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Salgia, Nicholas J., Bergerot, Paulo G., Maia, Manuel Caitano, Dizman, Nazli, Hsu, JoAnn, Gillece, John D., Folkerts, Megan, Reining, Lauren, Trent, Jeffrey, Highlander, Sarah K., Pal, Sumanta K.
Published in European urology (01.10.2020)
Published in European urology (01.10.2020)
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More than 50% of Clostridium difficile Isolates from Pet Dogs in Flagstaff, USA, Carry Toxigenic Genotypes
Stone, Nathan E, Sidak-Loftis, Lindsay C, Sahl, Jason W, Vazquez, Adam J, Wiggins, Kristin B, Gillece, John D, Hicks, Nathan D, Schupp, James M, Busch, Joseph D, Keim, Paul, Wagner, David M
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Published in PloS one (10.10.2016)
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Multi-faceted metagenomic analysis of spacecraft associated surfaces reveal planetary protection relevant microbial composition
Highlander, Sarah K, Wood, Jason M, Gillece, John D, Folkerts, Megan, Fofanov, Viacheslav, Furstenau, Tara, Singh, Nitin K, Guan, Lisa, Seuylemezian, Arman, Benardini, James N, Engelthaler, David M, Venkateswaran, Kasthuri, Keim, Paul S
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Evolution of a pathogen: a comparative genomics analysis identifies a genetic pathway to pathogenesis in Acinetobacter
Sahl, Jason W, Gillece, John D, Schupp, James M, Waddell, Victor G, Driebe, Elizabeth M, Engelthaler, David M, Keim, Paul
Published in PloS one (24.01.2013)
Published in PloS one (24.01.2013)
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A Phase II Clinical Trial of Pembrolizumab and Enobosarm in Patients with Androgen Receptor‐Positive Metastatic Triple‐Negative Breast Cancer
Yuan, Yuan, Lee, Jin Sun, Yost, Susan E., Frankel, Paul H., Ruel, Christopher, Egelston, Colt A., Guo, Weihua, Gillece, John D., Folkerts, Megan, Reining, Lauren, Highlander, Sarah K., Robinson, Kim, Padam, Simran, Martinez, Norma, Tang, Aileen, Schmolze, Daniel, Waisman, James, Sedrak, Mina, Lee, Peter P., Mortimer, Joanne
Published in The oncologist (Dayton, Ohio) (01.02.2021)
Published in The oncologist (Dayton, Ohio) (01.02.2021)
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CYP8B1 downregulation mediates the metabolic effects of vertical sleeve gastrectomy in mice
Liu, Yanjun, Tu, Jui, Shi, Linsen, Fang, Zhipeng, Fan, Mingjie, Zhang, Jianying, Ding, Lili, Chen, Yiqiang, Wang, Yangmeng, Zhang, Eryun, Xu, Senlin, Sharma, Nisha, Gillece, John D, Reining, Lauren J, Jin, Lihua, Huang, Wendong
Published in Hepatology (Baltimore, Md.) (01.05.2024)
Published in Hepatology (Baltimore, Md.) (01.05.2024)
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The Role of Geography, Diet, and Host Phylogeny on the Gut Microbiome in the Hawaiian Honeycreeper Radiation
Costantini, Maria S., Videvall, Elin, Foster, Jeffrey T., Medeiros, Matthew C. I., Gillece, John D., Paxton, Eben H., Crampton, Lisa H., Mounce, Hanna L., Wang, Alex X., Fleischer, Robert C., Campana, Michael G., Reed, Floyd A.
Published in Ecology and evolution (01.10.2024)
Published in Ecology and evolution (01.10.2024)
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Whole genome sequence analysis of Cryptococcus gattii from the Pacific Northwest reveals unexpected diversity
Gillece, John D, Schupp, James M, Balajee, S Arunmozhi, Harris, Julie, Pearson, Talima, Yan, Yongpan, Keim, Paul, DeBess, Emilio, Marsden-Haug, Nicola, Wohrle, Ron, Engelthaler, David M, Lockhart, Shawn R
Published in PloS one (07.12.2011)
Published in PloS one (07.12.2011)
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Rapid Drug Susceptibility Testing of Drug-Resistant Mycobacterium tuberculosis Isolates Directly from Clinical Samples by Use of Amplicon Sequencing: a Proof-of-Concept Study
Colman, Rebecca E, Anderson, Julia, Lemmer, Darrin, Lehmkuhl, Erik, Georghiou, Sophia B, Heaton, Hannah, Wiggins, Kristin, Gillece, John D, Schupp, James M, Catanzaro, Donald G, Crudu, Valeriu, Cohen, Ted, Rodwell, Timothy C, Engelthaler, David M
Published in Journal of clinical microbiology (01.08.2016)
Published in Journal of clinical microbiology (01.08.2016)
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Staphylococcus aureus CC398: host adaptation and emergence of methicillin resistance in livestock
Price, Lance B, Stegger, Marc, Hasman, Henrik, Aziz, Maliha, Larsen, Jesper, Andersen, Paal Skytt, Pearson, Talima, Waters, Andrew E, Foster, Jeffrey T, Schupp, James, Gillece, John, Driebe, Elizabeth, Liu, Cindy M, Springer, Burkhard, Zdovc, Irena, Battisti, Antonio, Franco, Alessia, Zmudzki, Jacek, Schwarz, Stefan, Butaye, Patrick, Jouy, Eric, Pomba, Constanca, Porrero, M Concepción, Ruimy, Raymond, Smith, Tara C, Robinson, D Ashley, Weese, J Scott, Arriola, Carmen Sofia, Yu, Fangyou, Laurent, Frederic, Keim, Paul, Skov, Robert, Aarestrup, Frank M
Published in mBio (01.01.2012)
Published in mBio (01.01.2012)
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Randomized trial assessing impact of probiotic supplementation on gut microbiome and clinical outcome from targeted therapy in metastatic renal cell carcinoma
Dizman, Nazli, Hsu, JoAnn, Bergerot, Paulo G., Gillece, John D., Folkerts, Megan, Reining, Lauren, Trent, Jeffrey, Highlander, Sarah K., Pal, Sumanta K.
Published in Cancer medicine (Malden, MA) (01.01.2021)
Published in Cancer medicine (Malden, MA) (01.01.2021)
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A Bacillus anthracis Genome Sequence from the Sverdlovsk 1979 Autopsy Specimens
Sahl, Jason W, Pearson, Talima, Okinaka, Richard, Schupp, James M, Gillece, John D, Heaton, Hannah, Birdsell, Dawn, Hepp, Crystal, Fofanov, Viacheslav, Noseda, Ramón, Fasanella, Antonio, Hoffmaster, Alex, Wagner, David M, Keim, Paul
Published in mBio (27.09.2016)
Published in mBio (27.09.2016)
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Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage
Muller, Emilie E. L., Pinel, Nicolás, Laczny, Cédric C., Hoopmann, Michael R., Narayanasamy, Shaman, Lebrun, Laura A., Roume, Hugo, Lin, Jake, May, Patrick, Hicks, Nathan D., Heintz-Buschart, Anna, Wampach, Linda, Liu, Cindy M., Price, Lance B., Gillece, John D., Guignard, Cédric, Schupp, James M., Vlassis, Nikos, Baliga, Nitin S., Moritz, Robert L., Keim, Paul S., Wilmes, Paul
Published in Nature communications (26.11.2014)
Published in Nature communications (26.11.2014)
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Mapping and comparing bacterial microbiota in the sinonasal cavity of healthy, allergic rhinitis, and chronic rhinosinusitis subjects
Lal, Devyani, Keim, Paul, Delisle, Josie, Barker, Bridget, Rank, Matthew A., Chia, Nicholas, Schupp, James M., Gillece, John D., Cope, Emily K.
Published in International forum of allergy & rhinology (01.06.2017)
Published in International forum of allergy & rhinology (01.06.2017)
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NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats
Sahl, Jason W, Lemmer, Darrin, Travis, Jason, Schupp, James M, Gillece, John D, Aziz, Maliha, Driebe, Elizabeth M, Drees, Kevin P, Hicks, Nathan D, Williamson, Charles Hall Davis, Hepp, Crystal M, Smith, David Earl, Roe, Chandler, Engelthaler, David M, Wagner, David M, Keim, Paul
Published in Microbial genomics (01.08.2016)
Published in Microbial genomics (01.08.2016)
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Analysis of Gut Microbiome Using Explainable Machine Learning Predicts Risk of Diarrhea Associated With Tyrosine Kinase Inhibitor Neratinib: A Pilot Study
Wong, Chi Wah, Yost, Susan E, Lee, Jin Sun, Gillece, John D, Folkerts, Megan, Reining, Lauren, Highlander, Sarah K, Eftekhari, Zahra, Mortimer, Joanne, Yuan, Yuan
Published in Frontiers in oncology (10.03.2021)
Published in Frontiers in oncology (10.03.2021)
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Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak
Hendriksen, Rene S, Price, Lance B, Schupp, James M, Gillece, John D, Kaas, Rolf S, Engelthaler, David M, Bortolaia, Valeria, Pearson, Talima, Waters, Andrew E, Upadhyay, Bishnu Prasad, Shrestha, Sirjana Devi, Adhikari, Shailaja, Shakya, Geeta, Keim, Paul S, Aarestrup, Frank M
Published in mBio (2011)
Published in mBio (2011)
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Comparison of Brucella abortus population structure based on genotyping methods with different levels of resolution
Pereira, Carine R., Neia, Raquel C., Silva, Saulo B., Williamson, Charles H.D., Gillece, John D., O'Callaghan, David, Foster, Jeffrey T., Oliveira, Izabela R.C., Bueno Filho, Júlio S.S., Lage, Andrey P., Azevedo, Vasco A.C., Dorneles, Elaine M.S.
Published in Journal of microbiological methods (01.08.2023)
Published in Journal of microbiological methods (01.08.2023)
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Phylogeographic, genomic, and meropenem susceptibility analysis of Burkholderia ubonensis
Price, Erin P, Sarovich, Derek S, Webb, Jessica R, Hall, Carina M, Jaramillo, Sierra A, Sahl, Jason W, Kaestli, Mirjam, Mayo, Mark, Harrington, Glenda, Baker, Anthony L, Sidak-Loftis, Lindsay C, Settles, Erik W, Lummis, Madeline, Schupp, James M, Gillece, John D, Tuanyok, Apichai, Warner, Jeffrey, Busch, Joseph D, Keim, Paul, Currie, Bart J, Wagner, David M
Published in PLoS neglected tropical diseases (14.09.2017)
Published in PLoS neglected tropical diseases (14.09.2017)
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Genome Sequence of “Candidatus Microthrix parvicella” Bio17-1, a Long-Chain-Fatty-Acid-Accumulating Filamentous Actinobacterium from a Biological Wastewater Treatment Plant
MULLER, Emilie E. L, PINEL, Nicolás, KORLACH, Jonas, KEIM, Paul S, WILMES, Paul, GILLECE, John D, SCHUPP, James M, PRICE, Lance B, ENGELTHALER, David M, LEVANTESI, Caterina, TANDOI, Valter, LUONG, Khai, BALIGA, Nitin S
Published in Journal of Bacteriology (01.12.2012)
Published in Journal of Bacteriology (01.12.2012)
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