Quantitative single cell analysis of cell population dynamics during submandibular salivary gland development and differentiation
Nelson, Deirdre A, Manhardt, Charles, Kamath, Vidya, Sui, Yunxia, Santamaria-Pang, Alberto, Can, Ali, Bello, Musodiq, Corwin, Alex, Dinn, Sean R, Lazare, Michael, Gervais, Elise M, Sequeira, Sharon J, Peters, Sarah B, Ginty, Fiona, Gerdes, Michael J, Larsen, Melinda
Published in Biology open (15.05.2013)
Published in Biology open (15.05.2013)
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Journal Article
Abstract LB-088: Exploratory multiplex tissue image analysis of the impact of heterogeneity in the microenvironment of primary colorectal cancer on apoptosis markers in patients
Lindner, Andreas Urlich, Salvucci, Manuela, Stachtea, Xanthi, Carberry, Steven, Dunne, Philip D., Sood, Anup, McDonough, Elizabeth, Cho, Sanghee, Laurent-Puig, Pierre, Schaeybroeck, Sandra Van, Salto-Tellez, Manuel, Graf, John F., Rehm, Markus, Lawler, Mark, Longley, Daniel B., Fiona, Fiona Ginty, Prehn, Jochen H.
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Journal Article
Prolyl 4-hydroxylase alpha 1 protein expression risk-stratifies early stage colorectal cancer
Tanaka, Atsushi, Zhou, Yihua, Shia, Jinru, Ginty, Fiona, Ogawa, Makiko, Klimstra, David S., Hendrickson, Ronald C., Wang, Julia Y., Roehrl, Michael H.
Published in Oncotarget (25.02.2020)
Published in Oncotarget (25.02.2020)
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Journal Article
Pointwise mutual information quantifies intratumor heterogeneity in tissue sections labeled with multiple fluorescent biomarkers
Spagnolo, Daniel M., Gyanchandani, Rekha, Al-Kofahi, Yousef, Stern, Andrew M., Lezon, Timothy R., Gough, Albert, Meyer, Dan E., Ginty, Fiona, Sarachan, Brion, Fine, Jeffrey, Lee, Adrian V., Taylor, D. Lansing, Chennubhotla, S. Chakra
Published in Journal of pathology informatics (2016)
Published in Journal of pathology informatics (2016)
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Journal Article
The effect of dietary sodium intake on biochemical markers of bone metabolism in young women
Ginty, Fiona, Flynn, Albert, Cashman, Kevin D.
Published in British journal of nutrition (01.04.1998)
Published in British journal of nutrition (01.04.1998)
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Journal Article
Topographical body fat distribution links to amino acid and lipid metabolism in healthy obese women [corrected]
Martin, Francois-Pierre J, Montoliu, Ivan, Collino, Sebastiano, Scherer, Max, Guy, Philippe, Tavazzi, Isabelle, Thorimbert, Anita, Moco, Sofia, Rothney, Megan P, Ergun, David L, Beaumont, Maurice, Ginty, Fiona, Qanadli, Salah D, Favre, Lucie, Giusti, Vittorio, Rezzi, Serge
Published in PloS one (2013)
Published in PloS one (2013)
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Journal Article
Abstract 1448: Cell DIVE™: A robust and standardized platform for multiplexed whole slide imaging and single cell analysis
Corwin, Alex, McDonough, Elizabeth, Surrette, Christine, Dumpuri, Prashanth, Sood, Anup, Ginty, Fiona M.
Published in Cancer research (Chicago, Ill.) (15.08.2020)
Published in Cancer research (Chicago, Ill.) (15.08.2020)
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Journal Article
Pathobiology of Candida auris infection analyzed by multiplexed imaging and single cell analysis
Chrystal Chadwick, Magdia De Jesus, Fiona Ginty, Jessica S. Martinez
Published in PloS one (01.01.2024)
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Published in PloS one (01.01.2024)
Journal Article
In Situ Multiplex Immunofluorescence Analysis of Plasma Cell Myeloma Tissue Sections
Sood, Anup, Ginty, Fiona, Chadwick, Chrystal, Janz, Siegfried, Holman, Carol
Published in American journal of clinical pathology (21.09.2018)
Published in American journal of clinical pathology (21.09.2018)
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Journal Article
Spatial effects of infiltrating T cells on neighbouring cancer cells and prognosis in stage III CRC patients
Azimi, Mohammadreza, Cho, Sanghee, Bozkurt, Emir, McDonough, Elizabeth, Kisakol, Batuhan, Matveeva, Anna, Salvucci, Manuela, Dussmann, Heiko, McDade, Simon, Firat, Canan, Urganci, Nil, Shia, Jinru, Longley, Daniel B, Ginty, Fiona, Prehn, Jochen HM
Published in The Journal of pathology (01.10.2024)
Published in The Journal of pathology (01.10.2024)
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Journal Article
Identification of unique rectal cancer-specific subtypes
Kisakol, Batuhan, Matveeva, Anna, Salvucci, Manuela, Kel, Alexander, McDonough, Elizabeth, Ginty, Fiona, Longley, Daniel B., Prehn, Jochen H. M.
Published in British journal of cancer (27.05.2024)
Published in British journal of cancer (27.05.2024)
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Journal Article
Anatomical structures, cell types and biomarkers of the Human Reference Atlas
Börner, Katy, Teichmann, Sarah A., Quardokus, Ellen M., Gee, James C., Browne, Kristen, Osumi-Sutherland, David, Herr, Bruce W., Bueckle, Andreas, Paul, Hrishikesh, Haniffa, Muzlifah, Jardine, Laura, Bernard, Amy, Ding, Song-Lin, Miller, Jeremy A., Lin, Shin, Halushka, Marc K., Boppana, Avinash, Longacre, Teri A., Hickey, John, Lin, Yiing, Valerius, M. Todd, He, Yongqun, Pryhuber, Gloria, Sun, Xin, Jorgensen, Marda, Radtke, Andrea J., Wasserfall, Clive, Ginty, Fiona, Ho, Jonhan, Sunshine, Joel, Beuschel, Rebecca T., Brusko, Maigan, Lee, Sujin, Malhotra, Rajeev, Jain, Sanjay, Weber, Griffin
Published in Nature cell biology (01.11.2021)
Published in Nature cell biology (01.11.2021)
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Journal Article
FLINO: a new method for immunofluorescence bioimage normalization
Graf, John, Cho, Sanghee, McDonough, Elizabeth, Corwin, Alex, Sood, Anup, Lindner, Andreas, Salvucci, Manuela, Stachtea, Xanthi, Van Schaeybroeck, Sandra, Dunne, Philip D, Laurent-Puig, Pierre, Longley, Daniel, Prehn, Jochen H M, Ginty, Fiona
Published in Bioinformatics (03.01.2022)
Published in Bioinformatics (03.01.2022)
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Journal Article
Single-cell heterogeneity in ductal carcinoma in situ of breast
Gerdes, Michael J, Gökmen-Polar, Yesim, Sui, Yunxia, Pang, Alberto Santamaria, LaPlante, Nicole, Harris, Adrian L, Tan, Puay-Hoon, Ginty, Fiona, Badve, Sunil S
Published in Modern pathology (01.03.2018)
Published in Modern pathology (01.03.2018)
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Journal Article
Multiplexed Immunofluorescence Imaging Reveals an Immune Rich Tumor Microenvironment in Mucinous Rectal Cancer Characterized by Increased Lymphocyte Infiltration and Enhanced PD-1 Expression
Duggan, William P., Kisakol, Batuhan, O’Connell, Emer, Matveeva, Anna, O’Grady, Tony, McDonough, Elizabeth, Lindner, Andreas U., McNamara, Deborah, Longley, Daniel, Ginty, Fiona, Burke, John P., Prehn, Jochen H. M.
Published in Diseases of the colon & rectum (17.11.2022)
Published in Diseases of the colon & rectum (17.11.2022)
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Journal Article
Abstract PO-084: Protein marker heterogeneity in breast cancer subtypes measured using immunofluorescence protein multiplexing and quantitative, single cell image analysis
Cheung, Alison M., Wang, Dan, Liu, Kela, Ginty, Fiona, Nofech-Mozes, Sharon, Bayani, Jane, Bartlett, John M.S., Martel, Anne, Yaffe, Martin J.
Published in Cancer research (Chicago, Ill.) (01.11.2020)
Published in Cancer research (Chicago, Ill.) (01.11.2020)
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Journal Article
Image analytic algorithms for automated cell segmentation quality control
Al-Kofahi, Yousef, Fiona, Ginty
Published in 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018) (01.04.2018)
Published in 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018) (01.04.2018)
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Conference Proceeding
Abstract 1642: Spatial proteomics with hyperplexed fluorescence imaging predicts risk of colorectal cancer recurrence and infers recurrence-specific protein-protein networks
Uttam, Shikhar, Stern, Andrew M., Furman, Samantha A., Pullara, Filippo, Ginty, Fiona, Taylor, D. Lansing, Chennubhotla, S. Chakra
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Journal Article
Abstract 4925: Spatial heterogeneity of tumor boundary in mammograms is prognostic of recurrence in triple negative breast cancer (TNBC)
Ghose, Soumya, Davis, Cynthia, Cho, Sanghee, Polar, Yesim, Ginty, Fiona, Badve, Sunil
Published in Cancer research (Chicago, Ill.) (22.03.2024)
Published in Cancer research (Chicago, Ill.) (22.03.2024)
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Journal Article
Abstract 2676: Hyperplexed immunofluorescence analysis (Cell DIVETM) of immune-related tumor heterogeneity in stage III colorectal cancer
Stachtea, Xanthi, Lindner, Andreas, Salvucci, Manuela, Cho, Sanghee, Sood, Anup, McDonough, Elizabeth, Santamaria-Pang, Alberto, Graf, John, Dunne, Philip, Lawler, Mark, Prehn, Jochen, Ginty, Fiona, Longley, Daniel
Published in Cancer research (Chicago, Ill.) (15.08.2020)
Published in Cancer research (Chicago, Ill.) (15.08.2020)
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Journal Article