Pancreatic islet enhancer clusters enriched in type 2 diabetes risk-associated variants
Pasquali, Lorenzo, Gaulton, Kyle J, Rodríguez-Seguí, Santiago A, Mularoni, Loris, Miguel-Escalada, Irene, Akerman, İldem, Tena, Juan J, Morán, Ignasi, Gómez-Marín, Carlos, van de Bunt, Martijn, Ponsa-Cobas, Joan, Castro, Natalia, Nammo, Takao, Cebola, Inês, García-Hurtado, Javier, Maestro, Miguel Angel, Pattou, François, Piemonti, Lorenzo, Berney, Thierry, Gloyn, Anna L, Ravassard, Philippe, Skarmeta, José Luis Gómez, Müller, Ferenc, McCarthy, Mark I, Ferrer, Jorge
Published in Nature genetics (01.02.2014)
Published in Nature genetics (01.02.2014)
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A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation
Acemel, Rafael D, Tena, Juan J, Irastorza-Azcarate, Ibai, Marlétaz, Ferdinand, Gómez-Marín, Carlos, de la Calle-Mustienes, Elisa, Bertrand, Stéphanie, Diaz, Sergio G, Aldea, Daniel, Aury, Jean-Marc, Mangenot, Sophie, Holland, Peter W H, Devos, Damien P, Maeso, Ignacio, Escrivá, Hector, Gómez-Skarmeta, José Luis
Published in Nature genetics (01.03.2016)
Published in Nature genetics (01.03.2016)
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Journal Article
Hoxd13 Contribution to the Evolution of Vertebrate Appendages
Freitas, Renata, Gómez-Marín, Carlos, Wilson, Jonathan Mark, Casares, Fernando, Gómez-Skarmeta, José Luis
Published in Developmental cell (11.12.2012)
Published in Developmental cell (11.12.2012)
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Genome-wide profiling of p63 DNA-binding sites identifies an element that regulates gene expression during limb development in the 7q21 SHFM1 locus
Kouwenhoven, Evelyn N, van Heeringen, Simon J, Tena, Juan J, Oti, Martin, Dutilh, Bas E, Alonso, M Eva, de la Calle-Mustienes, Elisa, Smeenk, Leonie, Rinne, Tuula, Parsaulian, Lilian, Bolat, Emine, Jurgelenaite, Rasa, Huynen, Martijn A, Hoischen, Alexander, Veltman, Joris A, Brunner, Han G, Roscioli, Tony, Oates, Emily, Wilson, Meredith, Manzanares, Miguel, Gómez-Skarmeta, José Luis, Stunnenberg, Hendrik G, Lohrum, Marion, van Bokhoven, Hans, Zhou, Huiqing
Published in PLoS genetics (01.08.2010)
Published in PLoS genetics (01.08.2010)
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Long-range gene regulation links genomic type 2 diabetes and obesity risk regions to HHEX, SOX4, and IRX3
Ragvin, Anja, Moro, Enrico, Fredman, David, Navratilova, Pavla, Drivenes, Øyvind, Engström, Pär G, Alonso, M. Eva, Mustienes, Elisa de la Calle, Skarmeta, José Luis Gómez, Tavares, Maria J, Casares, Fernando, Manzanares, Miguel, van Heyningen, Veronica, Molven, Anders, Njølstad, Pål R, Argenton, Francesco, Lenhard, Boris, Becker, Thomas S
Published in Proceedings of the National Academy of Sciences - PNAS (12.01.2010)
Published in Proceedings of the National Academy of Sciences - PNAS (12.01.2010)
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Allelic variation at the 8q23.3 colorectal cancer risk locus functions as a cis-acting regulator of EIF3H
Pittman, Alan M, Naranjo, Silvia, Jalava, Sanni E, Twiss, Philip, Ma, Yussanne, Olver, Bianca, Lloyd, Amy, Vijayakrishnan, Jayaram, Qureshi, Mobshra, Broderick, Peter, van Wezel, Tom, Morreau, Hans, Tuupanen, Sari, Aaltonen, Lauri A, Alonso, M Eva, Manzanares, Miguel, Gavilán, Angela, Visakorpi, Tapio, Gómez-Skarmeta, José Luis, Houlston, Richard S
Published in PLoS genetics (01.09.2010)
Published in PLoS genetics (01.09.2010)
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A conserved Shh cis-regulatory module highlights a common developmental origin of unpaired and paired fins
Letelier, Joaquín, de la Calle-Mustienes, Elisa, Pieretti, Joyce, Naranjo, Silvia, Maeso, Ignacio, Nakamura, Tetsuya, Pascual-Anaya, Juan, Shubin, Neil H., Schneider, Igor, Martinez-Morales, Juan Ramón, Gómez-Skarmeta, José Luis
Published in Nature genetics (01.04.2018)
Published in Nature genetics (01.04.2018)
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Journal Article
Half a century of neural prepatterning: the story of a few bristles and many genes
Modolell, Juan, Gómez-Skarmeta, José Luis, Campuzano, Sonsoles
Published in Nature reviews. Neuroscience (01.07.2003)
Published in Nature reviews. Neuroscience (01.07.2003)
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Journal Article
The little skate genome and the evolutionary emergence of wing-like fins
Marlétaz, Ferdinand, de la Calle-Mustienes, Elisa, Acemel, Rafael D., Paliou, Christina, Naranjo, Silvia, Martínez-García, Pedro Manuel, Cases, Ildefonso, Sleight, Victoria A., Hirschberger, Christine, Marcet-Houben, Marina, Navon, Dina, Andrescavage, Ali, Skvortsova, Ksenia, Duckett, Paul Edward, González-Rajal, Álvaro, Bogdanovic, Ozren, Gibcus, Johan H., Yang, Liyan, Gallardo-Fuentes, Lourdes, Sospedra, Ismael, Lopez-Rios, Javier, Darbellay, Fabrice, Visel, Axel, Dekker, Job, Shubin, Neil, Gabaldón, Toni, Nakamura, Tetsuya, Tena, Juan J., Lupiáñez, Darío G., Rokhsar, Daniel S., Gómez-Skarmeta, José Luis
Published in Nature (London) (20.04.2023)
Published in Nature (London) (20.04.2023)
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Journal Article
Deletion 1q43-44 in a patient with clinical diagnosis of Warburg-Micro syndrome
Arroyo-Carrera, Ignacio, de Zaldívar Tristancho, María Solo, Bermejo-Sánchez, Eva, Martínez-Fernández, María Luisa, López-Lafuente, Amparo, MacDonald, Alexandra, Zúñiga, Ángel, Luis Gómez-Skarmeta, José, Luisa Martínez-Frías, María
Published in American journal of medical genetics. Part A (01.06.2015)
Published in American journal of medical genetics. Part A (01.06.2015)
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Journal Article
Epigenomic profiling of primate lymphoblastoid cell lines reveals the evolutionary patterns of epigenetic activities in gene regulatory architectures
García-Pérez, Raquel, Esteller-Cucala, Paula, Mas, Glòria, Lobón, Irene, Di Carlo, Valerio, Riera, Meritxell, Kuhlwilm, Martin, Navarro, Arcadi, Blancher, Antoine, Di Croce, Luciano, Gómez-Skarmeta, José Luis, Juan, David, Marquès-Bonet, Tomàs
Published in Nature communications (25.05.2021)
Published in Nature communications (25.05.2021)
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Characterization of new otic enhancers of the pou3f4 gene reveal distinct signaling pathway regulation and spatio-temporal patterns
Robert-Moreno, Àlex, Naranjo, Silvia, de la Calle-Mustienes, Elisa, Gómez-Skarmeta, José Luis, Alsina, Berta
Published in PloS one (31.12.2010)
Published in PloS one (31.12.2010)
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Gene regulatory network architecture in different developmental contexts influences the genetic basis of morphological evolution
Kittelmann, Sebastian, Buffry, Alexandra D, Franke, Franziska A, Almudi, Isabel, Yoth, Marianne, Sabaris, Gonzalo, Couso, Juan Pablo, Nunes, Maria D S, Frankel, Nicolás, Gómez-Skarmeta, José Luis, Pueyo-Marques, Jose, Arif, Saad, McGregor, Alistair P
Published in PLoS genetics (03.05.2018)
Published in PLoS genetics (03.05.2018)
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An evolutionarily conserved three-dimensional structure in the vertebrate Irx clusters facilitates enhancer sharing and coregulation
Tena, Juan J., Alonso, M. Eva, de la Calle-Mustienes, Elisa, Splinter, Erik, de Laat, Wouter, Manzanares, Miguel, Gómez-Skarmeta, José Luis
Published in Nature communications (10.05.2011)
Published in Nature communications (10.05.2011)
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Journal Article
Evolution of embryonic cis-regulatory landscapes between divergent Phallusia and Ciona ascidians
Madgwick, Alicia, Magri, Marta Silvia, Dantec, Christelle, Gailly, Damien, Fiuza, Ulla-Maj, Guignard, Léo, Hettinger, Sabrina, Gomez-Skarmeta, Jose Luis, Lemaire, Patrick
Published in Developmental biology (15.04.2019)
Published in Developmental biology (15.04.2019)
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Journal Article
The colorectal cancer risk at 18q21 is caused by a novel variant altering SMAD7 expression
Pittman, Alan M, Naranjo, Silvia, Webb, Emily, Broderick, Peter, Lips, Esther H, van Wezel, Tom, Morreau, Hans, Sullivan, Kate, Fielding, Sarah, Twiss, Philip, Vijayakrishnan, Jayaram, Casares, Fernando, Qureshi, Mobshra, Gómez-Skarmeta, José Luis, Houlston, Richard S
Published in Genome Research (01.06.2009)
Published in Genome Research (01.06.2009)
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Journal Article
Assaying Chromatin Accessibility Using ATAC-Seq in Invertebrate Chordate Embryos
Magri, Marta Silvia, Jiménez-Gancedo, Sandra, Bertrand, Stephanie, Madgwick, Alicia, Escrivà, Hector, Lemaire, Patrick, Gómez-Skarmeta, José Luis
Published in Frontiers in cell and developmental biology (24.01.2020)
Published in Frontiers in cell and developmental biology (24.01.2020)
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Journal Article
Identification and analysis of conserved cis-regulatory regions of the MEIS1 gene
Royo, José Luis, Bessa, José, Hidalgo, Carmen, Fernández-Miñán, Ana, Tena, Juan J, Roncero, Yolanda, Gómez-Skarmeta, José Luis, Casares, Fernando
Published in PloS one (20.03.2012)
Published in PloS one (20.03.2012)
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