Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing
Gordon, Sean P, Tseng, Elizabeth, Salamov, Asaf, Zhang, Jiwei, Meng, Xiandong, Zhao, Zhiying, Kang, Dongwan, Underwood, Jason, Grigoriev, Igor V, Figueroa, Melania, Schilling, Jonathan S, Chen, Feng, Wang, Zhong
Published in PloS one (15.07.2015)
Published in PloS one (15.07.2015)
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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
Nordberg, Henrik, Cantor, Michael, Dusheyko, Serge, Hua, Susan, Poliakov, Alexander, Shabalov, Igor, Smirnova, Tatyana, Grigoriev, Igor V, Dubchak, Inna
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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The Genome Portal of the Department of Energy Joint Genome Institute
Grigoriev, Igor V., Nordberg, Henrik, Shabalov, Igor, Aerts, Andrea, Cantor, Mike, Goodstein, David, Kuo, Alan, Minovitsky, Simon, Nikitin, Roman, Ohm, Robin A., Otillar, Robert, Poliakov, Alex, Ratnere, Igor, Riley, Robert, Smirnova, Tatyana, Rokhsar, Daniel, Dubchak, Inna
Published in Nucleic acids research (01.01.2012)
Published in Nucleic acids research (01.01.2012)
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Genome-reconstruction for eukaryotes from complex natural microbial communities
West, Patrick T, Probst, Alexander J, Grigoriev, Igor V, Thomas, Brian C, Banfield, Jillian F
Published in Genome research (01.04.2018)
Published in Genome research (01.04.2018)
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PhycoCosm, a comparative algal genomics resource
Grigoriev, Igor V, Hayes, Richard D, Calhoun, Sara, Kamel, Bishoy, Wang, Alice, Ahrendt, Steven, Dusheyko, Sergey, Nikitin, Roman, Mondo, Stephen J, Salamov, Asaf, Shabalov, Igor, Kuo, Alan
Published in Nucleic acids research (08.01.2021)
Published in Nucleic acids research (08.01.2021)
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Evolution and comparative genomics of the most common Trichoderma species
Kubicek, Christian P, Steindorff, Andrei S, Chenthamara, Komal, Manganiello, Gelsomina, Henrissat, Bernard, Zhang, Jian, Cai, Feng, Kopchinskiy, Alexey G, Kubicek, Eva M, Kuo, Alan, Baroncelli, Riccardo, Sarrocco, Sabrina, Noronha, Eliane Ferreira, Vannacci, Giovanni, Shen, Qirong, Grigoriev, Igor V, Druzhinina, Irina S
Published in BMC genomics (12.06.2019)
Published in BMC genomics (12.06.2019)
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High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis
Chen, Eric C. H., Morin, Emmanuelle, Beaudet, Denis, Noel, Jessica, Yildirir, Gokalp, Ndikumana, Steve, Charron, Philippe, St‐Onge, Camille, Giorgi, John, Krüger, Manuela, Marton, Timea, Ropars, Jeanne, Grigoriev, Igor V., Hainaut, Matthieu, Henrissat, Bernard, Roux, Christophe, Martin, Francis, Corradi, Nicolas
Published in The New phytologist (01.12.2018)
Published in The New phytologist (01.12.2018)
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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation
Min, Byoungnam, Grigoriev, Igor V, Choi, In-Geol
Published in Bioinformatics (Oxford, England) (15.09.2017)
Published in Bioinformatics (Oxford, England) (15.09.2017)
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Trichoderma : the genomics of opportunistic success
Kubicek, Christian P, Druzhinina, Irina S, Seidl-Seiboth, Verena, Herrera-Estrella, Alfredo, Horwitz, Benjamin A, Kenerley, Charles M, Monte, Enrique, Mukherjee, Prasun K, Zeilinger, Susanne, Grigoriev, Igor V
Published in Nature reviews. Microbiology (01.10.2011)
Published in Nature reviews. Microbiology (01.10.2011)
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Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi
Riley, Robert, Salamov, Asaf A., Brown, Daren W., Nagy, Laszlo G., Floudas, Dimitrios, Held, Benjamin W., Levasseur, Anthony, Lombard, Vincent, Morin, Emmanuelle, Otillar, Robert, Lindquist, Erika A., Sun, Hui, LaButti, Kurt M., Schmutz, Jeremy, Jabbour, Dina, Luoi, Hong, Baker, Scott E., Pisabarro, Antonio G., Walton, Jonathan D., Blanchette, Robert A., Henrissat, Bernard, Martin, Francis, Cullen, Dan, Hibbett, David S., Grigoriev, Igor V.
Published in Proceedings of the National Academy of Sciences - PNAS (08.07.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (08.07.2014)
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Stormy water on Mars: The distribution and saturation of atmospheric water during the dusty season
Fedorova, Anna A, Montmessin, Franck, Korablev, Oleg, Luginin, Mikhail, Trokhimovskiy, Alexander, Belyaev, Denis A, Ignatiev, Nikolay I, Lefèvre, Franck, Alday, Juan, Irwin, Patrick G J, Olsen, Kevin S, Bertaux, Jean-Loup, Millour, Ehouarn, Määttänen, Anni, Shakun, Alexey, Grigoriev, Alexey V, Patrakeev, Andrey, Korsa, Svyatoslav, Kokonkov, Nikita, Baggio, Lucio, Forget, Francois, Wilson, Colin F
Published in Science (American Association for the Advancement of Science) (17.01.2020)
Published in Science (American Association for the Advancement of Science) (17.01.2020)
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Early Diverging Fungus Mucor circinelloides Lacks Centromeric Histone CENP-A and Displays a Mosaic of Point and Regional Centromeres
Navarro-Mendoza, María Isabel, Pérez-Arques, Carlos, Panchal, Shweta, Nicolás, Francisco E., Mondo, Stephen J., Ganguly, Promit, Pangilinan, Jasmyn, Grigoriev, Igor V., Heitman, Joseph, Sanyal, Kaustuv, Garre, Victoriano
Published in Current biology (18.11.2019)
Published in Current biology (18.11.2019)
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Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles
Castanera, Raúl, López-Varas, Leticia, Borgognone, Alessandra, LaButti, Kurt, Lapidus, Alla, Schmutz, Jeremy, Grimwood, Jane, Pérez, Gúmer, Pisabarro, Antonio G, Grigoriev, Igor V, Stajich, Jason E, Ramírez, Lucía
Published in PLoS genetics (13.06.2016)
Published in PLoS genetics (13.06.2016)
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Journal Article
Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina
Morin, Emmanuelle, Miyauchi, Shingo, San Clemente, Hélène, Chen, Eric C. H., Pelin, Adrian, de la Providencia, Ivan, Ndikumana, Steve, Beaudet, Denis, Hainaut, Mathieu, Drula, Elodie, Kuo, Alan, Tang, Nianwu, Roy, Sébastien, Viala, Julie, Henrissat, Bernard, Grigoriev, Igor V., Corradi, Nicolas, Roux, Christophe, Martin, Francis M.
Published in The New phytologist (01.05.2019)
Published in The New phytologist (01.05.2019)
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Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes
Solomon, Kevin V., Haitjema, Charles H., Henske, John K., Gilmore, Sean P., Borges-Rivera, Diego, Lipzen, Anna, Brewer, Heather M., Purvine, Samuel O., Wright, Aaron T., Theodorou, Michael K., Grigoriev, Igor V., Regev, Aviv, Thompson, Dawn A., O'Malley, Michelle A.
Published in Science (American Association for the Advancement of Science) (11.03.2016)
Published in Science (American Association for the Advancement of Science) (11.03.2016)
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Transcription factor Amr1 induces melanin biosynthesis and suppresses virulence in Alternaria brassicicola
Cho, Yangrae, Srivastava, Akhil, Ohm, Robin A, Lawrence, Christopher B, Wang, Koon-Hui, Grigoriev, Igor V, Marahatta, Sharadchandra P
Published in PLoS pathogens (01.10.2012)
Published in PLoS pathogens (01.10.2012)
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Fungal and plant gene expression in the Tulasnella calospora–Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas
Fochi, Valeria, Chitarra, Walter, Kohler, Annegret, Voyron, Samuele, Singan, Vasanth R., Lindquist, Erika A., Barry, Kerrie W., Girlanda, Mariangela, Grigoriev, Igor V., Martin, Francis, Balestrini, Raffaella, Perotto, Silvia
Published in The New phytologist (01.01.2017)
Published in The New phytologist (01.01.2017)
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Phylogenetic and phylogenomic overview of the Polyporales
Binder, Manfred, Justo, Alfredo, Riley, Robert, Salamov, Asaf, Lopez-Giraldez, Francesc, Sjökvist, Elisabet, Copeland, Alex, Foster, Brian, Sun, Hui, Larsson, Ellen, Larsson, Karl-Henrik, Townsend, Jeffrey, Grigoriev, Igor V., Hibbett, David S.
Published in Mycologia (01.11.2013)
Published in Mycologia (01.11.2013)
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Genetic determinants of endophytism in the Arabidopsis root mycobiome
Mesny, Fantin, Miyauchi, Shingo, Thiergart, Thorsten, Pickel, Brigitte, Atanasova, Lea, Karlsson, Magnus, Hüttel, Bruno, Barry, Kerrie W, Haridas, Sajeet, Chen, Cindy, Bauer, Diane, Andreopoulos, William, Pangilinan, Jasmyn, LaButti, Kurt, Riley, Robert, Lipzen, Anna, Clum, Alicia, Drula, Elodie, Henrissat, Bernard, Kohler, Annegret, Grigoriev, Igor V, Martin, Francis M, Hacquard, Stéphane
Published in Nature communications (10.12.2021)
Published in Nature communications (10.12.2021)
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