Single-Cell Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity
Gaublomme, Jellert T., Yosef, Nir, Lee, Youjin, Gertner, Rona S., Yang, Li V., Wu, Chuan, Pandolfi, Pier Paolo, Mak, Tak, Satija, Rahul, Shalek, Alex K., Kuchroo, Vijay K., Park, Hongkun, Regev, Aviv
Published in Cell (03.12.2015)
Published in Cell (03.12.2015)
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Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells
Shalek, Alex K., Satija, Rahul, Adiconis, Xian, Gertner, Rona S., Gaublomme, Jellert T., Raychowdhury, Raktima, Schwartz, Schraga, Yosef, Nir, Malboeuf, Christine, Lu, Diana, Trombetta, John J., Gennert, Dave, Gnirke, Andreas, Goren, Alon, Hacohen, Nir, Levin, Joshua Z., Park, Hongkun, Regev, Aviv
Published in Nature (London) (13.06.2013)
Published in Nature (London) (13.06.2013)
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Journal Article
Single-cell RNA-seq reveals dynamic paracrine control of cellular variation
Shalek, Alex K., Satija, Rahul, Shuga, Joe, Trombetta, John J., Gennert, Dave, Lu, Diana, Chen, Peilin, Gertner, Rona S., Gaublomme, Jellert T., Yosef, Nir, Schwartz, Schraga, Fowler, Brian, Weaver, Suzanne, Wang, Jing, Wang, Xiaohui, Ding, Ruihua, Raychowdhury, Raktima, Friedman, Nir, Hacohen, Nir, Park, Hongkun, May, Andrew P., Regev, Aviv
Published in Nature (London) (19.06.2014)
Published in Nature (London) (19.06.2014)
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Journal Article
Nuclei multiplexing with barcoded antibodies for single-nucleus genomics
Gaublomme, Jellert T., Li, Bo, McCabe, Cristin, Knecht, Abigail, Yang, Yiming, Drokhlyansky, Eugene, Van Wittenberghe, Nicholas, Waldman, Julia, Dionne, Danielle, Nguyen, Lan, De Jager, Philip L., Yeung, Bertrand, Zhao, Xinfang, Habib, Naomi, Rozenblatt-Rosen, Orit, Regev, Aviv
Published in Nature communications (02.07.2019)
Published in Nature communications (02.07.2019)
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Promotion of cholangiocarcinoma growth by diverse cancer-associated fibroblast subpopulations
Affo, Silvia, Nair, Ajay, Brundu, Francesco, Ravichandra, Aashreya, Bhattacharjee, Sonakshi, Matsuda, Michitaka, Chin, LiKang, Filliol, Aveline, Wen, Wen, Song, Xinhua, Decker, Aubrianna, Worley, Jeremy, Caviglia, Jorge Matias, Yu, Lexing, Yin, Deqi, Saito, Yoshinobu, Savage, Thomas, Wells, Rebecca G., Mack, Matthias, Zender, Lars, Arpaia, Nicholas, Remotti, Helen E., Rabadan, Raul, Sims, Peter, Leblond, Anne-Laure, Weber, Achim, Riener, Marc-Oliver, Stockwell, Brent R., Gaublomme, Jellert, Llovet, Josep M., Kalluri, Raghu, Michalopoulos, George K., Seki, Ekihiro, Sia, Daniela, Chen, Xin, Califano, Andrea, Schwabe, Robert F.
Published in Cancer cell (14.06.2021)
Published in Cancer cell (14.06.2021)
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Nanowire-Mediated Delivery Enables Functional Interrogation of Primary Immune Cells: Application to the Analysis of Chronic Lymphocytic Leukemia
Shalek, Alex K, Gaublomme, Jellert T, Wang, Lili, Yosef, Nir, Chevrier, Nicolas, Andersen, Mette S, Robinson, Jacob T, Pochet, Nathalie, Neuberg, Donna, Gertner, Rona S, Amit, Ido, Brown, Jennifer R, Hacohen, Nir, Regev, Aviv, Wu, Catherine J, Park, Hongkun
Published in Nano letters (12.12.2012)
Published in Nano letters (12.12.2012)
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Journal Article
Probing Enzymatic Activity inside Living Cells Using a Nanowire–Cell “Sandwich” Assay
Na, Yu-Ran, Kim, So Yeon, Gaublomme, Jellert T, Shalek, Alex K, Jorgolli, Marsela, Park, Hongkun, Yang, Eun Gyeong
Published in Nano letters (09.01.2013)
Published in Nano letters (09.01.2013)
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Mapping multimodal phenotypes to perturbations in cells and tissue with CRISPRmap
Gu, Jiacheng, Iyer, Abhishek, Wesley, Ben, Taglialatela, Angelo, Leuzzi, Giuseppe, Hangai, Sho, Decker, Aubrianna, Gu, Ruoyu, Klickstein, Naomi, Shuai, Yuanlong, Jankovic, Kristina, Parker-Burns, Lucy, Jin, Yinuo, Zhang, Jia Yi, Hong, Justin, Niu, Xiang, Costa, Jonathon A, Pezet, Mikael G, Chou, Jacqueline, Snoeck, Hans-Willem, Landau, Dan A, Azizi, Elham, Chan, Edmond M, Ciccia, Alberto, Gaublomme, Jellert T
Published in Nature biotechnology (07.10.2024)
Published in Nature biotechnology (07.10.2024)
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Journal Article
Promotion of cholangiocarcinoma growth by diverse cancer-associated fibroblast subpopulations
Affo, Silvia, Nair, Ajay, Brundu, Francesco, Ravichandra, Aashreya, Bhattacharjee, Sonakshi, Matsuda, Michitaka, Chin, LiKang, Filliol, Aveline, Wen, Wen, Song, Xinhua, Decker, Aubrianna, Worley, Jeremy, Caviglia, Jorge Matias, Yu, Lexing, Yin, Deqi, Saito, Yoshinobu, Savage, Thomas, Wells, Rebecca G., Mack, Matthias, Zender, Lars, Arpaia, Nicholas, Remotti, Helen E., Rabadan, Raul, Sims, Peter, Leblond, Anne-Laure, Weber, Achim, Riener, Marc-Oliver, Stockwell, Brent R., Gaublomme, Jellert, Llovet, Josep M., Kalluri, Raghu, Michalopoulos, George K., Seki, Ekihiro, Sia, Daniela, Chen, Xin, Califano, Andrea, Schwabe, Robert F.
Published in Cancer cell (14.06.2021)
Published in Cancer cell (14.06.2021)
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Protein C receptor (PROCR) is a negative regulator of Th17 pathogenicity
Kishi, Yasuhiro, Kondo, Takaaki, Xiao, Sheng, Yosef, Nir, Gaublomme, Jellert, Wu, Chuan, Wang, Chao, Chihara, Norio, Regev, Aviv, Joller, Nicole, Kuchroo, Vijay K
Published in The Journal of experimental medicine (17.10.2016)
Published in The Journal of experimental medicine (17.10.2016)
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A Roadmap for the Human Gut Cell Atlas
Zilbauer, Matthias, James, Kylie R., Kaur, Mandeep, Pott, Sebastian, Li, Zhixin, Burger, Albert, Thiagarajah, Jay R., Burclaff, Joseph, Jahnsen, Frode L., Perrone, Francesca, Ross, Alexander D., Matteoli, Gianluca, Stakenborg, Nathalie, Sujino, Tomohisa, Moor, Andreas, Bartolome-Casado, Raquel, Bækkevold, Espen S., Zhou, Ran, Xie, Bingqing, Lau, Ken S., Din, Shahida, Magness, Scott T., Yao, Qiuming, Beyaz, Semir, Arends, Mark, Denadai-Souza, Alexandre, Coburn, Lori A., Gaublomme, Jellert T., Baldock, Richard, Papatheodorou, Irene, Ordovas-Montanes, Jose, Boeckxstaens, Guy, Hupalowska, Anna, Teichmann, Sarah A., Regev, Aviv, Xavier, Ramnik J., Simmons, Alison, Snyder, Michael P., Wilson, Keith T.
Published in Nature reviews. Gastroenterology & hepatology (01.09.2023)
Published in Nature reviews. Gastroenterology & hepatology (01.09.2023)
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Journal Article
Author Correction: Nuclei multiplexing with barcoded antibodies for single-nucleus genomics
Gaublomme, Jellert T., Li, Bo, McCabe, Cristin, Knecht, Abigail, Yang, Yiming, Drokhlyansky, Eugene, Van Wittenberghe, Nicholas, Waldman, Julia, Dionne, Danielle, Nguyen, Lan, De Jager, Philip L., Yeung, Bertrand, Zhao, Xinfang, Habib, Naomi, Rozenblatt-Rosen, Orit, Regev, Aviv
Published in Nature communications (02.11.2020)
Published in Nature communications (02.11.2020)
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Somatic mutation as a mechanism of Wnt/β-catenin pathway activation in CLL
Wang, Lili, Shalek, Alex K., Lawrence, Mike, Ding, Ruihua, Gaublomme, Jellert T., Pochet, Nathalie, Stojanov, Petar, Sougnez, Carrie, Shukla, Sachet A., Stevenson, Kristen E., Zhang, Wandi, Wong, Jessica, Sievers, Quinlan L., MacDonald, Bryan T., Vartanov, Alexander R., Goldstein, Natalie R., Neuberg, Donna, He, Xi, Lander, Eric, Hacohen, Nir, Regev, Aviv, Getz, Gad, Brown, Jennifer R., Park, Hongkun, Wu, Catherine J.
Published in Blood (14.08.2014)
Published in Blood (14.08.2014)
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Identification and characterization of latency-associated peptide-expressing γδ T cells
Rezende, Rafael M., da Cunha, Andre P., Kuhn, Chantal, Rubino, Stephen, M’Hamdi, Hanane, Gabriely, Galina, Vandeventer, Tyler, Liu, Shirong, Cialic, Ron, Pinheiro-Rosa, Natalia, Oliveira, Rafael P., Gaublomme, Jellert T., Obholzer, Nikolaus, Kozubek, James, Pochet, Nathalie, Faria, Ana M. C., Weiner, Howard L.
Published in Nature communications (08.12.2015)
Published in Nature communications (08.12.2015)
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Geometry-dependent functional changes in iPSC-derived cardiomyocytes probed by functional imaging and RNA sequencing
Werley, Christopher A, Chien, Miao-Ping, Gaublomme, Jellert, Shekhar, Karthik, Butty, Vincent, Yi, B Alexander, Kralj, Joel M, Bloxham, Blox, Boyer, Laurie A, Regev, Aviv, Cohen, Adam E
Published in PloS one (23.03.2017)
Published in PloS one (23.03.2017)
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Journal Article
Dynamic regulatory network controlling TH17 cell differentiation
Yosef, Nir, Shalek, Alex K., Gaublomme, Jellert T., Jin, Hulin, Lee, Youjin, Awasthi, Amit, Wu, Chuan, Karwacz, Katarzyna, Xiao, Sheng, Jorgolli, Marsela, Gennert, David, Satija, Rahul, Shakya, Arvind, Lu, Diana Y., Trombetta, John J., Pillai, Meenu R., Ratcliffe, Peter J., Coleman, Mathew L., Bix, Mark, Tantin, Dean, Park, Hongkun, Kuchroo, Vijay K., Regev, Aviv
Published in Nature (London) (25.04.2013)
Published in Nature (London) (25.04.2013)
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Journal Article
CRISPRmap: Sequencing-free optical pooled screens mapping multi-omic phenotypes in cells and tissue
Gu, Jiacheng, Iyer, Abhishek, Wesley, Ben, Taglialatela, Angelo, Leuzzi, Giuseppe, Hangai, Sho, Decker, Aubrianna, Gu, Ruoyu, Klickstein, Naomi, Shuai, Yuanlong, Jankovic, Kristina, Parker-Burns, Lucy, Jin, Yinuo, Zhang, Jia Yi, Hong, Justin, Niu, Steve, Chou, Jacqueline, Landau, Dan A, Azizi, Elham, Chan, Edmond M, Ciccia, Alberto, Gaublomme, Jellert T
Published in bioRxiv (26.12.2023)
Published in bioRxiv (26.12.2023)
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Journal Article
Paper
CD5L/AIM Regulates Lipid Biosynthesis and Restrains Th17 Cell Pathogenicity
Wang, Chao, Yosef, Nir, Gaublomme, Jellert, Wu, Chuan, Lee, Youjin, Clish, Clary B., Kaminski, Jim, Xiao, Sheng, Zu Horste, Gerd Meyer, Pawlak, Mathias, Kishi, Yasuhiro, Joller, Nicole, Karwacz, Katarzyna, Zhu, Chen, Ordovas-Montanes, Maria, Madi, Asaf, Wortman, Ivo, Miyazaki, Toru, Sobel, Raymond A., Park, Hongkun, Regev, Aviv, Kuchroo, Vijay K.
Published in Cell (03.12.2015)
Published in Cell (03.12.2015)
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Most axonal mitochondria in cortical pyramidal neurons lack mitochondrial DNA and consume ATP
Hirabayashi, Yusuke, Lewis, Tommy L, Du, Yudan, Virga, Daniel M, Decker, Aubrianna, Coceano, Giovanna, Alvelid, Jonatan, Maela, Paul, Hamilton, Stevie, Parker Kneis, Takahashi, Yasufumi, Gaublomme, Jellert, Testa, Ilaria, Polleux, Franck
Published in bioRxiv (13.02.2024)
Published in bioRxiv (13.02.2024)
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Paper
CD5L/AIM regulates lipid biosythesis and restrains Th17 cell pathogenicity
Wang, Chao, Yosef, Nir, Gaublomme, Jellert, Wu, Chuan, Lee, Youjin, Clish, Clary B., Kaminski, Jim, Xiao, Sheng, Horste, Gerd Meyer Zu, Pawlak, Mathias, Kishi, Yasuhiro, Joller, Nicole, Karwacz, Katarzyna, Zhu, Chen, Ordovas-Montanes, Maria, Madi, Asaf, Wortman, Ivo, Miyazaki, Toru, Sobel, Raymond A., Park, Hongkun, Regev, Aviv, Kuchroo, Vijay K.
Published in Cell (19.11.2015)
Published in Cell (19.11.2015)
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