jun, Wu, Gongxiong, Liew, Chong Wee, Clauss, Therese R., Valdez, Ivan, El Ouaamari, Abdelfattah, Dirice, Ercument, Takatani, Tomozumi, Keenan, Hillary A., Smith, Richard D., Church, George, Weiss, Ron, Wagers, Amy J., Qian, Wei-Jun, King, George L., Kulkarni, Rohit N.
Published in Cell metabolism (04.08.2015)
Published in Cell metabolism (04.08.2015)
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