Properties of MHC class I presented peptides that enhance immunogenicity
Calis, Jorg J A, Maybeno, Matt, Greenbaum, Jason A, Weiskopf, Daniela, De Silva, Aruna D, Sette, Alessandro, Keşmir, Can, Peters, Bjoern
Published in PLoS computational biology (01.10.2013)
Published in PLoS computational biology (01.10.2013)
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Journal Article
Improved methods for predicting peptide binding affinity to MHC class II molecules
Jensen, Kamilla Kjærgaard, Andreatta, Massimo, Marcatili, Paolo, Buus, Søren, Greenbaum, Jason A., Yan, Zhen, Sette, Alessandro, Peters, Bjoern, Nielsen, Morten
Published in Immunology (01.07.2018)
Published in Immunology (01.07.2018)
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Journal Article
Impact of Genetic Polymorphisms on Human Immune Cell Gene Expression
Schmiedel, Benjamin J., Singh, Divya, Madrigal, Ariel, Valdovino-Gonzalez, Alan G., White, Brandie M., Zapardiel-Gonzalo, Jose, Ha, Brendan, Altay, Gokmen, Greenbaum, Jason A., McVicker, Graham, Seumois, Grégory, Rao, Anjana, Kronenberg, Mitchell, Peters, Bjoern, Vijayanand, Pandurangan
Published in Cell (29.11.2018)
Published in Cell (29.11.2018)
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Journal Article
IEDB-AR: immune epitope database-analysis resource in 2019
Dhanda, Sandeep Kumar, Mahajan, Swapnil, Paul, Sinu, Yan, Zhen, Kim, Haeuk, Jespersen, Martin Closter, Jurtz, Vanessa, Andreatta, Massimo, Greenbaum, Jason A, Marcatili, Paolo, Sette, Alessandro, Nielsen, Morten, Peters, Bjoern
Published in Nucleic acids research (02.07.2019)
Published in Nucleic acids research (02.07.2019)
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Journal Article
Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals
Grifoni, Alba, Weiskopf, Daniela, Ramirez, Sydney I., Mateus, Jose, Dan, Jennifer M., Moderbacher, Carolyn Rydyznski, Rawlings, Stephen A., Sutherland, Aaron, Premkumar, Lakshmanane, Jadi, Ramesh S., Marrama, Daniel, de Silva, Aravinda M., Frazier, April, Carlin, Aaron F., Greenbaum, Jason A., Peters, Bjoern, Krammer, Florian, Smith, Davey M., Crotty, Shane, Sette, Alessandro
Published in Cell (25.06.2020)
Published in Cell (25.06.2020)
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Journal Article
Web Resource
The immune epitope database (IEDB) 3.0
Vita, Randi, Overton, James A, Greenbaum, Jason A, Ponomarenko, Julia, Clark, Jason D, Cantrell, Jason R, Wheeler, Daniel K, Gabbard, Joseph L, Hix, Deborah, Sette, Alessandro, Peters, Bjoern
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
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Journal Article
An automated benchmarking platform for MHC class II binding prediction methods
Andreatta, Massimo, Trolle, Thomas, Yan, Zhen, Greenbaum, Jason A, Peters, Bjoern, Nielsen, Morten
Published in Bioinformatics (01.05.2018)
Published in Bioinformatics (01.05.2018)
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Journal Article
Unique phenotypes and clonal expansions of human CD4 effector memory T cells re-expressing CD45RA
Tian, Yuan, Babor, Mariana, Lane, Jerome, Schulten, Veronique, Patil, Veena S., Seumois, Grégory, Rosales, Sandy L., Fu, Zheng, Picarda, Gaelle, Burel, Julie, Zapardiel-Gonzalo, Jose, Tennekoon, Rashika N., De Silva, Aruna D., Premawansa, Sunil, Premawansa, Gayani, Wijewickrama, Ananda, Greenbaum, Jason A., Vijayanand, Pandurangan, Weiskopf, Daniela, Sette, Alessandro, Peters, Bjoern
Published in Nature communications (13.11.2017)
Published in Nature communications (13.11.2017)
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Journal Article
Memory T cells in latent Mycobacterium tuberculosis infection are directed against three antigenic islands and largely contained in a CXCR3+CCR6+ Th1 subset
Lindestam Arlehamn, Cecilia S, Gerasimova, Anna, Mele, Federico, Henderson, Ryan, Swann, Justine, Greenbaum, Jason A, Kim, Yohan, Sidney, John, James, Eddie A, Taplitz, Randy, McKinney, Denise M, Kwok, William W, Grey, Howard, Sallusto, Federica, Peters, Bjoern, Sette, Alessandro
Published in PLoS pathogens (01.01.2013)
Published in PLoS pathogens (01.01.2013)
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Journal Article
Immune Epitope Database 2.0
Vita, Randi, Zarebski, Laura, Greenbaum, Jason A, Emami, Hussein, Hoof, Ilka, Salimi, Nima, Damle, Rohini, Sette, Alessandro, Peters, Bjoern
Published in Nucleic acids research (01.01.2010)
Published in Nucleic acids research (01.01.2010)
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Journal Article
Late-rising CD4 T cells resolve mouse cytomegalovirus persistent replication in the salivary gland
Brunel, Simon, Picarda, Gaelle, Gupta, Ankan, Ghosh, Raima, McDonald, Bryan, El Morabiti, Rachid, Jiang, Wenjin, Greenbaum, Jason A, Adler, Barbara, Seumois, Gregory, Croft, Michael, Vijayanand, Pandurangan, Benedict, Chris A
Published in PLoS pathogens (01.01.2024)
Published in PLoS pathogens (01.01.2024)
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Journal Article
Comprehensive analysis of dengue virus-specific responses supports an HLA-linked protective role for CD8⁺ T cells
Weiskopf, Daniela, Angelo, Michael A, de Azeredo, Elzinandes L, Sidney, John, Greenbaum, Jason A, Fernando, Anira N, Broadwater, Anne, Kolla, Ravi V, De Silva, Aruna D, de Silva, Aravinda M, Mattia, Kimberly A, Doranz, Benjamin J, Grey, Howard M, Shresta, Sujan, Peters, Bjoern, Sette, Alessandro
Published in Proceedings of the National Academy of Sciences - PNAS (28.05.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (28.05.2013)
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Journal Article
Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases
Tarke, Alison, Sidney, John, Kidd, Conner K., Dan, Jennifer M., Ramirez, Sydney I., Yu, Esther Dawen, Mateus, Jose, da Silva Antunes, Ricardo, Moore, Erin, Rubiro, Paul, Methot, Nils, Phillips, Elizabeth, Mallal, Simon, Frazier, April, Rawlings, Stephen A., Greenbaum, Jason A., Peters, Bjoern, Smith, Davey M., Crotty, Shane, Weiskopf, Daniela, Grifoni, Alba, Sette, Alessandro
Published in Cell reports. Medicine (16.02.2021)
Published in Cell reports. Medicine (16.02.2021)
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Journal Article
Automated benchmarking of peptide-MHC class I binding predictions
Trolle, Thomas, Metushi, Imir G, Greenbaum, Jason A, Kim, Yohan, Sidney, John, Lund, Ole, Sette, Alessandro, Peters, Bjoern, Nielsen, Morten
Published in Bioinformatics (01.07.2015)
Published in Bioinformatics (01.07.2015)
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Journal Article
Next-generation IEDB tools: a platform for epitope prediction and analysis
Yan, Zhen, Kim, Kevin, Kim, Haeuk, Ha, Brendan, Gambiez, Anaïs, Bennett, Jason, de Almeida Mendes, Marcus Fabiano, Trevizani, Raphael, Mahita, Jarjapu, Richardson, Eve, Marrama, Daniel, Blazeska, Nina, Koşaloğlu-Yalçın, Zeynep, Nielsen, Morten, Sette, Alessandro, Peters, Bjoern, Greenbaum, Jason A
Published in Nucleic acids research (23.05.2024)
Published in Nucleic acids research (23.05.2024)
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Journal Article
TCRMatch: Predicting T-Cell Receptor Specificity Based on Sequence Similarity to Previously Characterized Receptors
Chronister, William D, Crinklaw, Austin, Mahajan, Swapnil, Vita, Randi, Koşaloğlu-Yalçın, Zeynep, Yan, Zhen, Greenbaum, Jason A, Jessen, Leon E, Nielsen, Morten, Christley, Scott, Cowell, Lindsay G, Sette, Alessandro, Peters, Bjoern
Published in Frontiers in immunology (11.03.2021)
Published in Frontiers in immunology (11.03.2021)
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Journal Article
A comprehensive analysis of the IEDB MHC class-I automated benchmark
Trevizani, Raphael, Yan, Zhen, Greenbaum, Jason A, Sette, Alessandro, Nielsen, Morten, Peters, Bjoern
Published in Briefings in bioinformatics (18.07.2022)
Published in Briefings in bioinformatics (18.07.2022)
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Journal Article
Pre-Existing Immunity against Swine-Origin H1N1 Influenza Viruses in the General Human Population
Greenbaum, Jason A., Kotturi, Maya F., Kim, Yohan, Oseroff, Carla, Vaughan, Kerrie, Salimi, Nima, Vita, Randi, Ponomarenko, Julia, Scheuermann, Richard H., Sette, Alessandro, Peters, Bjoern
Published in Proceedings of the National Academy of Sciences - PNAS (01.12.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (01.12.2009)
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Journal Article
Linked CD4+/CD8+ T cell neoantigen vaccination overcomes immune checkpoint blockade resistance and enables tumor regression
Dolina, Joseph S., Lee, Joey, Brightman, Spencer E., McArdle, Sara, Hall, Samantha M., Thota, Rukman R., Zavala, Karla S., Lanka, Manasa, Ramamoorthy Premlal, Ashmitaa Logandha, Greenbaum, Jason A., Cohen, Ezra E. W., Peters, Bjoern, Schoenberger, Stephen P.
Published in The Journal of clinical investigation (01.09.2023)
Published in The Journal of clinical investigation (01.09.2023)
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Journal Article
Towards the prediction of non-peptidic epitopes
Zierep, Paul F, Vita, Randi, Blazeska, Nina, Moumbock, Aurélien F A, Greenbaum, Jason A, Peters, Bjoern, Günther, Stefan
Published in PLoS computational biology (01.02.2022)
Published in PLoS computational biology (01.02.2022)
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